Wall clock time and date at job start Sun Mar 29 2020 22:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86802 * 120.00076 * 2 1 4 4 H 1.48496 * 109.47244 * 240.00288 * 3 2 1 5 5 H 1.48505 * 109.46955 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47180 * 119.99967 * 3 2 1 7 7 C 1.38815 * 119.99897 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99513 * 164.29157 * 7 2 1 9 9 N 1.36938 * 119.99965 * 344.28059 * 7 2 1 10 10 C 1.47238 * 121.34501 * 155.44076 * 9 7 2 11 11 C 1.52787 * 107.89204 * 115.69692 * 10 9 7 12 12 C 1.50604 * 110.82213 * 47.42542 * 11 10 9 13 13 C 1.39158 * 117.56690 * 160.45983 * 12 11 10 14 14 Cl 1.73603 * 119.73866 * 359.44036 * 13 12 11 15 15 C 1.38025 * 120.54024 * 179.50777 * 13 12 11 16 16 C 1.38242 * 119.81181 * 359.91636 * 15 13 12 17 17 C 1.37964 * 119.73004 * 0.23677 * 16 15 13 18 18 C 1.37591 * 122.92413 * 340.23104 * 12 11 10 19 19 C 1.46686 * 121.35257 * 335.47312 * 9 7 2 20 20 H 0.97003 * 119.99850 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.77682 * 356.09269 * 10 9 7 22 22 H 1.09009 * 109.82005 * 235.31820 * 10 9 7 23 23 H 1.08995 * 109.20419 * 167.75799 * 11 10 9 24 24 H 1.09001 * 109.19996 * 287.09272 * 11 10 9 25 25 H 1.08003 * 120.09635 * 179.89702 * 15 13 12 26 26 H 1.08001 * 120.13670 * 180.20772 * 16 15 13 27 27 H 1.07998 * 119.72699 * 179.97438 * 17 16 15 28 28 H 1.09000 * 109.43304 * 344.35930 * 19 9 7 29 29 H 1.08997 * 109.44060 * 104.27702 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0600 -1.2195 -0.2538 9 7 1.3640 -2.3661 0.3202 10 6 1.8518 -3.6701 -0.1587 11 6 2.2741 -4.4896 1.0597 12 6 1.2160 -4.4410 2.1304 13 6 1.2383 -5.4357 3.1034 14 17 2.4504 -6.6768 3.0385 15 6 0.3036 -5.4444 4.1190 16 6 -0.6622 -4.4567 4.1726 17 6 -0.6878 -3.4716 3.2070 18 6 0.2490 -3.4636 2.1824 19 6 0.1573 -2.3641 1.1543 20 1 -0.4850 0.8401 0.0004 21 1 2.7065 -3.5242 -0.8193 22 1 1.0562 -4.1884 -0.6941 23 1 2.4316 -5.5251 0.7582 24 1 3.2054 -4.0865 1.4576 25 1 0.3265 -6.2207 4.8695 26 1 -1.3941 -4.4566 4.9668 27 1 -1.4426 -2.7003 3.2488 28 1 0.0668 -1.4022 1.6589 29 1 -0.7182 -2.5278 0.5260 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133817094.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:02 Heat of formation + Delta-G solvation = 18.818861 kcal Electronic energy + Delta-G solvation = -14579.431165 eV Core-core repulsion = 12106.806319 eV Total energy + Delta-G solvation = -2472.624846 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 237.062 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.79528 -37.79218 -37.18348 -34.54495 -32.83682 -31.85191 -29.84764 -27.45332 -24.85710 -23.82481 -23.02118 -20.67753 -18.66739 -17.71991 -16.62007 -16.48576 -16.21995 -15.68260 -15.43157 -14.78664 -14.45452 -14.20879 -13.76206 -13.32678 -13.00668 -12.87141 -12.84005 -12.66950 -12.28757 -12.17603 -11.99766 -11.89289 -11.69614 -11.31745 -10.67457 -9.50358 -9.45539 -8.79749 -7.91705 -5.34290 0.26174 0.42174 1.21184 1.47104 1.49736 1.56277 2.49511 2.72666 3.25397 3.59646 3.85760 3.90323 4.16333 4.27293 4.45289 4.54419 4.63856 4.70972 4.87852 4.96436 5.07325 5.10425 5.31888 5.36772 5.37257 5.53887 5.60746 5.82698 5.96840 6.30681 7.09279 7.77469 8.32862 9.17350 Molecular weight = 237.06amu Principal moments of inertia in cm(-1) A = 0.035062 B = 0.007663 C = 0.006808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.394992 B = 3653.157615 C = 4111.790337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.049 4.049 3 Si 0.970 3.030 4 H -0.274 1.274 5 H -0.292 1.292 6 H -0.280 1.280 7 C -0.263 4.263 8 H 0.072 0.928 9 N -0.613 5.613 10 C 0.139 3.861 11 C -0.089 4.089 12 C -0.075 4.075 13 C -0.048 4.048 14 Cl -0.069 7.069 15 C -0.119 4.119 16 C -0.105 4.105 17 C -0.125 4.125 18 C -0.096 4.096 19 C 0.221 3.779 20 H 0.252 0.748 21 H 0.067 0.933 22 H 0.026 0.974 23 H 0.089 0.911 24 H 0.068 0.932 25 H 0.157 0.843 26 H 0.165 0.835 27 H 0.130 0.870 28 H 0.066 0.934 29 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.670 -10.983 8.024 13.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.244 4.244 3 Si 0.798 3.202 4 H -0.200 1.200 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.393 4.393 8 H 0.089 0.911 9 N -0.336 5.336 10 C 0.013 3.987 11 C -0.127 4.127 12 C -0.076 4.076 13 C -0.074 4.074 14 Cl -0.040 7.040 15 C -0.137 4.137 16 C -0.123 4.123 17 C -0.144 4.144 18 C -0.098 4.098 19 C 0.095 3.905 20 H 0.061 0.939 21 H 0.086 0.914 22 H 0.044 0.956 23 H 0.108 0.892 24 H 0.086 0.914 25 H 0.175 0.825 26 H 0.182 0.818 27 H 0.148 0.852 28 H 0.084 0.916 29 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges 0.703 -10.944 7.977 13.561 hybrid contribution 0.306 1.025 -0.321 1.117 sum 1.009 -9.920 7.656 12.571 Atomic orbital electron populations 1.70151 1.06524 1.26096 1.55602 1.25762 0.96176 1.01364 1.01108 0.85304 0.77554 0.79067 0.78309 1.19970 1.21806 1.20629 1.19482 0.92720 0.85448 1.41661 0.91075 1.44269 1.30345 1.02288 1.56691 1.21065 0.97577 0.85889 0.94140 1.20885 0.96078 1.00956 0.94811 1.19504 0.97398 0.93846 0.96854 1.21154 0.94687 0.92855 0.98742 1.98318 1.55355 1.52277 1.98063 1.21217 0.94275 1.00528 0.97704 1.21315 0.98812 0.93239 0.98960 1.21396 0.98628 0.99930 0.94424 1.20708 0.95024 0.96487 0.97579 1.19373 0.87992 0.94129 0.88997 0.93887 0.91442 0.95561 0.89230 0.91355 0.82510 0.81792 0.85195 0.91567 0.96888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.00 11.09 21.65 0.24 -54.76 15 2 C -0.05 -2.73 4.99 84.86 0.42 -2.30 15 3 Si 0.97 44.82 29.58 68.60 2.03 46.85 15 4 H -0.27 -12.21 7.11 99.48 0.71 -11.50 15 5 H -0.29 -13.48 7.11 99.48 0.71 -12.78 15 6 H -0.28 -12.68 7.11 99.48 0.71 -11.97 15 7 C -0.26 -14.63 9.70 84.03 0.81 -13.81 15 8 H 0.07 3.82 7.88 -2.91 -0.02 3.80 15 9 N -0.61 -31.62 2.97 -704.17 -2.09 -33.71 15 10 C 0.14 5.91 6.51 86.17 0.56 6.47 15 11 C -0.09 -3.24 5.24 29.75 0.16 -3.08 15 12 C -0.08 -2.80 5.77 -19.83 -0.11 -2.91 15 13 C -0.05 -1.48 6.31 22.44 0.14 -1.34 15 14 Cl -0.07 -1.84 27.19 -2.72 -0.07 -1.91 15 15 C -0.12 -3.08 9.81 22.22 0.22 -2.87 15 16 C -0.11 -2.73 10.05 22.21 0.22 -2.50 15 17 C -0.13 -4.18 9.62 22.35 0.21 -3.96 15 18 C -0.10 -3.92 5.82 -19.84 -0.12 -4.03 15 19 C 0.22 10.98 4.85 85.63 0.42 11.39 15 20 H 0.25 14.30 8.31 -92.71 -0.77 13.53 15 21 H 0.07 2.74 7.96 -2.39 -0.02 2.72 15 22 H 0.03 1.11 8.14 -2.38 -0.02 1.09 15 23 H 0.09 2.81 7.10 -2.39 -0.02 2.80 15 24 H 0.07 2.55 8.14 -2.39 -0.02 2.53 15 25 H 0.16 3.03 8.06 -2.91 -0.02 3.01 15 26 H 0.16 2.93 8.06 -2.91 -0.02 2.91 15 27 H 0.13 4.08 8.05 -2.91 -0.02 4.06 15 28 H 0.07 3.65 6.34 -2.39 -0.02 3.64 15 29 H 0.01 0.72 8.14 -2.39 -0.02 0.70 15 Total: -1.00 -62.15 257.04 4.19 -57.96 By element: Atomic # 1 Polarization: 3.38 SS G_CDS: 1.15 Total: 4.53 kcal Atomic # 6 Polarization: -21.89 SS G_CDS: 2.94 Total: -18.95 kcal Atomic # 7 Polarization: -86.62 SS G_CDS: -1.85 Total: -88.48 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Atomic # 17 Polarization: -1.84 SS G_CDS: -0.07 Total: -1.91 kcal Total: -62.15 4.19 -57.96 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133817094.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.778 kcal (2) G-P(sol) polarization free energy of solvation -62.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds