Wall clock time and date at job start Sun Mar 29 2020 21:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46898 * 109.46825 * 2 1 4 4 C 1.46898 * 111.00452 * 287.99966 * 3 2 1 5 5 C 1.50700 * 109.47408 * 160.36604 * 4 3 2 6 6 H 1.08001 * 119.99878 * 4.89924 * 5 4 3 7 7 C 1.37876 * 119.99911 * 184.90260 * 5 4 3 8 8 N 1.31510 * 119.99938 * 179.97438 * 7 5 4 9 9 Si 1.86804 * 120.00184 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.46833 * 89.99924 * 9 7 5 11 11 H 1.48489 * 109.47307 * 210.00082 * 9 7 5 12 12 H 1.48498 * 109.46816 * 330.00650 * 9 7 5 13 13 C 1.46907 * 110.99835 * 164.04364 * 3 2 1 14 14 C 1.50700 * 109.47152 * 293.95722 * 13 3 2 15 15 N 1.31789 * 119.08139 * 269.97690 * 14 13 3 16 16 C 1.32542 * 121.01157 * 179.73092 * 15 14 13 17 17 C 1.38120 * 119.19739 * 0.56702 * 16 15 14 18 18 C 1.39628 * 118.33323 * 359.45024 * 17 16 15 19 19 N 1.38540 * 120.53358 * 180.25655 * 18 17 16 20 20 N 1.31745 * 119.08505 * 90.00158 * 14 13 3 21 21 H 1.08992 * 109.47093 * 299.38058 * 1 2 3 22 22 H 1.08996 * 109.46898 * 59.37863 * 1 2 3 23 23 H 1.09004 * 109.46663 * 179.37984 * 1 2 3 24 24 H 1.08994 * 109.47400 * 240.00215 * 2 1 3 25 25 H 1.09000 * 109.47067 * 119.99787 * 2 1 3 26 26 H 1.08999 * 109.46825 * 280.37057 * 4 3 2 27 27 H 1.09002 * 109.46962 * 40.36164 * 4 3 2 28 28 H 0.97006 * 120.00196 * 179.97438 * 8 7 5 29 29 H 1.08994 * 109.46897 * 173.95330 * 13 3 2 30 30 H 1.09000 * 109.46583 * 53.95497 * 13 3 2 31 31 H 1.07999 * 120.40645 * 180.31107 * 16 15 14 32 32 H 1.08000 * 120.83685 * 179.71700 * 17 16 15 33 33 H 0.96997 * 120.00105 * 359.97438 * 19 18 17 34 34 H 0.96998 * 119.99875 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7956 2.0227 -1.3043 5 6 1.8470 3.5205 -1.1466 6 1 2.1060 3.9545 -0.1921 7 6 1.5633 4.3369 -2.2209 8 7 1.6076 5.6440 -2.0832 9 14 1.1158 3.5863 -3.8719 10 1 -0.3549 3.3951 -3.9464 11 1 1.5529 4.4938 -4.9630 12 1 1.7937 2.2732 -4.0187 13 6 3.4384 1.4418 0.3770 14 6 3.5949 1.0062 1.8112 15 7 3.5262 1.9112 2.7667 16 6 3.6533 1.5697 4.0411 17 6 3.8724 0.2451 4.3651 18 6 3.9399 -0.6882 3.3287 19 7 4.1526 -2.0296 3.6022 20 7 3.7970 -0.2687 2.0748 21 1 -0.3633 0.5041 0.8954 22 1 -0.3633 0.5234 -0.8843 23 1 -0.3633 -1.0277 -0.0111 24 1 1.8934 -0.5138 -0.8899 25 1 1.8934 -0.5138 0.8900 26 1 2.5698 1.7039 -2.0022 27 1 0.8180 1.7310 -1.6881 28 1 1.4084 6.2184 -2.8391 29 1 3.8033 2.4628 0.2655 30 1 4.0128 0.7780 -0.2691 31 1 3.5904 2.3188 4.8166 32 1 3.9843 -0.0619 5.3945 33 1 4.2564 -2.3270 4.5196 34 1 4.1985 -2.6712 2.8762 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135119352.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:45 Heat of formation + Delta-G solvation = 60.530814 kcal Electronic energy + Delta-G solvation = -16601.393715 eV Core-core repulsion = 13955.712978 eV Total energy + Delta-G solvation = -2645.680737 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.71604 -37.07507 -35.43527 -32.85957 -32.35802 -30.89334 -29.89118 -27.98516 -25.40396 -23.53822 -22.35099 -22.06613 -19.72249 -18.03018 -17.25174 -16.73887 -15.71210 -15.34829 -15.21737 -14.75072 -14.28251 -13.80970 -13.63460 -13.44683 -12.89923 -12.37358 -12.00426 -11.64978 -11.58094 -11.31537 -10.92002 -10.77704 -10.52197 -10.40808 -9.99498 -9.86165 -9.66422 -9.18311 -8.89168 -8.47426 -8.32966 -7.32852 -5.95359 -3.91637 1.23840 1.61930 3.30694 3.34138 3.41505 3.43526 4.06309 4.41384 4.49652 4.59185 4.96953 5.03089 5.29621 5.36683 5.60797 5.68243 5.72173 5.85497 6.07147 6.15257 6.27550 6.39915 6.52551 6.61612 6.75793 6.87918 6.96149 6.97795 7.17159 7.69823 7.70935 7.96502 8.05374 8.61782 8.75722 9.18551 9.66414 11.17951 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.035145 B = 0.006435 C = 0.005821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.519305 B = 4349.982291 C = 4808.909725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.043 3.957 3 N -0.516 5.516 4 C 0.163 3.837 5 C -0.505 4.505 6 H 0.085 0.915 7 C 0.068 3.932 8 N -0.900 5.900 9 Si 0.871 3.129 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.269 1.269 13 C 0.126 3.874 14 C 0.385 3.615 15 N -0.532 5.532 16 C 0.176 3.824 17 C -0.307 4.307 18 C 0.432 3.568 19 N -0.843 5.843 20 N -0.577 5.577 21 H 0.057 0.943 22 H 0.058 0.942 23 H 0.045 0.955 24 H 0.023 0.977 25 H 0.070 0.930 26 H -0.010 1.010 27 H 0.030 0.970 28 H 0.262 0.738 29 H 0.113 0.887 30 H 0.047 0.953 31 H 0.163 0.837 32 H 0.135 0.865 33 H 0.408 0.592 34 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.320 -14.957 11.143 19.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.085 4.085 3 N -0.242 5.242 4 C 0.038 3.962 5 C -0.543 4.543 6 H 0.103 0.897 7 C -0.133 4.133 8 N -0.539 5.539 9 Si 0.698 3.302 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.193 1.193 13 C -0.003 4.003 14 C 0.117 3.883 15 N -0.249 5.249 16 C 0.012 3.988 17 C -0.336 4.336 18 C 0.186 3.814 19 N -0.388 5.388 20 N -0.302 5.302 21 H 0.076 0.924 22 H 0.077 0.923 23 H 0.064 0.936 24 H 0.041 0.959 25 H 0.089 0.911 26 H 0.008 0.992 27 H 0.048 0.952 28 H 0.072 0.928 29 H 0.131 0.869 30 H 0.065 0.935 31 H 0.180 0.820 32 H 0.153 0.847 33 H 0.238 0.762 34 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 3.921 -14.184 10.455 18.052 hybrid contribution 0.290 -1.491 -0.419 1.575 sum 4.211 -15.675 10.036 19.083 Atomic orbital electron populations 1.21749 0.95671 0.99887 1.02749 1.22163 0.95691 0.90538 1.00142 1.61908 1.14327 1.14641 1.33286 1.20236 0.95533 0.96070 0.84409 1.21095 1.46175 0.88075 0.98944 0.89689 1.24883 0.95347 0.94701 0.98351 1.69899 1.49991 1.02804 1.31251 0.86932 0.79162 0.79475 0.84596 1.20245 1.21267 1.19336 1.20786 0.91196 1.02787 0.85572 1.23087 0.85687 0.82659 0.96904 1.68397 1.17811 1.38372 1.00361 1.22974 0.88139 0.93836 0.93803 1.22037 1.16132 0.95505 0.99884 1.18531 0.87227 0.86086 0.89541 1.42109 1.80669 1.04562 1.11433 1.67862 1.22758 1.19666 1.19935 0.92406 0.92333 0.93596 0.95867 0.91117 0.99211 0.95235 0.92795 0.86876 0.93463 0.82017 0.84734 0.76232 0.76593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 9.99 37.16 0.37 -2.14 16 2 C 0.04 0.82 5.55 -3.82 -0.02 0.80 16 3 N -0.52 -11.44 4.37 -237.52 -1.04 -12.48 16 4 C 0.16 4.05 3.65 -4.98 -0.02 4.03 16 5 C -0.50 -14.60 9.17 -34.44 -0.32 -14.91 16 6 H 0.09 2.71 7.89 -52.49 -0.41 2.30 16 7 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 8 N -0.90 -27.98 13.96 55.43 0.77 -27.20 16 9 Si 0.87 21.73 27.38 -169.99 -4.65 17.08 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 12 H -0.27 -6.46 6.68 56.52 0.38 -6.08 16 13 C 0.13 2.60 5.22 -4.97 -0.03 2.57 16 14 C 0.39 7.24 6.48 -157.24 -1.02 6.23 16 15 N -0.53 -9.88 10.33 -10.81 -0.11 -9.99 16 16 C 0.18 2.48 11.29 -17.29 -0.20 2.29 16 17 C -0.31 -3.69 10.04 -39.11 -0.39 -4.08 16 18 C 0.43 5.71 7.82 -154.78 -1.21 4.50 16 19 N -0.84 -7.32 9.06 31.24 0.28 -7.03 16 20 N -0.58 -9.53 8.89 -9.97 -0.09 -9.62 16 21 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 22 H 0.06 1.09 6.52 -51.93 -0.34 0.75 16 23 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 24 H 0.02 0.43 8.05 -51.93 -0.42 0.01 16 25 H 0.07 1.30 5.81 -51.93 -0.30 1.00 16 26 H -0.01 -0.24 7.40 -51.93 -0.38 -0.63 16 27 H 0.03 0.73 5.40 -51.93 -0.28 0.45 16 28 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 29 H 0.11 2.54 7.31 -51.93 -0.38 2.16 16 30 H 0.05 0.92 8.12 -51.93 -0.42 0.50 16 31 H 0.16 1.72 8.06 -52.49 -0.42 1.30 16 32 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 33 H 0.41 2.23 8.84 -40.82 -0.36 1.87 16 34 H 0.40 3.22 8.95 -40.82 -0.37 2.85 16 LS Contribution 284.57 15.07 4.29 4.29 Total: -1.00 -33.53 284.57 -7.99 -41.52 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -4.51 Total: 2.26 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: -2.92 Total: 1.19 kcal Atomic # 7 Polarization: -66.15 SS G_CDS: -0.18 Total: -66.33 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.65 Total: 17.08 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -33.53 -7.99 -41.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135119352.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.047 kcal (2) G-P(sol) polarization free energy of solvation -33.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds