Wall clock time and date at job start Sun Mar 29 2020 21:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.52990 * 109.47182 * 42.67075 * 3 2 1 5 5 N 1.46902 * 109.47224 * 179.61433 * 4 3 2 6 6 C 1.46904 * 110.99912 * 288.00603 * 5 4 3 7 7 C 1.50699 * 109.47142 * 160.35769 * 6 5 4 8 8 H 1.07996 * 120.00096 * 4.65304 * 7 6 5 9 9 C 1.37872 * 119.99930 * 184.65748 * 7 6 5 10 10 N 1.31520 * 120.00208 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 120.00204 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.46991 * 59.99251 * 11 9 7 13 13 H 1.48493 * 109.47301 * 179.97438 * 11 9 7 14 14 H 1.48495 * 109.46840 * 299.99913 * 11 9 7 15 15 C 1.46899 * 111.00160 * 164.05545 * 5 4 3 16 16 C 1.53004 * 109.46874 * 293.95200 * 15 5 4 17 17 C 1.54263 * 110.03044 * 292.90765 * 16 15 5 18 18 C 1.54961 * 104.16078 * 217.13589 * 17 16 15 19 19 C 1.54892 * 102.77833 * 37.89120 * 18 17 16 20 20 C 1.53877 * 110.03155 * 175.69287 * 16 15 5 21 21 H 1.08998 * 109.47229 * 282.67113 * 3 2 1 22 22 H 1.09001 * 109.47157 * 162.67464 * 3 2 1 23 23 H 1.09003 * 109.47285 * 59.61317 * 4 3 2 24 24 H 1.08997 * 109.47401 * 299.61304 * 4 3 2 25 25 H 1.08997 * 109.47080 * 280.35705 * 6 5 4 26 26 H 1.08998 * 109.46991 * 40.35273 * 6 5 4 27 27 H 0.96997 * 120.00169 * 180.02562 * 10 9 7 28 28 H 1.09001 * 109.47224 * 53.95396 * 15 5 4 29 29 H 1.09002 * 109.47066 * 173.95151 * 15 5 4 30 30 H 1.08999 * 110.01526 * 54.30003 * 16 15 5 31 31 H 1.08995 * 110.49041 * 335.78610 * 17 16 15 32 32 H 1.09001 * 110.48706 * 98.42813 * 17 16 15 33 33 H 1.09000 * 110.72416 * 279.57472 * 18 17 16 34 34 H 1.09006 * 110.92737 * 156.29563 * 18 17 16 35 35 H 1.08999 * 110.48787 * 203.41005 * 19 18 17 36 36 H 1.09000 * 110.60071 * 80.81452 * 19 18 17 37 37 H 1.08995 * 110.03105 * 238.56994 * 20 16 15 38 38 H 1.08999 * 110.03358 * 359.95095 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1185 -1.0597 -0.9776 5 7 4.5875 -1.0527 -0.9845 6 6 5.1051 0.1440 -1.6613 7 6 6.5352 0.3764 -1.2469 8 1 7.0358 -0.3379 -0.6101 9 6 7.2045 1.5011 -1.6807 10 7 6.5951 2.3708 -2.4565 11 14 8.9771 1.7896 -1.1665 12 1 9.8202 0.6640 -1.6432 13 1 9.4648 3.0595 -1.7618 14 1 9.0554 1.8742 0.3140 15 6 5.1169 -2.2765 -1.6010 16 6 4.7627 -3.4818 -0.7276 17 6 5.5200 -3.4029 0.6140 18 6 5.8863 -4.8752 0.9297 19 6 6.2353 -5.4483 -0.4663 20 6 5.2169 -4.7818 -1.4142 21 1 2.9715 -0.2246 1.0026 22 1 2.9709 0.9819 -0.3060 23 1 2.7494 -0.8383 -1.9791 24 1 2.7613 -2.0417 -0.6677 25 1 5.0584 -0.0002 -2.7407 26 1 4.5013 1.0081 -1.3838 27 1 7.0661 3.1618 -2.7619 28 1 4.6785 -2.4036 -2.5908 29 1 6.2004 -2.1986 -1.6908 30 1 3.6879 -3.5098 -0.5486 31 1 6.4218 -2.7999 0.5082 32 1 4.8757 -2.9940 1.3923 33 1 5.0342 -5.4006 1.3610 34 1 6.7479 -4.9279 1.5953 35 1 6.1129 -6.5314 -0.4756 36 1 7.2528 -5.1778 -0.7485 37 1 4.3626 -5.4411 -1.5676 38 1 5.6888 -4.5542 -2.3700 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132905664.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:46 Heat of formation + Delta-G solvation = -9.521855 kcal Electronic energy + Delta-G solvation = -16847.265684 eV Core-core repulsion = 14302.087578 eV Total energy + Delta-G solvation = -2545.178105 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.81974 -38.10146 -37.13256 -34.66052 -32.51964 -30.76282 -29.37748 -28.31645 -25.24598 -24.82585 -21.92357 -21.21237 -20.16851 -18.59898 -18.35928 -16.96030 -16.49556 -16.05820 -16.03470 -15.43865 -15.03990 -14.85543 -14.28417 -14.11572 -14.00756 -13.72023 -13.48328 -13.30329 -12.78874 -12.67049 -12.46899 -12.26374 -12.08687 -11.86908 -11.79677 -11.69130 -11.61915 -11.36415 -11.31325 -11.19271 -10.84325 -10.48277 -8.93161 -8.10682 -6.18016 1.47570 1.48566 1.56164 1.74434 1.81253 2.47009 2.92841 3.22515 3.55735 3.90128 3.93430 4.05132 4.16985 4.29315 4.45795 4.57258 4.71542 4.76637 4.84253 4.88049 4.95245 4.96945 5.07842 5.13052 5.14582 5.20409 5.25680 5.32283 5.39025 5.42911 5.59463 5.63344 5.74296 5.78598 6.18373 6.44618 6.59160 6.70665 6.98070 7.50896 8.99202 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.013051 B = 0.009141 C = 0.005881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.978496 B = 3062.309365 C = 4760.227554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C 0.245 3.755 3 C -0.016 4.016 4 C 0.058 3.942 5 N -0.528 5.528 6 C 0.201 3.799 7 C -0.509 4.509 8 H 0.063 0.937 9 C 0.004 3.996 10 N -0.935 5.935 11 Si 0.957 3.043 12 H -0.272 1.272 13 H -0.289 1.289 14 H -0.268 1.268 15 C 0.075 3.925 16 C -0.084 4.084 17 C -0.104 4.104 18 C -0.123 4.123 19 C -0.122 4.122 20 C -0.120 4.120 21 H 0.137 0.863 22 H 0.105 0.895 23 H 0.022 0.978 24 H 0.095 0.905 25 H -0.043 1.043 26 H 0.025 0.975 27 H 0.261 0.739 28 H 0.013 0.987 29 H 0.057 0.943 30 H 0.077 0.923 31 H 0.048 0.952 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.056 0.944 37 H 0.073 0.927 38 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.431 -12.952 5.332 14.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.173 5.173 2 C -0.072 4.072 3 C -0.056 4.056 4 C -0.071 4.071 5 N -0.252 5.252 6 C 0.075 3.925 7 C -0.548 4.548 8 H 0.081 0.919 9 C -0.194 4.194 10 N -0.576 5.576 11 Si 0.783 3.217 12 H -0.198 1.198 13 H -0.215 1.215 14 H -0.192 1.192 15 C -0.053 4.053 16 C -0.103 4.103 17 C -0.141 4.141 18 C -0.161 4.161 19 C -0.160 4.160 20 C -0.158 4.158 21 H 0.155 0.845 22 H 0.123 0.877 23 H 0.040 0.960 24 H 0.114 0.886 25 H -0.025 1.025 26 H 0.043 0.957 27 H 0.070 0.930 28 H 0.032 0.968 29 H 0.076 0.924 30 H 0.095 0.905 31 H 0.067 0.933 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.075 0.925 37 H 0.092 0.908 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.940 -12.769 5.724 14.298 hybrid contribution 1.073 0.804 -1.141 1.760 sum -1.867 -11.965 4.582 12.948 Atomic orbital electron populations 1.81184 1.14262 1.10853 1.11022 1.29470 0.95280 0.91261 0.91167 1.19324 0.79148 1.02599 1.04573 1.21993 0.89205 0.99245 0.96696 1.61985 1.05287 1.02655 1.55230 1.19514 0.95027 0.88042 0.89907 1.21428 0.97813 1.06156 1.29386 0.91908 1.25761 1.02215 0.96000 0.95389 1.70057 1.38760 1.12472 1.36352 0.85619 0.80173 0.77102 0.78829 1.19758 1.21518 1.19246 1.22107 0.99523 0.89363 0.94281 1.21820 1.00216 0.92884 0.95345 1.22221 0.99569 0.96185 0.96150 1.22537 1.01232 0.95505 0.96776 1.22339 0.98591 1.00028 0.95024 1.22188 0.99320 0.95776 0.98551 0.84482 0.87670 0.95993 0.88647 1.02484 0.95716 0.92999 0.96836 0.92416 0.90498 0.93346 0.91584 0.90768 0.91585 0.90587 0.92526 0.90796 0.92663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -16.31 18.54 20.01 0.37 -15.94 16 2 C 0.24 6.95 15.43 89.44 1.38 8.33 16 3 C -0.02 -0.43 5.77 28.79 0.17 -0.26 16 4 C 0.06 1.72 4.79 86.30 0.41 2.13 16 5 N -0.53 -19.27 4.18 -900.79 -3.77 -23.04 16 6 C 0.20 9.57 4.59 85.56 0.39 9.96 16 7 C -0.51 -26.67 8.61 25.60 0.22 -26.45 16 8 H 0.06 3.23 7.66 -2.91 -0.02 3.21 16 9 C 0.00 0.22 5.46 84.65 0.46 0.68 16 10 N -0.94 -53.92 13.29 21.45 0.28 -53.64 16 11 Si 0.96 42.64 29.54 68.60 2.03 44.66 16 12 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 13 H -0.29 -12.83 7.11 99.48 0.71 -12.13 16 14 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 15 C 0.08 2.55 3.84 86.30 0.33 2.88 16 16 C -0.08 -2.17 2.88 -10.07 -0.03 -2.19 16 17 C -0.10 -2.65 6.18 31.69 0.20 -2.46 16 18 C -0.12 -2.50 6.91 31.91 0.22 -2.28 16 19 C -0.12 -2.47 6.83 31.67 0.22 -2.25 16 20 C -0.12 -2.67 6.46 31.32 0.20 -2.47 16 21 H 0.14 3.06 8.14 -2.39 -0.02 3.04 16 22 H 0.11 3.11 6.53 -2.39 -0.02 3.10 16 23 H 0.02 0.70 8.05 -2.39 -0.02 0.68 16 24 H 0.10 2.37 5.88 -2.39 -0.01 2.36 16 25 H -0.04 -2.27 8.00 -2.39 -0.02 -2.29 16 26 H 0.02 1.23 6.24 -2.39 -0.01 1.21 16 27 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 28 H 0.01 0.47 8.12 -2.39 -0.02 0.45 16 29 H 0.06 2.25 7.20 -2.39 -0.02 2.24 16 30 H 0.08 1.82 6.12 -2.39 -0.01 1.81 16 31 H 0.05 1.49 7.77 -2.39 -0.02 1.48 16 32 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 35 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.05 1.32 7.67 -2.39 -0.02 1.30 16 Total: -1.00 -60.23 309.15 4.11 -56.12 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: 1.02 Total: 6.21 kcal Atomic # 6 Polarization: -18.55 SS G_CDS: 4.17 Total: -14.38 kcal Atomic # 7 Polarization: -89.50 SS G_CDS: -3.11 Total: -92.61 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.66 kcal Total: -60.23 4.11 -56.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132905664.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.599 kcal (2) G-P(sol) polarization free energy of solvation -60.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds