Wall clock time and date at job start Sun Mar 29 2020 21:54:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46864 * 2 1 4 4 H 1.08991 * 110.28879 * 55.67058 * 3 2 1 5 5 C 1.54259 * 110.32081 * 293.54166 * 3 2 1 6 6 C 1.54387 * 105.06271 * 241.10780 * 5 3 2 7 7 N 1.48559 * 104.58955 * 336.15098 * 6 5 3 8 8 C 1.46904 * 111.00066 * 159.04379 * 7 6 5 9 9 C 1.53003 * 109.47369 * 69.86594 * 8 7 6 10 10 H 1.09007 * 109.46348 * 55.00550 * 9 8 7 11 11 C 1.47192 * 109.47141 * 295.00576 * 9 8 7 12 12 N 6.39415 * 116.05541 * 312.51727 * 2 1 3 13 13 C 1.52997 * 109.46882 * 175.00185 * 9 8 7 14 14 C 1.50700 * 109.46939 * 185.00006 * 13 9 8 15 15 H 1.08001 * 119.99908 * 0.02562 * 14 13 9 16 16 C 1.37872 * 120.00147 * 179.97438 * 14 13 9 17 17 N 1.31514 * 119.99878 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00126 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47145 * 60.00469 * 18 16 14 20 20 H 1.48506 * 109.47388 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.47393 * 300.00142 * 18 16 14 22 22 C 1.48560 * 104.22567 * 39.48140 * 7 6 5 23 23 H 1.08998 * 109.47157 * 60.00347 * 1 2 3 24 24 H 1.08997 * 109.47050 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47404 * 300.00475 * 1 2 3 26 26 H 1.09002 * 109.47061 * 239.99781 * 2 1 3 27 27 H 1.09000 * 109.46637 * 119.99660 * 2 1 3 28 28 H 1.09000 * 110.32330 * 122.21366 * 5 3 2 29 29 H 1.08999 * 110.32830 * 0.02562 * 5 3 2 30 30 H 1.08999 * 110.41133 * 94.92454 * 6 5 3 31 31 H 1.08999 * 110.41276 * 217.37423 * 6 5 3 32 32 H 1.08996 * 109.47493 * 189.87547 * 8 7 6 33 33 H 1.09004 * 109.46624 * 309.87385 * 8 7 6 34 34 H 1.08995 * 109.47364 * 305.00428 * 13 9 8 35 35 H 1.09003 * 109.46923 * 65.00262 * 13 9 8 36 36 H 0.97001 * 120.00128 * 179.97438 * 17 16 14 37 37 H 1.09004 * 110.40940 * 201.73469 * 22 7 6 38 38 H 1.08996 * 110.50752 * 79.34858 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6224 1.9910 0.8442 5 6 1.6738 2.1402 -1.3262 6 6 3.0261 2.5264 -1.9631 7 7 3.9699 2.6049 -0.8186 8 6 5.3605 2.4713 -1.2729 9 6 5.7639 3.7225 -2.0558 10 1 5.5901 4.6066 -1.4423 11 6 4.9594 3.8125 -3.2852 12 7 4.3386 3.8821 -4.2340 13 6 7.2471 3.6390 -2.4217 14 6 7.6740 4.9234 -3.0843 15 1 6.9590 5.7197 -3.2295 16 6 8.9776 5.0823 -3.5042 17 7 9.8483 4.1128 -3.3270 18 14 9.5070 6.6747 -4.3249 19 1 9.2902 7.8087 -3.3911 20 1 10.9466 6.5937 -4.6802 21 1 8.7049 6.8873 -5.5565 22 6 3.5827 1.4658 0.0528 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.0780 3.0322 -1.1328 29 1 1.1304 1.4552 -1.9770 30 1 3.3468 1.7597 -2.6684 31 1 2.9498 3.4935 -2.4601 32 1 6.0155 2.3562 -0.4093 33 1 5.4500 1.5958 -1.9161 34 1 7.8361 3.4831 -1.5179 35 1 7.4059 2.8063 -3.1070 36 1 10.7654 4.2244 -3.6227 37 1 3.9256 1.6344 1.0737 38 1 3.9905 0.5324 -0.3351 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131486625.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:57 Heat of formation + Delta-G solvation = -8.902292 kcal Electronic energy + Delta-G solvation = -16623.628922 eV Core-core repulsion = 14078.477683 eV Total energy + Delta-G solvation = -2545.151239 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.50653 -38.12750 -35.91910 -35.16016 -33.49014 -30.92199 -29.60114 -27.93847 -24.91496 -24.00088 -23.42935 -21.99604 -20.55129 -18.55995 -18.32216 -17.23323 -16.63393 -16.35693 -15.58575 -15.20338 -14.91228 -14.43725 -14.37661 -14.27047 -14.04045 -13.84314 -13.49984 -13.30006 -12.99793 -12.87565 -12.58812 -12.44182 -12.28858 -12.16589 -12.10741 -11.93895 -11.62273 -11.38090 -11.32585 -11.29313 -11.10304 -10.55899 -9.49023 -8.20334 -6.28956 1.40701 1.42070 1.49454 1.93066 1.96512 2.40852 3.00733 3.14458 3.24053 3.67114 3.72649 3.96051 4.14505 4.22419 4.35164 4.42049 4.52184 4.56506 4.61803 4.75607 4.78682 4.85409 4.90227 4.93146 5.02738 5.04122 5.09909 5.21697 5.24623 5.44739 5.45687 5.51858 5.59784 5.77439 5.88169 6.00784 6.20169 6.73723 6.85356 7.39572 8.90489 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.055648 B = 0.004715 C = 0.004493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.042744 B = 5936.986406 C = 6230.618333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.114 4.114 3 C -0.085 4.085 4 H 0.088 0.912 5 C -0.115 4.115 6 C 0.024 3.976 7 N -0.516 5.516 8 C 0.062 3.938 9 C 0.019 3.981 10 H 0.120 0.880 11 C 0.256 3.744 12 N -0.506 5.506 13 C 0.040 3.960 14 C -0.541 4.541 15 H 0.053 0.947 16 C 0.012 3.988 17 N -0.923 5.923 18 Si 0.949 3.051 19 H -0.262 1.262 20 H -0.281 1.281 21 H -0.281 1.281 22 C 0.033 3.967 23 H 0.051 0.949 24 H 0.059 0.941 25 H 0.060 0.940 26 H 0.053 0.947 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.025 0.975 31 H 0.061 0.939 32 H 0.113 0.887 33 H 0.035 0.965 34 H 0.038 0.962 35 H -0.001 1.001 36 H 0.265 0.735 37 H 0.097 0.903 38 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.635 -7.562 10.239 19.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.151 4.151 3 C -0.104 4.104 4 H 0.106 0.894 5 C -0.153 4.153 6 C -0.105 4.105 7 N -0.239 5.239 8 C -0.068 4.068 9 C -0.003 4.003 10 H 0.138 0.862 11 C -0.059 4.059 12 N -0.184 5.184 13 C 0.001 3.999 14 C -0.580 4.580 15 H 0.071 0.929 16 C -0.187 4.187 17 N -0.563 5.563 18 Si 0.775 3.225 19 H -0.187 1.187 20 H -0.206 1.206 21 H -0.207 1.207 22 C -0.094 4.094 23 H 0.070 0.930 24 H 0.078 0.922 25 H 0.079 0.921 26 H 0.072 0.928 27 H 0.093 0.907 28 H 0.090 0.910 29 H 0.092 0.908 30 H 0.044 0.956 31 H 0.079 0.921 32 H 0.131 0.869 33 H 0.054 0.946 34 H 0.056 0.944 35 H 0.017 0.983 36 H 0.074 0.926 37 H 0.115 0.885 38 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -15.411 -6.986 9.065 19.196 hybrid contribution 1.086 0.088 -1.055 1.517 sum -14.325 -6.898 8.010 17.803 Atomic orbital electron populations 1.21784 0.95085 1.01948 1.02042 1.21577 0.96536 0.94897 1.02134 1.21926 0.94050 0.96735 0.97688 0.89358 1.22392 0.95321 1.00716 0.96841 1.23299 0.94152 0.99761 0.93259 1.65438 1.01790 1.42199 1.14520 1.22281 0.90662 0.94431 0.99399 1.19212 0.93345 1.01332 0.86418 0.86219 1.29514 0.90907 0.91193 0.94319 1.81016 1.13844 1.10843 1.12675 1.18977 0.88151 0.95823 0.96950 1.21514 0.95418 1.01767 1.39253 0.92893 1.25715 0.96948 0.99579 0.96450 1.70024 1.04366 1.33852 1.48051 0.85738 0.77149 0.80633 0.78998 1.18708 1.20576 1.20707 1.23296 0.95707 0.91822 0.98613 0.93036 0.92191 0.92115 0.92840 0.90740 0.90988 0.90763 0.95637 0.92056 0.86935 0.94641 0.94406 0.98270 0.92643 0.88512 0.93492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.74 71.98 0.70 -1.30 16 2 C -0.11 -1.71 5.13 30.60 0.16 -1.55 16 3 C -0.09 -1.54 3.09 -9.90 -0.03 -1.57 16 4 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 5 C -0.11 -2.51 6.14 31.49 0.19 -2.32 16 6 C 0.02 0.69 4.72 86.45 0.41 1.09 16 7 N -0.52 -14.07 5.37 -881.47 -4.73 -18.80 16 8 C 0.06 1.86 4.49 86.30 0.39 2.25 16 9 C 0.02 0.71 2.42 -12.60 -0.03 0.68 16 10 H 0.12 4.31 8.14 -2.38 -0.02 4.29 16 11 C 0.26 10.72 10.65 89.44 0.95 11.67 16 12 N -0.51 -22.57 17.69 20.00 0.35 -22.22 16 13 C 0.04 1.88 4.42 29.85 0.13 2.01 16 14 C -0.54 -29.23 8.60 25.60 0.22 -29.01 16 15 H 0.05 2.83 7.59 -2.91 -0.02 2.81 16 16 C 0.01 0.67 5.46 84.65 0.46 1.13 16 17 N -0.92 -53.47 13.29 21.45 0.28 -53.18 16 18 Si 0.95 43.84 29.54 68.60 2.03 45.87 16 19 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 20 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 21 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 22 C 0.03 0.69 6.03 86.45 0.52 1.21 16 23 H 0.05 0.73 6.93 -2.39 -0.02 0.71 16 24 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.07 1.52 6.84 -2.39 -0.02 1.50 16 30 H 0.03 0.81 7.72 -2.39 -0.02 0.79 16 31 H 0.06 2.06 5.80 -2.39 -0.01 2.05 16 32 H 0.11 2.98 8.13 -2.39 -0.02 2.97 16 33 H 0.04 1.11 7.88 -2.38 -0.02 1.09 16 34 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 36 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 37 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.05 0.97 7.72 -2.39 -0.02 0.95 16 Total: -1.00 -61.61 306.42 3.02 -58.59 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: 1.01 Total: 5.45 kcal Atomic # 6 Polarization: -19.78 SS G_CDS: 4.07 Total: -15.71 kcal Atomic # 7 Polarization: -90.10 SS G_CDS: -4.10 Total: -94.20 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -61.61 3.02 -58.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131486625.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.688 kcal (2) G-P(sol) polarization free energy of solvation -61.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds