Wall clock time and date at job start Sun Mar 29 2020 22:02:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46901 * 109.47260 * 2 1 4 4 C 1.46901 * 110.99902 * 60.57711 * 3 2 1 5 5 C 1.52995 * 109.47222 * 66.04614 * 4 3 2 6 6 H 1.08994 * 109.47465 * 304.99879 * 5 4 3 7 7 C 1.47204 * 109.46905 * 65.00024 * 5 4 3 8 8 N 4.43039 * 137.24852 * 51.65257 * 2 1 3 9 9 C 1.53005 * 109.47448 * 184.99924 * 5 4 3 10 10 C 1.50690 * 109.47380 * 175.00143 * 9 5 4 11 11 H 1.08005 * 120.00107 * 0.02562 * 10 9 5 12 12 C 1.37871 * 120.00239 * 180.02562 * 10 9 5 13 13 N 1.31519 * 120.00248 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 120.00344 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47098 * 359.97438 * 14 12 10 16 16 H 1.48501 * 109.47376 * 119.99657 * 14 12 10 17 17 H 1.48505 * 109.47052 * 239.99873 * 14 12 10 18 18 C 1.46904 * 111.00056 * 296.62829 * 3 2 1 19 19 C 1.53004 * 109.46858 * 288.03598 * 18 3 2 20 20 C 1.52997 * 117.49930 * 245.76672 * 19 18 3 21 21 C 1.52995 * 117.49929 * 177.10460 * 19 18 3 22 22 H 1.09004 * 109.46763 * 60.36145 * 1 2 3 23 23 H 1.09003 * 109.46974 * 180.36021 * 1 2 3 24 24 H 1.09002 * 109.47198 * 300.35929 * 1 2 3 25 25 H 1.09002 * 109.47480 * 240.00112 * 2 1 3 26 26 H 1.09004 * 109.47147 * 119.99824 * 2 1 3 27 27 H 1.09003 * 109.47418 * 306.04975 * 4 3 2 28 28 H 1.09004 * 109.47331 * 186.05043 * 4 3 2 29 29 H 1.08997 * 109.46651 * 55.00153 * 9 5 4 30 30 H 1.09005 * 109.47108 * 295.00481 * 9 5 4 31 31 H 0.96993 * 120.00364 * 180.02562 * 13 12 10 32 32 H 1.09001 * 109.47133 * 48.02946 * 18 3 2 33 33 H 1.08997 * 109.47257 * 168.03820 * 18 3 2 34 34 H 1.08999 * 115.54622 * 31.43006 * 19 18 3 35 35 H 1.09005 * 117.49593 * 359.97438 * 20 19 18 36 36 H 1.08998 * 117.50397 * 145.01419 * 20 19 18 37 37 H 1.09003 * 117.49412 * 214.97982 * 21 19 18 38 38 H 1.08998 * 117.50068 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5600 2.1059 1.1946 5 6 2.2035 1.4923 2.4396 6 1 1.9918 0.4235 2.4688 7 6 3.6596 1.7031 2.3939 8 7 4.7833 1.8659 2.3586 9 6 1.6306 2.1600 3.6915 10 6 2.1715 1.4736 4.9191 11 1 2.8559 0.6443 4.8168 12 6 1.7929 1.9041 6.1729 13 7 0.9599 2.9142 6.2977 14 14 2.4640 1.0537 7.6948 15 1 3.3758 -0.0449 7.2863 16 1 3.2105 2.0355 8.5218 17 1 1.3387 0.4941 8.4859 18 6 1.6157 2.0863 -1.2260 19 6 2.4248 1.5517 -2.4094 20 6 3.3992 2.5143 -3.0914 21 6 2.1016 2.1110 -3.7964 22 1 -0.3633 0.5082 -0.8933 23 1 -0.3633 -1.0277 0.0065 24 1 -0.3634 0.5194 0.8868 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 0.4754 2.0287 1.2707 28 1 1.8450 3.1552 1.1178 29 1 0.5436 2.0808 3.6802 30 1 1.9182 3.2113 3.7065 31 1 0.6938 3.2174 7.1798 32 1 0.5538 1.9193 -1.4069 33 1 1.8014 3.1542 -1.1117 34 1 2.7157 0.5032 -2.3447 35 1 3.4634 3.5285 -2.6971 36 1 4.3308 2.0991 -3.4757 37 1 2.1802 1.4304 -4.6442 38 1 1.3123 2.8594 -3.8658 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000112560590.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:50 Heat of formation + Delta-G solvation = 24.811030 kcal Electronic energy + Delta-G solvation = -16634.694045 eV Core-core repulsion = 14091.004725 eV Total energy + Delta-G solvation = -2543.689320 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.04393 -38.12373 -36.85542 -35.45190 -33.51181 -31.02972 -29.09073 -26.67677 -25.36101 -23.70262 -23.16500 -22.12413 -20.48800 -18.49450 -18.28447 -17.18308 -16.53529 -16.40701 -16.02868 -15.22728 -15.02559 -14.69386 -14.44774 -14.05120 -13.76099 -13.68784 -13.21846 -13.11484 -13.01372 -12.80298 -12.61673 -12.45898 -12.33748 -12.29967 -12.07371 -11.88756 -11.54368 -11.37607 -11.21616 -10.99572 -10.71672 -10.55151 -9.08667 -8.19260 -6.27405 1.39166 1.42373 1.52817 2.07422 2.15236 2.41765 2.81131 3.15396 3.17380 3.36543 3.87029 4.05387 4.12942 4.22005 4.29285 4.31638 4.47668 4.55078 4.61260 4.70571 4.76687 4.82121 4.83816 4.86667 4.96600 5.08725 5.17090 5.23410 5.30618 5.39498 5.46055 5.51683 5.62156 5.79610 6.12731 6.24726 6.27588 6.83622 6.94267 7.41308 8.91934 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.038094 B = 0.005195 C = 0.004962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.848149 B = 5388.194958 C = 5641.796719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.043 3.957 3 N -0.550 5.550 4 C 0.069 3.931 5 C 0.022 3.978 6 H 0.115 0.885 7 C 0.267 3.733 8 N -0.515 5.515 9 C 0.038 3.962 10 C -0.538 4.538 11 H 0.053 0.947 12 C 0.013 3.987 13 N -0.923 5.923 14 Si 0.948 3.052 15 H -0.270 1.270 16 H -0.285 1.285 17 H -0.272 1.272 18 C 0.083 3.917 19 C -0.150 4.150 20 C -0.189 4.189 21 C -0.166 4.166 22 H 0.064 0.936 23 H 0.071 0.929 24 H 0.055 0.945 25 H 0.084 0.916 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.035 0.965 30 H 0.000 1.000 31 H 0.264 0.736 32 H 0.058 0.942 33 H 0.066 0.934 34 H 0.102 0.898 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.104 0.896 38 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.975 -4.140 -17.515 18.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.084 4.084 3 N -0.273 5.273 4 C -0.060 4.060 5 C 0.000 4.000 6 H 0.133 0.867 7 C -0.050 4.050 8 N -0.192 5.192 9 C 0.000 4.000 10 C -0.576 4.576 11 H 0.071 0.929 12 C -0.186 4.186 13 N -0.563 5.563 14 Si 0.774 3.226 15 H -0.194 1.194 16 H -0.211 1.211 17 H -0.197 1.197 18 C -0.044 4.044 19 C -0.168 4.168 20 C -0.226 4.226 21 C -0.203 4.203 22 H 0.083 0.917 23 H 0.090 0.910 24 H 0.074 0.926 25 H 0.102 0.898 26 H 0.088 0.912 27 H 0.091 0.909 28 H 0.090 0.910 29 H 0.053 0.947 30 H 0.019 0.981 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.120 0.880 35 H 0.105 0.895 36 H 0.109 0.891 37 H 0.122 0.878 38 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -1.846 -3.808 -17.436 17.942 hybrid contribution -0.760 -0.152 1.233 1.457 sum -2.606 -3.960 -16.203 16.882 Atomic orbital electron populations 1.22367 0.97098 1.03128 1.02137 1.22263 0.93899 0.89408 1.02881 1.62140 1.60414 1.03086 1.01688 1.22097 0.98759 0.97644 0.87530 1.19185 0.80558 1.03328 0.96907 0.86732 1.29349 0.95249 0.91015 0.89339 1.80963 1.14471 1.11251 1.12545 1.18991 0.96603 0.94787 0.89664 1.21565 1.27305 1.16528 0.92176 0.92894 1.25694 0.95315 0.95632 1.01985 1.70035 1.34749 1.27273 1.24290 0.85652 0.78505 0.78636 0.79834 1.19406 1.21122 1.19725 1.21712 0.97528 0.97392 0.87758 1.22216 1.02847 0.98969 0.92782 1.23029 0.94609 0.99960 1.05004 1.23031 0.98758 1.03655 0.94847 0.91746 0.91041 0.92647 0.89812 0.91206 0.90891 0.90991 0.94662 0.98123 0.92707 0.92397 0.91513 0.87951 0.89458 0.89056 0.87770 0.88133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.60 9.28 71.98 0.67 -2.93 16 2 C 0.04 0.95 5.70 86.30 0.49 1.44 16 3 N -0.55 -14.10 4.37 -896.20 -3.91 -18.02 16 4 C 0.07 2.00 4.08 86.30 0.35 2.35 16 5 C 0.02 0.81 2.13 -12.60 -0.03 0.78 16 6 H 0.12 3.91 6.32 -2.39 -0.02 3.90 16 7 C 0.27 11.33 13.67 89.44 1.22 12.55 16 8 N -0.51 -23.87 18.54 20.01 0.37 -23.50 16 9 C 0.04 1.79 4.42 29.85 0.13 1.92 16 10 C -0.54 -28.71 8.60 25.60 0.22 -28.49 16 11 H 0.05 2.82 7.59 -2.91 -0.02 2.79 16 12 C 0.01 0.69 5.46 84.65 0.46 1.16 16 13 N -0.92 -53.13 13.29 21.45 0.28 -52.84 16 14 Si 0.95 43.61 29.54 68.60 2.03 45.63 16 15 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 16 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 17 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 18 C 0.08 1.78 5.12 86.30 0.44 2.22 16 19 C -0.15 -2.94 5.71 -10.79 -0.06 -3.00 16 20 C -0.19 -3.67 10.18 30.62 0.31 -3.35 16 21 C -0.17 -2.59 10.25 30.62 0.31 -2.27 16 22 H 0.06 1.11 6.27 -2.38 -0.01 1.09 16 23 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 24 H 0.05 1.19 6.27 -2.39 -0.01 1.17 16 25 H 0.08 1.65 6.61 -2.39 -0.02 1.63 16 26 H 0.07 1.69 6.35 -2.39 -0.02 1.68 16 27 H 0.07 1.92 6.01 -2.39 -0.01 1.91 16 28 H 0.07 2.18 7.86 -2.38 -0.02 2.16 16 29 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.00 0.02 8.14 -2.38 -0.02 0.00 16 31 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 32 H 0.06 1.09 5.90 -2.39 -0.01 1.07 16 33 H 0.07 1.49 7.55 -2.39 -0.02 1.47 16 34 H 0.10 2.08 6.75 -2.39 -0.02 2.06 16 35 H 0.09 1.77 8.04 -2.38 -0.02 1.75 16 36 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -62.27 310.33 4.33 -57.94 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: 1.04 Total: 8.41 kcal Atomic # 6 Polarization: -22.15 SS G_CDS: 4.53 Total: -17.63 kcal Atomic # 7 Polarization: -91.10 SS G_CDS: -3.26 Total: -94.36 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.63 kcal Total: -62.27 4.33 -57.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112560590.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.754 kcal (2) G-P(sol) polarization free energy of solvation -62.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds