Wall clock time and date at job start Sun Mar 29 2020 21:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.52990 * 109.47182 * 42.67075 * 3 2 1 5 5 N 1.46902 * 109.47224 * 179.61433 * 4 3 2 6 6 C 1.46904 * 110.99912 * 288.00603 * 5 4 3 7 7 C 1.50699 * 109.47142 * 160.35769 * 6 5 4 8 8 H 1.07996 * 120.00096 * 4.65304 * 7 6 5 9 9 C 1.37872 * 119.99930 * 184.65748 * 7 6 5 10 10 N 1.31520 * 120.00208 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 120.00204 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.46991 * 59.99251 * 11 9 7 13 13 H 1.48493 * 109.47301 * 179.97438 * 11 9 7 14 14 H 1.48495 * 109.46840 * 299.99913 * 11 9 7 15 15 C 1.46899 * 111.00160 * 164.05545 * 5 4 3 16 16 C 1.53004 * 109.46874 * 293.95200 * 15 5 4 17 17 C 1.54263 * 110.03044 * 292.90765 * 16 15 5 18 18 C 1.54961 * 104.16078 * 217.13589 * 17 16 15 19 19 C 1.54892 * 102.77833 * 37.89120 * 18 17 16 20 20 C 1.53877 * 110.03155 * 175.69287 * 16 15 5 21 21 H 1.08998 * 109.47229 * 282.67113 * 3 2 1 22 22 H 1.09001 * 109.47157 * 162.67464 * 3 2 1 23 23 H 1.09003 * 109.47285 * 59.61317 * 4 3 2 24 24 H 1.08997 * 109.47401 * 299.61304 * 4 3 2 25 25 H 1.08997 * 109.47080 * 280.35705 * 6 5 4 26 26 H 1.08998 * 109.46991 * 40.35273 * 6 5 4 27 27 H 0.96997 * 120.00169 * 180.02562 * 10 9 7 28 28 H 1.09001 * 109.47224 * 53.95396 * 15 5 4 29 29 H 1.09002 * 109.47066 * 173.95151 * 15 5 4 30 30 H 1.08999 * 110.01526 * 54.30003 * 16 15 5 31 31 H 1.08995 * 110.49041 * 335.78610 * 17 16 15 32 32 H 1.09001 * 110.48706 * 98.42813 * 17 16 15 33 33 H 1.09000 * 110.72416 * 279.57472 * 18 17 16 34 34 H 1.09006 * 110.92737 * 156.29563 * 18 17 16 35 35 H 1.08999 * 110.48787 * 203.41005 * 19 18 17 36 36 H 1.09000 * 110.60071 * 80.81452 * 19 18 17 37 37 H 1.08995 * 110.03105 * 238.56994 * 20 16 15 38 38 H 1.08999 * 110.03358 * 359.95095 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1185 -1.0597 -0.9776 5 7 4.5875 -1.0527 -0.9845 6 6 5.1051 0.1440 -1.6613 7 6 6.5352 0.3764 -1.2469 8 1 7.0358 -0.3379 -0.6101 9 6 7.2045 1.5011 -1.6807 10 7 6.5951 2.3708 -2.4565 11 14 8.9771 1.7896 -1.1665 12 1 9.8202 0.6640 -1.6432 13 1 9.4648 3.0595 -1.7618 14 1 9.0554 1.8742 0.3140 15 6 5.1169 -2.2765 -1.6010 16 6 4.7627 -3.4818 -0.7276 17 6 5.5200 -3.4029 0.6140 18 6 5.8863 -4.8752 0.9297 19 6 6.2353 -5.4483 -0.4663 20 6 5.2169 -4.7818 -1.4142 21 1 2.9715 -0.2246 1.0026 22 1 2.9709 0.9819 -0.3060 23 1 2.7494 -0.8383 -1.9791 24 1 2.7613 -2.0417 -0.6677 25 1 5.0584 -0.0002 -2.7407 26 1 4.5013 1.0081 -1.3838 27 1 7.0661 3.1618 -2.7619 28 1 4.6785 -2.4036 -2.5908 29 1 6.2004 -2.1986 -1.6908 30 1 3.6879 -3.5098 -0.5486 31 1 6.4218 -2.7999 0.5082 32 1 4.8757 -2.9940 1.3923 33 1 5.0342 -5.4006 1.3610 34 1 6.7479 -4.9279 1.5953 35 1 6.1129 -6.5314 -0.4756 36 1 7.2528 -5.1778 -0.7485 37 1 4.3626 -5.4411 -1.5676 38 1 5.6888 -4.5542 -2.3700 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132905664.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:46 Heat of formation + Delta-G solvation = 5.564142 kcal Electronic energy + Delta-G solvation = -16846.611506 eV Core-core repulsion = 14302.087578 eV Total energy + Delta-G solvation = -2544.523927 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.57943 -36.86976 -35.77179 -32.68967 -31.24416 -29.33928 -28.37065 -26.62920 -23.97640 -23.07464 -20.60937 -20.07837 -19.00041 -17.27264 -16.47015 -15.69872 -15.09693 -14.72693 -14.51726 -14.11409 -13.76813 -13.41305 -13.05860 -12.92967 -12.54011 -12.15681 -12.06992 -11.68299 -11.36032 -11.01914 -10.92620 -10.87897 -10.74976 -10.70532 -10.66145 -10.50729 -10.38664 -10.18920 -9.95128 -9.56381 -9.25706 -8.44031 -7.34527 -6.04905 -4.05973 2.98567 3.04018 3.32097 3.37033 3.39296 4.19776 4.43061 4.79725 4.92711 4.97793 5.17865 5.31356 5.39464 5.53673 5.57450 5.69327 5.81035 5.85114 5.88481 5.97582 5.99407 6.11272 6.12516 6.23375 6.28317 6.36395 6.41316 6.47998 6.57326 6.73457 6.89376 7.16231 7.28261 7.77491 7.80425 8.04272 8.14084 8.48052 9.01516 9.58441 11.05571 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.013051 B = 0.009141 C = 0.005881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.978496 B = 3062.309365 C = 4760.227554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C 0.221 3.779 3 C -0.027 4.027 4 C 0.058 3.942 5 N -0.531 5.531 6 C 0.188 3.812 7 C -0.503 4.503 8 H 0.063 0.937 9 C 0.056 3.944 10 N -0.900 5.900 11 Si 0.895 3.105 12 H -0.278 1.278 13 H -0.289 1.289 14 H -0.276 1.276 15 C 0.073 3.927 16 C -0.091 4.091 17 C -0.102 4.102 18 C -0.129 4.129 19 C -0.123 4.123 20 C -0.121 4.121 21 H 0.114 0.886 22 H 0.116 0.884 23 H 0.031 0.969 24 H 0.070 0.930 25 H -0.010 1.010 26 H 0.036 0.964 27 H 0.262 0.738 28 H 0.018 0.982 29 H 0.084 0.916 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.056 0.944 36 H 0.064 0.936 37 H 0.056 0.944 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.547 -11.329 4.037 12.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.140 5.140 2 C -0.097 4.097 3 C -0.068 4.068 4 C -0.072 4.072 5 N -0.255 5.255 6 C 0.063 3.937 7 C -0.542 4.542 8 H 0.082 0.918 9 C -0.146 4.146 10 N -0.539 5.539 11 Si 0.723 3.277 12 H -0.204 1.204 13 H -0.215 1.215 14 H -0.202 1.202 15 C -0.055 4.055 16 C -0.110 4.110 17 C -0.140 4.140 18 C -0.167 4.167 19 C -0.161 4.161 20 C -0.159 4.159 21 H 0.132 0.868 22 H 0.134 0.866 23 H 0.049 0.951 24 H 0.088 0.912 25 H 0.008 0.992 26 H 0.054 0.946 27 H 0.071 0.929 28 H 0.037 0.963 29 H 0.103 0.897 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.074 0.926 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.053 -11.122 4.417 12.350 hybrid contribution 1.126 0.326 -0.713 1.373 sum -1.927 -10.796 3.704 11.575 Atomic orbital electron populations 1.81151 1.13297 1.09770 1.09773 1.29517 0.95529 0.92322 0.92306 1.19398 0.79902 1.03678 1.03802 1.21920 0.91347 0.97379 0.96581 1.62070 1.03336 1.03823 1.56275 1.19833 0.95894 0.86272 0.91659 1.21094 0.96529 1.06487 1.30078 0.91838 1.24970 0.98271 0.96035 0.95278 1.69935 1.37154 1.11910 1.34932 0.86602 0.84841 0.77319 0.78892 1.20352 1.21483 1.20164 1.22119 1.01251 0.88585 0.93587 1.21865 0.99536 0.93797 0.95812 1.22259 1.00728 0.94817 0.96198 1.22566 1.00379 0.97245 0.96505 1.22331 0.99343 0.98900 0.95503 1.22182 0.98423 0.96390 0.98906 0.86760 0.86591 0.95106 0.91171 0.99214 0.94596 0.92876 0.96336 0.89730 0.91690 0.90692 0.91897 0.92306 0.92157 0.92560 0.91722 0.92552 0.91818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -7.89 18.54 42.15 0.78 -7.11 16 2 C 0.22 3.30 15.43 -20.76 -0.32 2.98 16 3 C -0.03 -0.38 5.77 -29.52 -0.17 -0.55 16 4 C 0.06 0.89 4.79 -3.83 -0.02 0.87 16 5 N -0.53 -9.74 4.18 -236.07 -0.99 -10.72 16 6 C 0.19 4.37 4.59 -4.97 -0.02 4.35 16 7 C -0.50 -12.99 8.61 -34.44 -0.30 -13.29 16 8 H 0.06 1.62 7.66 -52.49 -0.40 1.22 16 9 C 0.06 1.49 5.46 -17.82 -0.10 1.40 16 10 N -0.90 -25.46 13.29 55.43 0.74 -24.72 16 11 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 16 12 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 13 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 14 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 15 C 0.07 1.23 3.84 -3.82 -0.01 1.22 16 16 C -0.09 -1.26 2.88 -89.50 -0.26 -1.51 16 17 C -0.10 -1.40 6.18 -25.04 -0.15 -1.55 16 18 C -0.13 -1.49 6.91 -24.70 -0.17 -1.66 16 19 C -0.12 -1.40 6.83 -25.07 -0.17 -1.57 16 20 C -0.12 -1.47 6.46 -25.61 -0.17 -1.64 16 21 H 0.11 1.42 8.14 -51.93 -0.42 1.00 16 22 H 0.12 1.74 6.53 -51.93 -0.34 1.40 16 23 H 0.03 0.50 8.05 -51.93 -0.42 0.08 16 24 H 0.07 0.96 5.88 -51.93 -0.31 0.66 16 25 H -0.01 -0.25 8.00 -51.93 -0.42 -0.67 16 26 H 0.04 0.87 6.24 -51.93 -0.32 0.55 16 27 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 28 H 0.02 0.32 8.12 -51.93 -0.42 -0.10 16 29 H 0.08 1.61 7.20 -51.93 -0.37 1.23 16 30 H 0.06 0.87 6.12 -51.93 -0.32 0.55 16 31 H 0.07 1.18 7.77 -51.93 -0.40 0.77 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.79 7.67 -51.93 -0.40 0.40 16 LS Contribution 309.15 15.07 4.66 4.66 Total: -1.00 -28.04 309.15 -7.91 -35.94 By element: Atomic # 1 Polarization: 3.43 SS G_CDS: -6.21 Total: -2.78 kcal Atomic # 6 Polarization: -9.11 SS G_CDS: -1.86 Total: -10.97 kcal Atomic # 7 Polarization: -43.09 SS G_CDS: 0.53 Total: -42.56 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -28.04 -7.91 -35.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132905664.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.508 kcal (2) G-P(sol) polarization free energy of solvation -28.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds