Wall clock time and date at job start Sun Mar 29 2020 22:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86802 * 120.00076 * 2 1 4 4 H 1.48496 * 109.47244 * 240.00288 * 3 2 1 5 5 H 1.48505 * 109.46955 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47180 * 119.99967 * 3 2 1 7 7 C 1.38815 * 119.99897 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99513 * 164.29157 * 7 2 1 9 9 N 1.36938 * 119.99965 * 344.28059 * 7 2 1 10 10 C 1.47238 * 121.34501 * 155.44076 * 9 7 2 11 11 C 1.52787 * 107.89204 * 115.69692 * 10 9 7 12 12 C 1.50604 * 110.82213 * 47.42542 * 11 10 9 13 13 C 1.39158 * 117.56690 * 160.45983 * 12 11 10 14 14 Cl 1.73603 * 119.73866 * 359.44036 * 13 12 11 15 15 C 1.38025 * 120.54024 * 179.50777 * 13 12 11 16 16 C 1.38242 * 119.81181 * 359.91636 * 15 13 12 17 17 C 1.37964 * 119.73004 * 0.23677 * 16 15 13 18 18 C 1.37591 * 122.92413 * 340.23104 * 12 11 10 19 19 C 1.46686 * 121.35257 * 335.47312 * 9 7 2 20 20 H 0.97003 * 119.99850 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.77682 * 356.09269 * 10 9 7 22 22 H 1.09009 * 109.82005 * 235.31820 * 10 9 7 23 23 H 1.08995 * 109.20419 * 167.75799 * 11 10 9 24 24 H 1.09001 * 109.19996 * 287.09272 * 11 10 9 25 25 H 1.08003 * 120.09635 * 179.89702 * 15 13 12 26 26 H 1.08001 * 120.13670 * 180.20772 * 16 15 13 27 27 H 1.07998 * 119.72699 * 179.97438 * 17 16 15 28 28 H 1.09000 * 109.43304 * 344.35930 * 19 9 7 29 29 H 1.08997 * 109.44060 * 104.27702 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0600 -1.2195 -0.2538 9 7 1.3640 -2.3661 0.3202 10 6 1.8518 -3.6701 -0.1587 11 6 2.2741 -4.4896 1.0597 12 6 1.2160 -4.4410 2.1304 13 6 1.2383 -5.4357 3.1034 14 17 2.4504 -6.6768 3.0385 15 6 0.3036 -5.4444 4.1190 16 6 -0.6622 -4.4567 4.1726 17 6 -0.6878 -3.4716 3.2070 18 6 0.2490 -3.4636 2.1824 19 6 0.1573 -2.3641 1.1543 20 1 -0.4850 0.8401 0.0004 21 1 2.7065 -3.5242 -0.8193 22 1 1.0562 -4.1884 -0.6941 23 1 2.4316 -5.5251 0.7582 24 1 3.2054 -4.0865 1.4576 25 1 0.3265 -6.2207 4.8695 26 1 -1.3941 -4.4566 4.9668 27 1 -1.4426 -2.7003 3.2488 28 1 0.0668 -1.4022 1.6589 29 1 -0.7182 -2.5278 0.5260 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133817094.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:02 Heat of formation + Delta-G solvation = 33.499783 kcal Electronic energy + Delta-G solvation = -14578.794552 eV Core-core repulsion = 12106.806319 eV Total energy + Delta-G solvation = -2471.988233 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 237.062 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.37931 -36.33313 -35.72720 -32.78028 -31.26519 -30.18735 -28.32647 -25.59866 -23.20111 -22.17546 -21.63306 -19.05548 -16.78872 -16.31301 -15.07531 -14.87379 -14.63953 -14.17453 -13.63233 -13.19399 -12.88119 -12.66378 -12.30107 -11.74644 -11.44842 -11.39862 -11.14288 -10.86623 -10.78267 -10.52366 -10.37126 -10.26832 -9.89579 -9.75421 -8.69103 -8.19898 -7.97369 -6.81252 -5.85787 -3.25310 1.58122 1.76018 2.47310 3.36774 3.42334 3.43937 4.06733 4.45062 5.15388 5.16465 5.29514 5.43556 5.50205 5.74351 5.76749 6.00304 6.11359 6.13266 6.29744 6.50074 6.55816 6.71803 6.81256 6.83491 7.01176 7.14914 7.30834 7.53181 7.73393 8.32355 9.13120 9.75413 10.33388 11.24968 Molecular weight = 237.06amu Principal moments of inertia in cm(-1) A = 0.035062 B = 0.007663 C = 0.006808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.394992 B = 3653.157615 C = 4111.790337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.001 3.999 3 Si 0.906 3.094 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.249 4.249 8 H 0.070 0.930 9 N -0.594 5.594 10 C 0.143 3.857 11 C -0.101 4.101 12 C -0.056 4.056 13 C -0.041 4.041 14 Cl -0.088 7.088 15 C -0.131 4.131 16 C -0.120 4.120 17 C -0.119 4.119 18 C -0.066 4.066 19 C 0.206 3.794 20 H 0.256 0.744 21 H 0.063 0.937 22 H 0.027 0.973 23 H 0.067 0.933 24 H 0.074 0.926 25 H 0.123 0.877 26 H 0.123 0.877 27 H 0.125 0.875 28 H 0.100 0.900 29 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.190 -9.534 6.297 11.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.197 4.197 3 Si 0.736 3.264 4 H -0.208 1.208 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.378 4.378 8 H 0.088 0.912 9 N -0.316 5.316 10 C 0.016 3.984 11 C -0.139 4.139 12 C -0.057 4.057 13 C -0.067 4.067 14 Cl -0.059 7.059 15 C -0.150 4.150 16 C -0.138 4.138 17 C -0.137 4.137 18 C -0.068 4.068 19 C 0.080 3.920 20 H 0.066 0.934 21 H 0.081 0.919 22 H 0.046 0.954 23 H 0.085 0.915 24 H 0.092 0.908 25 H 0.141 0.859 26 H 0.141 0.859 27 H 0.143 0.857 28 H 0.117 0.883 29 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 0.206 -9.463 6.251 11.343 hybrid contribution 0.461 0.690 0.181 0.850 sum 0.667 -8.773 6.432 10.898 Atomic orbital electron populations 1.69987 1.05208 1.25806 1.54408 1.25007 0.95403 0.98385 1.00879 0.86307 0.78859 0.83084 0.78179 1.20817 1.21564 1.20996 1.19147 0.92383 0.84236 1.42080 0.91221 1.44006 1.30113 1.01478 1.55965 1.20923 0.97628 0.87087 0.92762 1.21046 0.96429 1.00451 0.96021 1.19464 0.97409 0.93021 0.95761 1.21088 0.93761 0.92973 0.98906 1.98311 1.56049 1.53414 1.98116 1.20751 0.95743 1.00286 0.98189 1.20903 0.98600 0.94937 0.99362 1.21241 0.99174 0.98807 0.94496 1.21041 0.92437 0.96485 0.96843 1.19804 0.89307 0.94056 0.88835 0.93421 0.91870 0.95449 0.91455 0.90772 0.85944 0.85879 0.85704 0.88257 0.93814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.69 11.09 55.49 0.62 -25.07 15 2 C 0.00 0.04 4.99 -17.43 -0.09 -0.05 15 3 Si 0.91 21.43 29.58 -169.99 -5.03 16.40 15 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 15 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 15 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 15 7 C -0.25 -6.75 9.70 -15.06 -0.15 -6.89 15 8 H 0.07 1.84 7.88 -52.49 -0.41 1.43 15 9 N -0.59 -14.81 2.97 -173.92 -0.52 -15.33 15 10 C 0.14 2.99 6.51 -3.75 -0.02 2.96 15 11 C -0.10 -1.87 5.24 -28.04 -0.15 -2.01 15 12 C -0.06 -1.06 5.77 -104.56 -0.60 -1.66 15 13 C -0.04 -0.69 6.31 -39.32 -0.25 -0.94 15 14 Cl -0.09 -1.30 27.19 -51.86 -1.41 -2.71 15 15 C -0.13 -1.97 9.81 -39.66 -0.39 -2.36 15 16 C -0.12 -1.77 10.05 -39.68 -0.40 -2.17 15 17 C -0.12 -2.04 9.62 -39.46 -0.38 -2.42 15 18 C -0.07 -1.33 5.82 -104.58 -0.61 -1.94 15 19 C 0.21 4.87 4.85 -5.04 -0.02 4.85 15 20 H 0.26 7.01 8.31 -40.82 -0.34 6.67 15 21 H 0.06 1.27 7.96 -51.93 -0.41 0.85 15 22 H 0.03 0.57 8.14 -51.92 -0.42 0.14 15 23 H 0.07 1.11 7.10 -51.93 -0.37 0.74 15 24 H 0.07 1.41 8.14 -51.93 -0.42 0.99 15 25 H 0.12 1.54 8.06 -52.48 -0.42 1.11 15 26 H 0.12 1.43 8.06 -52.49 -0.42 1.01 15 27 H 0.12 1.97 8.05 -52.49 -0.42 1.55 15 28 H 0.10 2.59 6.34 -51.93 -0.33 2.26 15 29 H 0.04 1.10 8.14 -51.93 -0.42 0.68 15 LS Contribution 257.04 15.07 3.87 3.87 Total: -1.00 -28.29 257.04 -8.72 -37.01 By element: Atomic # 1 Polarization: 1.66 SS G_CDS: -3.20 Total: -1.53 kcal Atomic # 6 Polarization: -9.58 SS G_CDS: -3.06 Total: -12.64 kcal Atomic # 7 Polarization: -40.50 SS G_CDS: 0.10 Total: -40.40 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.03 Total: 16.40 kcal Atomic # 17 Polarization: -1.30 SS G_CDS: -1.41 Total: -2.71 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -28.29 -8.72 -37.01 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133817094.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.509 kcal (2) G-P(sol) polarization free energy of solvation -28.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds