Wall clock time and date at job start Sun Mar 29 2020 21:54:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46864 * 2 1 4 4 H 1.08991 * 110.28879 * 55.67058 * 3 2 1 5 5 C 1.54259 * 110.32081 * 293.54166 * 3 2 1 6 6 C 1.54387 * 105.06271 * 241.10780 * 5 3 2 7 7 N 1.48559 * 104.58955 * 336.15098 * 6 5 3 8 8 C 1.46904 * 111.00066 * 159.04379 * 7 6 5 9 9 C 1.53003 * 109.47369 * 69.86594 * 8 7 6 10 10 H 1.09007 * 109.46348 * 55.00550 * 9 8 7 11 11 C 1.47192 * 109.47141 * 295.00576 * 9 8 7 12 12 N 6.39415 * 116.05541 * 312.51727 * 2 1 3 13 13 C 1.52997 * 109.46882 * 175.00185 * 9 8 7 14 14 C 1.50700 * 109.46939 * 185.00006 * 13 9 8 15 15 H 1.08001 * 119.99908 * 0.02562 * 14 13 9 16 16 C 1.37872 * 120.00147 * 179.97438 * 14 13 9 17 17 N 1.31514 * 119.99878 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00126 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47145 * 60.00469 * 18 16 14 20 20 H 1.48506 * 109.47388 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.47393 * 300.00142 * 18 16 14 22 22 C 1.48560 * 104.22567 * 39.48140 * 7 6 5 23 23 H 1.08998 * 109.47157 * 60.00347 * 1 2 3 24 24 H 1.08997 * 109.47050 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47404 * 300.00475 * 1 2 3 26 26 H 1.09002 * 109.47061 * 239.99781 * 2 1 3 27 27 H 1.09000 * 109.46637 * 119.99660 * 2 1 3 28 28 H 1.09000 * 110.32330 * 122.21366 * 5 3 2 29 29 H 1.08999 * 110.32830 * 0.02562 * 5 3 2 30 30 H 1.08999 * 110.41133 * 94.92454 * 6 5 3 31 31 H 1.08999 * 110.41276 * 217.37423 * 6 5 3 32 32 H 1.08996 * 109.47493 * 189.87547 * 8 7 6 33 33 H 1.09004 * 109.46624 * 309.87385 * 8 7 6 34 34 H 1.08995 * 109.47364 * 305.00428 * 13 9 8 35 35 H 1.09003 * 109.46923 * 65.00262 * 13 9 8 36 36 H 0.97001 * 120.00128 * 179.97438 * 17 16 14 37 37 H 1.09004 * 110.40940 * 201.73469 * 22 7 6 38 38 H 1.08996 * 110.50752 * 79.34858 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6224 1.9910 0.8442 5 6 1.6738 2.1402 -1.3262 6 6 3.0261 2.5264 -1.9631 7 7 3.9699 2.6049 -0.8186 8 6 5.3605 2.4713 -1.2729 9 6 5.7639 3.7225 -2.0558 10 1 5.5901 4.6066 -1.4423 11 6 4.9594 3.8125 -3.2852 12 7 4.3386 3.8821 -4.2340 13 6 7.2471 3.6390 -2.4217 14 6 7.6740 4.9234 -3.0843 15 1 6.9590 5.7197 -3.2295 16 6 8.9776 5.0823 -3.5042 17 7 9.8483 4.1128 -3.3270 18 14 9.5070 6.6747 -4.3249 19 1 9.2902 7.8087 -3.3911 20 1 10.9466 6.5937 -4.6802 21 1 8.7049 6.8873 -5.5565 22 6 3.5827 1.4658 0.0528 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.0780 3.0322 -1.1328 29 1 1.1304 1.4552 -1.9770 30 1 3.3468 1.7597 -2.6684 31 1 2.9498 3.4935 -2.4601 32 1 6.0155 2.3562 -0.4093 33 1 5.4500 1.5958 -1.9161 34 1 7.8361 3.4831 -1.5179 35 1 7.4059 2.8063 -3.1070 36 1 10.7654 4.2244 -3.6227 37 1 3.9256 1.6344 1.0737 38 1 3.9905 0.5324 -0.3351 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131486625.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:57 Heat of formation + Delta-G solvation = 8.328966 kcal Electronic energy + Delta-G solvation = -16622.881718 eV Core-core repulsion = 14078.477683 eV Total energy + Delta-G solvation = -2544.404035 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.40023 -36.65608 -34.48734 -33.56114 -31.88846 -29.71953 -28.57445 -26.30123 -23.46371 -23.07562 -21.73984 -20.89331 -19.65660 -16.88318 -16.49888 -16.04945 -15.42241 -14.63336 -14.33141 -14.13328 -13.62436 -13.37460 -13.22183 -12.83943 -12.39115 -12.28011 -12.23697 -12.00796 -11.63344 -11.51557 -11.23515 -11.07114 -10.92112 -10.75261 -10.65353 -10.55430 -10.47180 -10.36120 -10.21731 -9.50728 -9.22422 -8.44204 -8.34034 -6.08439 -4.11588 3.32225 3.36189 3.39967 3.60331 3.66588 4.11449 4.42351 4.55382 4.66810 4.80582 4.83957 5.08145 5.19454 5.26560 5.29517 5.40490 5.46804 5.59800 5.68809 5.72553 5.76144 5.80607 5.83220 5.89503 6.01614 6.10265 6.17658 6.20147 6.29877 6.38233 6.56486 6.96363 7.18468 7.44509 7.54261 7.86543 8.24458 8.43519 8.92714 9.53744 11.02481 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.055648 B = 0.004715 C = 0.004493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.042744 B = 5936.986406 C = 6230.618333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C -0.092 4.092 4 H 0.078 0.922 5 C -0.119 4.119 6 C 0.024 3.976 7 N -0.511 5.511 8 C 0.052 3.948 9 C 0.008 3.992 10 H 0.110 0.890 11 C 0.249 3.751 12 N -0.481 5.481 13 C 0.033 3.967 14 C -0.526 4.526 15 H 0.056 0.944 16 C 0.063 3.937 17 N -0.892 5.892 18 Si 0.892 3.108 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.277 1.277 22 C 0.035 3.965 23 H 0.055 0.945 24 H 0.051 0.949 25 H 0.053 0.947 26 H 0.060 0.940 27 H 0.062 0.938 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.041 0.959 31 H 0.085 0.915 32 H 0.094 0.906 33 H 0.040 0.960 34 H 0.040 0.960 35 H 0.024 0.976 36 H 0.263 0.737 37 H 0.081 0.919 38 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.776 -7.517 8.946 18.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.111 4.111 4 H 0.097 0.903 5 C -0.157 4.157 6 C -0.104 4.104 7 N -0.235 5.235 8 C -0.077 4.077 9 C -0.014 4.014 10 H 0.128 0.872 11 C -0.067 4.067 12 N -0.159 5.159 13 C -0.006 4.006 14 C -0.565 4.565 15 H 0.074 0.926 16 C -0.139 4.139 17 N -0.531 5.531 18 Si 0.719 3.281 19 H -0.200 1.200 20 H -0.212 1.212 21 H -0.203 1.203 22 C -0.093 4.093 23 H 0.074 0.926 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.060 0.940 31 H 0.103 0.897 32 H 0.112 0.888 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.042 0.958 36 H 0.073 0.927 37 H 0.099 0.901 38 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -14.538 -6.941 7.760 17.882 hybrid contribution 0.838 0.090 -0.653 1.066 sum -13.701 -6.852 7.107 16.887 Atomic orbital electron populations 1.21793 0.95856 1.01351 1.01959 1.21604 0.95904 0.96075 1.01914 1.21935 0.95040 0.95731 0.98388 0.90325 1.22405 0.97044 1.00201 0.96067 1.23382 0.92218 1.01582 0.93198 1.65468 1.02816 1.40555 1.14617 1.22410 0.89228 0.96723 0.99315 1.19297 0.96378 0.98992 0.86688 0.87218 1.29170 0.91252 0.91971 0.94286 1.81030 1.13022 1.09861 1.11942 1.19160 0.85281 0.98170 0.97995 1.21110 0.95336 1.00658 1.39358 0.92553 1.24949 0.96657 0.96624 0.95713 1.69929 1.04055 1.32173 1.46939 0.86650 0.77487 0.83841 0.80077 1.19993 1.21191 1.20268 1.23168 0.94695 0.92835 0.98596 0.92560 0.92985 0.92755 0.92090 0.91906 0.91302 0.91469 0.94030 0.89677 0.88804 0.94145 0.94229 0.95810 0.92749 0.90059 0.93760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.74 37.16 0.36 -0.83 16 2 C -0.12 -1.03 5.13 -26.73 -0.14 -1.16 16 3 C -0.09 -0.95 3.09 -89.24 -0.28 -1.22 16 4 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 5 C -0.12 -1.39 6.14 -25.35 -0.16 -1.55 16 6 C 0.02 0.36 4.72 -2.18 -0.01 0.35 16 7 N -0.51 -7.34 5.37 -229.96 -1.24 -8.57 16 8 C 0.05 0.82 4.49 -3.82 -0.02 0.80 16 9 C 0.01 0.16 2.42 -93.41 -0.23 -0.07 16 10 H 0.11 2.03 8.14 -51.93 -0.42 1.61 16 11 C 0.25 5.18 10.65 -20.76 -0.22 4.96 16 12 N -0.48 -10.62 17.69 42.15 0.75 -9.87 16 13 C 0.03 0.77 4.42 -27.88 -0.12 0.64 16 14 C -0.53 -14.19 8.60 -34.44 -0.30 -14.49 16 15 H 0.06 1.51 7.59 -52.49 -0.40 1.11 16 16 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 17 N -0.89 -25.73 13.29 55.43 0.74 -24.99 16 18 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 19 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 22 C 0.04 0.41 6.03 -2.18 -0.01 0.39 16 23 H 0.06 0.45 6.93 -51.93 -0.36 0.09 16 24 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.07 0.73 6.84 -51.93 -0.36 0.38 16 30 H 0.04 0.66 7.72 -51.93 -0.40 0.26 16 31 H 0.08 1.43 5.80 -51.93 -0.30 1.13 16 32 H 0.09 1.34 8.13 -51.93 -0.42 0.91 16 33 H 0.04 0.64 7.88 -51.93 -0.41 0.23 16 34 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.26 7.21 8.31 -40.82 -0.34 6.88 16 37 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.04 0.51 7.72 -51.93 -0.40 0.11 16 LS Contribution 306.42 15.07 4.62 4.62 Total: -1.00 -29.19 306.42 -7.78 -36.96 By element: Atomic # 1 Polarization: 2.33 SS G_CDS: -6.41 Total: -4.08 kcal Atomic # 6 Polarization: -9.31 SS G_CDS: -1.21 Total: -10.52 kcal Atomic # 7 Polarization: -43.68 SS G_CDS: 0.25 Total: -43.43 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.19 -7.78 -36.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131486625.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.292 kcal (2) G-P(sol) polarization free energy of solvation -29.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds