Wall clock time and date at job start Sun Mar 29 2020 21:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47168 * 10.26207 * 3 2 1 5 5 N 1.46896 * 109.47114 * 179.97438 * 4 3 2 6 6 C 1.46956 * 111.00264 * 293.80085 * 5 4 3 7 7 C 1.53048 * 109.36563 * 176.81245 * 6 5 4 8 8 N 1.46963 * 109.36781 * 58.39854 * 7 6 5 9 9 C 1.46896 * 110.99868 * 176.81328 * 8 7 6 10 10 C 1.53005 * 109.46888 * 293.79536 * 9 8 7 11 11 C 1.50706 * 109.46574 * 180.02562 * 10 9 8 12 12 H 1.07993 * 120.00428 * 0.02562 * 11 10 9 13 13 C 1.37876 * 119.99561 * 179.97438 * 11 10 9 14 14 N 1.31521 * 120.00370 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99998 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47176 * 90.00327 * 15 13 11 17 17 H 1.48504 * 109.47342 * 210.00271 * 15 13 11 18 18 H 1.48505 * 109.46995 * 330.00209 * 15 13 11 19 19 C 1.46957 * 110.87713 * 300.68055 * 8 7 6 20 20 C 1.46963 * 111.00169 * 169.99835 * 5 4 3 21 21 H 4.44645 * 5.63342 * 179.97438 * 4 1 2 22 22 H 1.09001 * 109.47046 * 130.25833 * 3 2 1 23 23 H 1.08996 * 109.47366 * 250.26237 * 3 2 1 24 24 H 1.09001 * 109.47289 * 300.00032 * 4 3 2 25 25 H 1.09004 * 109.47261 * 59.99776 * 4 3 2 26 26 H 1.09006 * 109.48298 * 296.77713 * 6 5 4 27 27 H 1.09000 * 109.49028 * 56.84339 * 6 5 4 28 28 H 1.08998 * 109.49036 * 298.43023 * 7 6 5 29 29 H 1.09001 * 109.49100 * 178.36836 * 7 6 5 30 30 H 1.08997 * 109.47364 * 53.79771 * 9 8 7 31 31 H 1.09005 * 109.46879 * 173.79995 * 9 8 7 32 32 H 1.08997 * 109.47309 * 300.00268 * 10 9 8 33 33 H 1.08995 * 109.46860 * 60.01065 * 10 9 8 34 34 H 0.96996 * 119.99930 * 179.97438 * 14 13 11 35 35 H 1.08997 * 109.48761 * 299.34899 * 19 8 7 36 36 H 1.09000 * 109.48710 * 179.28489 * 19 8 7 37 37 H 1.09002 * 109.48412 * 303.15760 * 20 5 4 38 38 H 1.08998 * 109.48746 * 63.21928 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1566 -1.4185 -0.2570 5 7 4.6256 -1.4177 -0.2576 6 6 5.1514 -0.6492 -1.3945 7 6 6.6792 -0.6059 -1.3146 8 7 7.2066 -1.9776 -1.3208 9 6 8.6756 -1.9768 -1.3214 10 6 9.1847 -1.3886 -2.6389 11 6 10.6918 -1.3883 -2.6396 12 1 11.2323 -1.7699 -1.7861 13 6 11.3804 -0.9019 -3.7306 14 7 10.7222 -0.4378 -4.7703 15 14 13.2484 -0.9022 -3.7319 16 1 13.7428 -2.1808 -4.3028 17 1 13.7431 0.2311 -4.5543 18 1 13.7444 -0.7571 -2.3397 19 6 6.6808 -2.7461 -0.1839 20 6 5.1530 -2.7894 -0.2638 21 1 -1.0498 -0.0004 0.0001 22 1 3.0090 0.6649 -0.7843 23 1 3.0092 0.3479 0.9672 24 1 2.7936 -2.0829 0.5272 25 1 2.7934 -1.7658 -1.2243 26 1 4.8494 -1.1265 -2.3268 27 1 4.7566 0.3662 -1.3607 28 1 6.9812 -0.1044 -0.3952 29 1 7.0729 -0.0610 -2.1726 30 1 9.0389 -1.3733 -0.4896 31 1 9.0395 -2.9987 -1.2150 32 1 8.8214 -1.9921 -3.4707 33 1 8.8209 -0.3667 -2.7452 34 1 11.2068 -0.0952 -5.5376 35 1 6.9828 -2.2689 0.7484 36 1 7.0756 -3.7615 -0.2176 37 1 4.7593 -3.3343 0.5942 38 1 4.8510 -3.2910 -1.1832 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000119804619.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:25 Heat of formation + Delta-G solvation = 34.063438 kcal Electronic energy + Delta-G solvation = -16388.384494 eV Core-core repulsion = 13845.096389 eV Total energy + Delta-G solvation = -2543.288105 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.37318 -37.50897 -35.43695 -34.57520 -32.25953 -31.75249 -30.39949 -27.60283 -25.51754 -24.77150 -23.14200 -22.05184 -20.70755 -18.98397 -18.58174 -17.13306 -16.58686 -16.44468 -15.99241 -15.69771 -15.49130 -15.39786 -14.96928 -14.28561 -14.19851 -13.99536 -13.47488 -13.18102 -13.00024 -12.83581 -12.60244 -12.43312 -12.22387 -12.03686 -11.89900 -11.74492 -11.26413 -11.20306 -11.06074 -10.91790 -10.53309 -9.41121 -9.16445 -8.19636 -6.30950 1.40603 1.42215 1.53193 1.86049 1.93883 2.40668 2.84845 3.07784 3.13705 3.63946 3.93453 3.98239 4.11850 4.21493 4.28615 4.42216 4.46978 4.51341 4.58956 4.61794 4.73535 4.82488 4.94964 4.97396 4.98958 5.02995 5.07818 5.13826 5.21635 5.45658 5.66201 5.77541 5.97281 6.00380 6.14602 6.31895 6.34237 6.72387 6.86113 7.38081 8.92492 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.053862 B = 0.004015 C = 0.003823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.719487 B = 6972.412946 C = 7322.310330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.217 4.217 3 C -0.009 4.009 4 C 0.068 3.932 5 N -0.544 5.544 6 C 0.064 3.936 7 C 0.059 3.941 8 N -0.554 5.554 9 C 0.080 3.920 10 C 0.038 3.962 11 C -0.545 4.545 12 H 0.060 0.940 13 C 0.001 3.999 14 N -0.932 5.932 15 Si 0.967 3.033 16 H -0.272 1.272 17 H -0.282 1.282 18 H -0.263 1.263 19 C 0.055 3.945 20 C 0.065 3.935 21 H 0.245 0.755 22 H 0.087 0.913 23 H 0.098 0.902 24 H 0.088 0.912 25 H 0.033 0.967 26 H 0.032 0.968 27 H 0.096 0.904 28 H 0.034 0.966 29 H 0.062 0.938 30 H 0.019 0.981 31 H 0.064 0.936 32 H -0.010 1.010 33 H -0.005 1.005 34 H 0.264 0.736 35 H 0.037 0.963 36 H 0.084 0.916 37 H 0.102 0.898 38 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.683 -1.594 10.739 19.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.218 4.218 3 C -0.045 4.045 4 C -0.060 4.060 5 N -0.269 5.269 6 C -0.064 4.064 7 C -0.069 4.069 8 N -0.279 5.279 9 C -0.047 4.047 10 C 0.000 4.000 11 C -0.583 4.583 12 H 0.078 0.922 13 C -0.197 4.197 14 N -0.572 5.572 15 Si 0.791 3.209 16 H -0.197 1.197 17 H -0.207 1.207 18 H -0.187 1.187 19 C -0.073 4.073 20 C -0.063 4.063 21 H 0.261 0.739 22 H 0.105 0.895 23 H 0.116 0.884 24 H 0.106 0.894 25 H 0.051 0.949 26 H 0.050 0.950 27 H 0.114 0.886 28 H 0.052 0.948 29 H 0.080 0.920 30 H 0.037 0.963 31 H 0.083 0.917 32 H 0.009 0.991 33 H 0.013 0.987 34 H 0.072 0.928 35 H 0.055 0.945 36 H 0.103 0.897 37 H 0.120 0.880 38 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -16.650 -1.535 10.584 19.789 hybrid contribution 0.922 0.177 -0.520 1.073 sum -15.728 -1.358 10.065 18.722 Atomic orbital electron populations 1.25691 0.96844 0.99268 1.00330 1.23450 0.95176 1.01847 1.01333 1.18663 0.84210 0.97485 1.04172 1.21965 0.86177 0.96859 1.00974 1.62160 1.07719 1.14144 1.42827 1.22155 0.93290 0.99325 0.91659 1.22101 0.94969 0.89690 1.00174 1.62188 1.08210 1.14149 1.43373 1.21951 0.85567 0.99790 0.97383 1.18908 0.94282 0.94373 0.92427 1.21630 0.93044 1.41211 1.02429 0.92198 1.25970 1.03969 0.94729 0.95043 1.70111 1.37609 1.42587 1.06848 0.85425 0.79069 0.77899 0.78502 1.19732 1.20702 1.18738 1.22216 0.95029 0.98581 0.91425 1.22149 0.93637 0.88995 1.01543 0.73865 0.89457 0.88372 0.89390 0.94894 0.94964 0.88556 0.94779 0.91996 0.96281 0.91723 0.99121 0.98700 0.92760 0.94511 0.89745 0.87957 0.94652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.32 19.25 74.32 1.43 -1.89 16 2 C -0.22 -4.23 13.34 31.13 0.42 -3.81 16 3 C -0.01 -0.16 5.64 28.79 0.16 0.00 16 4 C 0.07 1.34 4.91 86.30 0.42 1.76 16 5 N -0.54 -13.11 4.71 -895.71 -4.22 -17.33 16 6 C 0.06 1.77 5.41 86.31 0.47 2.23 16 7 C 0.06 2.06 5.41 86.31 0.47 2.53 16 8 N -0.55 -20.65 4.71 -895.71 -4.22 -24.87 16 9 C 0.08 3.50 4.90 86.31 0.42 3.93 16 10 C 0.04 2.04 4.91 29.85 0.15 2.19 16 11 C -0.54 -31.54 9.11 25.60 0.23 -31.30 16 12 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 13 C 0.00 0.05 5.46 84.65 0.46 0.51 16 14 N -0.93 -57.44 13.29 21.45 0.28 -57.15 16 15 Si 0.97 44.64 29.54 68.60 2.03 46.67 16 16 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 17 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 18 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 19 C 0.06 1.61 5.61 86.31 0.48 2.10 16 20 C 0.06 1.55 5.61 86.31 0.48 2.04 16 21 H 0.24 2.03 7.80 -4.43 -0.03 2.00 16 22 H 0.09 1.60 6.49 -2.39 -0.02 1.59 16 23 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 24 H 0.09 1.54 8.03 -2.39 -0.02 1.52 16 25 H 0.03 0.69 8.12 -2.38 -0.02 0.67 16 26 H 0.03 0.96 8.14 -2.38 -0.02 0.94 16 27 H 0.10 2.28 6.34 -2.39 -0.02 2.26 16 28 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.06 2.49 6.34 -2.39 -0.02 2.47 16 30 H 0.02 0.83 8.12 -2.39 -0.02 0.81 16 31 H 0.06 2.73 8.03 -2.38 -0.02 2.71 16 32 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 33 H -0.01 -0.31 6.49 -2.39 -0.02 -0.32 16 34 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 35 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.08 2.29 8.07 -2.39 -0.02 2.27 16 37 H 0.10 1.91 8.07 -2.39 -0.02 1.89 16 38 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -66.39 309.92 0.47 -65.92 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: 1.00 Total: 6.49 kcal Atomic # 6 Polarization: -25.32 SS G_CDS: 5.60 Total: -19.72 kcal Atomic # 7 Polarization: -91.20 SS G_CDS: -8.15 Total: -99.35 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -66.39 0.47 -65.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119804619.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.982 kcal (2) G-P(sol) polarization free energy of solvation -66.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds