Wall clock time and date at job start Sun Mar 29 2020 21:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 H 1.09005 * 110.63153 * 308.10723 * 3 2 1 5 5 C 1.55147 * 110.70689 * 71.40207 * 3 2 1 6 6 C 1.54907 * 101.65181 * 154.03818 * 5 3 2 7 7 N 1.47839 * 104.79675 * 322.92799 * 6 5 3 8 8 C 1.46897 * 110.99822 * 146.36527 * 7 6 5 9 9 C 1.52999 * 109.47407 * 69.16047 * 8 7 6 10 10 H 1.09005 * 109.46812 * 54.99440 * 9 8 7 11 11 C 1.47208 * 109.46825 * 295.00385 * 9 8 7 12 12 N 6.67821 * 109.40566 * 21.08948 * 2 1 3 13 13 C 1.52996 * 109.47512 * 175.00072 * 9 8 7 14 14 C 1.50702 * 109.47051 * 184.99943 * 13 9 8 15 15 H 1.07998 * 120.00320 * 359.97438 * 14 13 9 16 16 C 1.37881 * 120.00068 * 179.97438 * 14 13 9 17 17 N 1.31513 * 119.99654 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 119.99969 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.47130 * 90.00144 * 18 16 14 20 20 H 1.48507 * 109.47024 * 209.99787 * 18 16 14 21 21 H 1.48494 * 109.47505 * 329.99695 * 18 16 14 22 22 C 1.47447 * 108.56915 * 24.10167 * 7 6 5 23 23 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 25 25 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 26 26 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 27 27 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 28 28 H 1.09006 * 110.99006 * 272.13030 * 5 3 2 29 29 H 1.09000 * 110.98787 * 35.94575 * 5 3 2 30 30 H 1.09004 * 110.36962 * 204.10080 * 6 5 3 31 31 H 1.08995 * 110.37390 * 81.76279 * 6 5 3 32 32 H 1.09006 * 109.47405 * 189.15543 * 8 7 6 33 33 H 1.08997 * 109.47569 * 309.15894 * 8 7 6 34 34 H 1.09000 * 109.47188 * 304.99785 * 13 9 8 35 35 H 1.08998 * 109.47416 * 65.00187 * 13 9 8 36 36 H 0.97005 * 119.99650 * 180.02562 * 17 16 14 37 37 H 1.09004 * 109.88584 * 239.60320 * 22 7 6 38 38 H 1.08995 * 110.02677 * 118.48912 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5744 2.0144 -0.8027 5 6 1.7865 2.1140 1.3755 6 6 2.8991 3.1912 1.4075 7 7 4.0641 2.5502 0.7613 8 6 4.8577 3.5335 0.0123 9 6 5.5484 4.4843 0.9919 10 1 6.1343 3.9067 1.7069 11 6 4.5327 5.2703 1.7114 12 7 3.7489 5.8769 2.2665 13 6 6.4721 5.4290 0.2205 14 6 7.2440 6.2824 1.1936 15 1 7.0907 6.1633 2.2560 16 6 8.1459 7.2154 0.7275 17 7 8.3322 7.3608 -0.5662 18 14 9.1021 8.2738 1.9337 19 1 10.3714 7.5917 2.2925 20 1 9.4051 9.5863 1.3084 21 1 8.2901 8.4849 3.1589 22 6 3.5776 1.4777 -0.1259 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8934 -0.5139 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 0.7981 2.5723 1.4100 29 1 1.9120 1.3986 2.1882 30 1 3.1367 3.4608 2.4366 31 1 2.5905 4.0724 0.8452 32 1 5.6101 3.0158 -0.5829 33 1 4.2025 4.1035 -0.6464 34 1 7.1679 4.8450 -0.3820 35 1 5.8762 6.0687 -0.4305 36 1 8.9670 8.0169 -0.8940 37 1 3.9971 0.5207 0.1847 38 1 3.8605 1.6892 -1.1570 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131486870.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:58 Heat of formation + Delta-G solvation = -10.976310 kcal Electronic energy + Delta-G solvation = -16613.544200 eV Core-core repulsion = 14068.303024 eV Total energy + Delta-G solvation = -2545.241175 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.52648 -38.07982 -35.88086 -35.13739 -33.49373 -30.96080 -29.60519 -27.94821 -24.90720 -23.96295 -23.37451 -21.80444 -20.97708 -18.61536 -18.28360 -17.01180 -16.68610 -16.23521 -15.40408 -15.26144 -14.97076 -14.70021 -14.27001 -14.09903 -14.00761 -13.81286 -13.56146 -13.28687 -13.00577 -12.93426 -12.66202 -12.51797 -12.26536 -12.22555 -12.01938 -11.89737 -11.65493 -11.48279 -11.37044 -11.29305 -11.06054 -10.55674 -9.29652 -8.20397 -6.28785 1.39963 1.41349 1.50926 1.95117 1.98492 2.40891 3.00287 3.14587 3.25852 3.61235 3.74174 3.88892 4.18765 4.28429 4.35329 4.41664 4.49563 4.54758 4.64762 4.71878 4.78051 4.86325 4.94047 4.96200 4.97625 5.04263 5.13534 5.22490 5.28380 5.41174 5.45251 5.54400 5.60628 5.77883 5.99662 6.07636 6.21691 6.75608 6.86109 7.39753 8.90621 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.055669 B = 0.004700 C = 0.004475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.851686 B = 5956.250782 C = 6255.641480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.106 4.106 3 C -0.105 4.105 4 H 0.071 0.929 5 C -0.116 4.116 6 C 0.037 3.963 7 N -0.535 5.535 8 C 0.068 3.932 9 C 0.018 3.982 10 H 0.120 0.880 11 C 0.256 3.744 12 N -0.507 5.507 13 C 0.039 3.961 14 C -0.540 4.540 15 H 0.052 0.948 16 C 0.012 3.988 17 N -0.923 5.923 18 Si 0.950 3.050 19 H -0.265 1.265 20 H -0.283 1.283 21 H -0.277 1.277 22 C 0.043 3.957 23 H 0.062 0.938 24 H 0.050 0.950 25 H 0.052 0.948 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.058 0.942 31 H 0.026 0.974 32 H 0.111 0.889 33 H 0.034 0.966 34 H 0.037 0.963 35 H -0.001 1.001 36 H 0.264 0.736 37 H 0.091 0.909 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.159 -15.898 -0.995 19.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.144 4.144 3 C -0.124 4.124 4 H 0.089 0.911 5 C -0.154 4.154 6 C -0.091 4.091 7 N -0.259 5.259 8 C -0.061 4.061 9 C -0.004 4.004 10 H 0.137 0.863 11 C -0.060 4.060 12 N -0.184 5.184 13 C 0.001 3.999 14 C -0.578 4.578 15 H 0.071 0.929 16 C -0.187 4.187 17 N -0.563 5.563 18 Si 0.776 3.224 19 H -0.190 1.190 20 H -0.209 1.209 21 H -0.202 1.202 22 C -0.084 4.084 23 H 0.081 0.919 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.086 0.914 27 H 0.091 0.909 28 H 0.093 0.907 29 H 0.100 0.900 30 H 0.077 0.923 31 H 0.045 0.955 32 H 0.129 0.871 33 H 0.052 0.948 34 H 0.056 0.944 35 H 0.017 0.983 36 H 0.073 0.927 37 H 0.109 0.891 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -11.906 -15.097 0.092 19.227 hybrid contribution 0.472 1.379 -0.292 1.487 sum -11.435 -13.717 -0.200 17.859 Atomic orbital electron populations 1.21777 0.95495 1.02013 1.01664 1.21450 0.96097 0.94136 1.02724 1.22427 0.95327 0.97821 0.96856 0.91062 1.22760 0.97401 0.97108 0.98138 1.23153 0.90819 0.96331 0.98771 1.63610 1.20426 1.11260 1.30585 1.22329 0.97477 0.92571 0.93742 1.19232 0.90592 0.93773 0.96761 0.86275 1.29523 0.92421 0.91838 0.92205 1.81010 1.13841 1.11921 1.11657 1.18981 0.93102 0.93239 0.94621 1.21539 1.22824 1.20057 0.93392 0.92940 1.25720 0.97996 0.98370 0.96652 1.70034 1.36449 1.36052 1.13772 0.85669 0.79360 0.78372 0.79029 1.19047 1.20892 1.20172 1.23002 0.94029 0.95538 0.95840 0.91880 0.93038 0.92935 0.91397 0.90924 0.90724 0.90032 0.92316 0.95541 0.87083 0.94772 0.94434 0.98272 0.92660 0.89118 0.91805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.80 71.98 0.71 -1.29 16 2 C -0.11 -1.50 5.29 30.59 0.16 -1.34 16 3 C -0.10 -1.94 2.92 -9.61 -0.03 -1.97 16 4 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 5 C -0.12 -2.50 5.92 31.98 0.19 -2.31 16 6 C 0.04 1.07 4.73 86.77 0.41 1.48 16 7 N -0.53 -14.53 5.16 -885.55 -4.57 -19.11 16 8 C 0.07 2.05 4.26 86.30 0.37 2.42 16 9 C 0.02 0.69 2.42 -12.60 -0.03 0.66 16 10 H 0.12 4.30 8.14 -2.38 -0.02 4.28 16 11 C 0.26 10.72 10.45 89.44 0.93 11.66 16 12 N -0.51 -22.63 17.82 20.01 0.36 -22.28 16 13 C 0.04 1.86 4.42 29.85 0.13 1.99 16 14 C -0.54 -29.20 8.60 25.60 0.22 -28.98 16 15 H 0.05 2.82 7.59 -2.91 -0.02 2.80 16 16 C 0.01 0.64 5.46 84.66 0.46 1.10 16 17 N -0.92 -53.47 13.29 21.45 0.28 -53.19 16 18 Si 0.95 43.93 29.54 68.60 2.03 45.95 16 19 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 20 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 21 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 22 C 0.04 0.89 6.45 86.65 0.56 1.45 16 23 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 24 H 0.05 0.71 7.68 -2.39 -0.02 0.69 16 25 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.07 0.95 8.00 -2.39 -0.02 0.93 16 27 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 29 H 0.08 1.65 7.94 -2.39 -0.02 1.63 16 30 H 0.06 1.92 6.94 -2.38 -0.02 1.90 16 31 H 0.03 0.86 6.72 -2.39 -0.02 0.85 16 32 H 0.11 2.95 8.03 -2.38 -0.02 2.93 16 33 H 0.03 1.07 7.85 -2.39 -0.02 1.05 16 34 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 36 H 0.26 14.51 8.31 -92.70 -0.77 13.73 16 37 H 0.09 1.68 7.82 -2.39 -0.02 1.66 16 38 H 0.06 1.24 7.56 -2.39 -0.02 1.22 16 Total: -1.00 -61.70 307.43 3.19 -58.51 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: 1.01 Total: 5.23 kcal Atomic # 6 Polarization: -19.21 SS G_CDS: 4.08 Total: -15.12 kcal Atomic # 7 Polarization: -90.64 SS G_CDS: -3.93 Total: -94.57 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.95 kcal Total: -61.70 3.19 -58.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131486870.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.537 kcal (2) G-P(sol) polarization free energy of solvation -61.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds