Wall clock time and date at job start Sun Mar 29 2020 21:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 H 1.09005 * 110.63153 * 308.10723 * 3 2 1 5 5 C 1.55147 * 110.70689 * 71.40207 * 3 2 1 6 6 C 1.54907 * 101.65181 * 154.03818 * 5 3 2 7 7 N 1.47839 * 104.79675 * 322.92799 * 6 5 3 8 8 C 1.46897 * 110.99822 * 146.36527 * 7 6 5 9 9 C 1.52999 * 109.47407 * 69.16047 * 8 7 6 10 10 H 1.09005 * 109.46812 * 54.99440 * 9 8 7 11 11 C 1.47208 * 109.46825 * 295.00385 * 9 8 7 12 12 N 6.67821 * 109.40566 * 21.08948 * 2 1 3 13 13 C 1.52996 * 109.47512 * 175.00072 * 9 8 7 14 14 C 1.50702 * 109.47051 * 184.99943 * 13 9 8 15 15 H 1.07998 * 120.00320 * 359.97438 * 14 13 9 16 16 C 1.37881 * 120.00068 * 179.97438 * 14 13 9 17 17 N 1.31513 * 119.99654 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 119.99969 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.47130 * 90.00144 * 18 16 14 20 20 H 1.48507 * 109.47024 * 209.99787 * 18 16 14 21 21 H 1.48494 * 109.47505 * 329.99695 * 18 16 14 22 22 C 1.47447 * 108.56915 * 24.10167 * 7 6 5 23 23 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 25 25 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 26 26 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 27 27 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 28 28 H 1.09006 * 110.99006 * 272.13030 * 5 3 2 29 29 H 1.09000 * 110.98787 * 35.94575 * 5 3 2 30 30 H 1.09004 * 110.36962 * 204.10080 * 6 5 3 31 31 H 1.08995 * 110.37390 * 81.76279 * 6 5 3 32 32 H 1.09006 * 109.47405 * 189.15543 * 8 7 6 33 33 H 1.08997 * 109.47569 * 309.15894 * 8 7 6 34 34 H 1.09000 * 109.47188 * 304.99785 * 13 9 8 35 35 H 1.08998 * 109.47416 * 65.00187 * 13 9 8 36 36 H 0.97005 * 119.99650 * 180.02562 * 17 16 14 37 37 H 1.09004 * 109.88584 * 239.60320 * 22 7 6 38 38 H 1.08995 * 110.02677 * 118.48912 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5744 2.0144 -0.8027 5 6 1.7865 2.1140 1.3755 6 6 2.8991 3.1912 1.4075 7 7 4.0641 2.5502 0.7613 8 6 4.8577 3.5335 0.0123 9 6 5.5484 4.4843 0.9919 10 1 6.1343 3.9067 1.7069 11 6 4.5327 5.2703 1.7114 12 7 3.7489 5.8769 2.2665 13 6 6.4721 5.4290 0.2205 14 6 7.2440 6.2824 1.1936 15 1 7.0907 6.1633 2.2560 16 6 8.1459 7.2154 0.7275 17 7 8.3322 7.3608 -0.5662 18 14 9.1021 8.2738 1.9337 19 1 10.3714 7.5917 2.2925 20 1 9.4051 9.5863 1.3084 21 1 8.2901 8.4849 3.1589 22 6 3.5776 1.4777 -0.1259 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8934 -0.5139 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 0.7981 2.5723 1.4100 29 1 1.9120 1.3986 2.1882 30 1 3.1367 3.4608 2.4366 31 1 2.5905 4.0724 0.8452 32 1 5.6101 3.0158 -0.5829 33 1 4.2025 4.1035 -0.6464 34 1 7.1679 4.8450 -0.3820 35 1 5.8762 6.0687 -0.4305 36 1 8.9670 8.0169 -0.8940 37 1 3.9971 0.5207 0.1847 38 1 3.8605 1.6892 -1.1570 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131486870.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:59 Heat of formation + Delta-G solvation = 6.151585 kcal Electronic energy + Delta-G solvation = -16612.801478 eV Core-core repulsion = 14068.303024 eV Total energy + Delta-G solvation = -2544.498454 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.42021 -36.59984 -34.45066 -33.55613 -31.89408 -29.75627 -28.57898 -26.31064 -23.44040 -23.02323 -21.71182 -20.67607 -20.13772 -16.89989 -16.46637 -15.75905 -15.43085 -14.52545 -14.50519 -14.09751 -13.72550 -13.34162 -13.07567 -12.75174 -12.45662 -12.30777 -12.18828 -12.09464 -11.91423 -11.35537 -11.15450 -11.08238 -10.93967 -10.80676 -10.66231 -10.59255 -10.53898 -10.36714 -10.21254 -9.50062 -9.20174 -8.44095 -8.15867 -6.08267 -4.11159 3.30425 3.37027 3.41917 3.62855 3.68838 4.12796 4.42571 4.48930 4.62394 4.75020 4.86403 5.09426 5.21185 5.29758 5.32267 5.39989 5.42334 5.59863 5.62510 5.71649 5.75435 5.79612 5.88641 5.96916 5.98988 6.07451 6.12088 6.21185 6.31709 6.40896 6.57896 7.10906 7.24010 7.45183 7.55077 7.87115 8.25063 8.46189 8.93449 9.54166 11.02704 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.055669 B = 0.004700 C = 0.004475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.851686 B = 5956.250782 C = 6255.641480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.111 4.111 3 C -0.112 4.112 4 H 0.073 0.927 5 C -0.122 4.122 6 C 0.038 3.962 7 N -0.530 5.530 8 C 0.058 3.942 9 C 0.008 3.992 10 H 0.110 0.890 11 C 0.249 3.751 12 N -0.482 5.482 13 C 0.032 3.968 14 C -0.525 4.525 15 H 0.057 0.943 16 C 0.062 3.938 17 N -0.892 5.892 18 Si 0.892 3.108 19 H -0.278 1.278 20 H -0.286 1.286 21 H -0.274 1.274 22 C 0.046 3.954 23 H 0.052 0.948 24 H 0.054 0.946 25 H 0.052 0.948 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.047 0.953 32 H 0.092 0.908 33 H 0.039 0.961 34 H 0.039 0.961 35 H 0.023 0.977 36 H 0.262 0.738 37 H 0.077 0.923 38 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.984 -14.407 -1.098 18.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.149 4.149 3 C -0.131 4.131 4 H 0.091 0.909 5 C -0.161 4.161 6 C -0.090 4.090 7 N -0.254 5.254 8 C -0.071 4.071 9 C -0.014 4.014 10 H 0.127 0.873 11 C -0.067 4.067 12 N -0.159 5.159 13 C -0.007 4.007 14 C -0.563 4.563 15 H 0.075 0.925 16 C -0.140 4.140 17 N -0.531 5.531 18 Si 0.719 3.281 19 H -0.204 1.204 20 H -0.212 1.212 21 H -0.199 1.199 22 C -0.082 4.082 23 H 0.071 0.929 24 H 0.073 0.927 25 H 0.071 0.929 26 H 0.083 0.917 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.093 0.907 30 H 0.098 0.902 31 H 0.065 0.935 32 H 0.111 0.889 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.042 0.958 36 H 0.072 0.928 37 H 0.096 0.904 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.727 -13.589 -0.014 17.949 hybrid contribution 0.436 0.924 -0.261 1.055 sum -11.290 -12.665 -0.275 16.969 Atomic orbital electron populations 1.21780 0.95996 1.01346 1.01842 1.21483 0.95714 0.95641 1.02082 1.22458 0.96169 0.96586 0.97872 0.90853 1.22786 0.98342 0.97929 0.97003 1.23248 0.89488 0.95911 1.00343 1.63655 1.20377 1.11383 1.29976 1.22457 0.97056 0.92776 0.94769 1.19310 0.91311 0.94253 0.96512 0.87255 1.29175 0.92626 0.92253 0.92687 1.81024 1.12884 1.11253 1.10743 1.19166 0.93051 0.93214 0.95233 1.21151 1.22621 1.19575 0.92990 0.92502 1.24955 0.96879 0.97033 0.95129 1.69942 1.35626 1.35221 1.12311 0.86587 0.80318 0.79850 0.81314 1.20427 1.21179 1.19873 1.22883 0.93153 0.96243 0.95916 0.92936 0.92664 0.92911 0.91655 0.91961 0.91309 0.90732 0.90231 0.93487 0.88947 0.94279 0.94259 0.95823 0.92821 0.90429 0.92608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.80 37.16 0.36 -0.82 16 2 C -0.11 -0.94 5.29 -26.73 -0.14 -1.08 16 3 C -0.11 -1.15 2.92 -88.79 -0.26 -1.41 16 4 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 5 C -0.12 -1.41 5.92 -24.59 -0.15 -1.56 16 6 C 0.04 0.55 4.73 -2.30 -0.01 0.54 16 7 N -0.53 -7.58 5.16 -231.25 -1.19 -8.77 16 8 C 0.06 0.91 4.26 -3.83 -0.02 0.89 16 9 C 0.01 0.15 2.42 -93.41 -0.23 -0.07 16 10 H 0.11 2.02 8.14 -51.93 -0.42 1.60 16 11 C 0.25 5.18 10.45 -20.76 -0.22 4.96 16 12 N -0.48 -10.64 17.82 42.15 0.75 -9.89 16 13 C 0.03 0.75 4.42 -27.88 -0.12 0.63 16 14 C -0.53 -14.17 8.60 -34.44 -0.30 -14.47 16 15 H 0.06 1.53 7.59 -52.49 -0.40 1.13 16 16 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 17 N -0.89 -25.74 13.29 55.43 0.74 -25.01 16 18 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 22 C 0.05 0.53 6.45 -2.83 -0.02 0.51 16 23 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.05 0.44 7.68 -51.93 -0.40 0.04 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.55 8.00 -51.93 -0.42 0.14 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.07 0.83 7.94 -51.93 -0.41 0.41 16 30 H 0.08 1.30 6.94 -51.93 -0.36 0.94 16 31 H 0.05 0.76 6.72 -51.93 -0.35 0.41 16 32 H 0.09 1.32 8.03 -51.93 -0.42 0.90 16 33 H 0.04 0.62 7.85 -51.93 -0.41 0.21 16 34 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 37 H 0.08 0.84 7.82 -51.93 -0.41 0.43 16 38 H 0.06 0.62 7.56 -51.93 -0.39 0.22 16 LS Contribution 307.43 15.07 4.63 4.63 Total: -1.00 -29.24 307.43 -7.76 -37.00 By element: Atomic # 1 Polarization: 2.28 SS G_CDS: -6.47 Total: -4.20 kcal Atomic # 6 Polarization: -9.05 SS G_CDS: -1.19 Total: -10.23 kcal Atomic # 7 Polarization: -43.97 SS G_CDS: 0.29 Total: -43.67 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.24 -7.76 -37.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131486870.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.147 kcal (2) G-P(sol) polarization free energy of solvation -29.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds