Wall clock time and date at job start Sun Mar 29 2020 21:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46898 * 109.46825 * 2 1 4 4 C 1.46898 * 111.00452 * 287.99966 * 3 2 1 5 5 C 1.50700 * 109.47408 * 160.36604 * 4 3 2 6 6 H 1.08001 * 119.99878 * 4.89924 * 5 4 3 7 7 C 1.37876 * 119.99911 * 184.90260 * 5 4 3 8 8 N 1.31510 * 119.99938 * 179.97438 * 7 5 4 9 9 Si 1.86804 * 120.00184 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.46833 * 89.99924 * 9 7 5 11 11 H 1.48489 * 109.47307 * 210.00082 * 9 7 5 12 12 H 1.48498 * 109.46816 * 330.00650 * 9 7 5 13 13 C 1.46907 * 110.99835 * 164.04364 * 3 2 1 14 14 C 1.50700 * 109.47152 * 293.95722 * 13 3 2 15 15 N 1.31789 * 119.08139 * 269.97690 * 14 13 3 16 16 C 1.32542 * 121.01157 * 179.73092 * 15 14 13 17 17 C 1.38120 * 119.19739 * 0.56702 * 16 15 14 18 18 C 1.39628 * 118.33323 * 359.45024 * 17 16 15 19 19 N 1.38540 * 120.53358 * 180.25655 * 18 17 16 20 20 N 1.31745 * 119.08505 * 90.00158 * 14 13 3 21 21 H 1.08992 * 109.47093 * 299.38058 * 1 2 3 22 22 H 1.08996 * 109.46898 * 59.37863 * 1 2 3 23 23 H 1.09004 * 109.46663 * 179.37984 * 1 2 3 24 24 H 1.08994 * 109.47400 * 240.00215 * 2 1 3 25 25 H 1.09000 * 109.47067 * 119.99787 * 2 1 3 26 26 H 1.08999 * 109.46825 * 280.37057 * 4 3 2 27 27 H 1.09002 * 109.46962 * 40.36164 * 4 3 2 28 28 H 0.97006 * 120.00196 * 179.97438 * 8 7 5 29 29 H 1.08994 * 109.46897 * 173.95330 * 13 3 2 30 30 H 1.09000 * 109.46583 * 53.95497 * 13 3 2 31 31 H 1.07999 * 120.40645 * 180.31107 * 16 15 14 32 32 H 1.08000 * 120.83685 * 179.71700 * 17 16 15 33 33 H 0.96997 * 120.00105 * 359.97438 * 19 18 17 34 34 H 0.96998 * 119.99875 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7956 2.0227 -1.3043 5 6 1.8470 3.5205 -1.1466 6 1 2.1060 3.9545 -0.1921 7 6 1.5633 4.3369 -2.2209 8 7 1.6076 5.6440 -2.0832 9 14 1.1158 3.5863 -3.8719 10 1 -0.3549 3.3951 -3.9464 11 1 1.5529 4.4938 -4.9630 12 1 1.7937 2.2732 -4.0187 13 6 3.4384 1.4418 0.3770 14 6 3.5949 1.0062 1.8112 15 7 3.5262 1.9112 2.7667 16 6 3.6533 1.5697 4.0411 17 6 3.8724 0.2451 4.3651 18 6 3.9399 -0.6882 3.3287 19 7 4.1526 -2.0296 3.6022 20 7 3.7970 -0.2687 2.0748 21 1 -0.3633 0.5041 0.8954 22 1 -0.3633 0.5234 -0.8843 23 1 -0.3633 -1.0277 -0.0111 24 1 1.8934 -0.5138 -0.8899 25 1 1.8934 -0.5138 0.8900 26 1 2.5698 1.7039 -2.0022 27 1 0.8180 1.7310 -1.6881 28 1 1.4084 6.2184 -2.8391 29 1 3.8033 2.4628 0.2655 30 1 4.0128 0.7780 -0.2691 31 1 3.5904 2.3188 4.8166 32 1 3.9843 -0.0619 5.3945 33 1 4.2564 -2.3270 4.5196 34 1 4.1985 -2.6712 2.8762 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135119352.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:44 Heat of formation + Delta-G solvation = 34.564607 kcal Electronic energy + Delta-G solvation = -16602.519694 eV Core-core repulsion = 13955.712978 eV Total energy + Delta-G solvation = -2646.806716 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.87723 -38.70015 -36.46165 -34.73206 -33.88035 -32.18523 -31.32949 -29.74501 -27.01168 -24.66162 -24.04373 -23.50906 -21.40245 -19.10803 -18.92655 -18.29767 -16.98769 -16.66491 -16.38461 -16.12949 -15.95178 -15.35532 -15.15888 -14.79489 -14.49649 -14.23856 -13.53167 -13.40370 -12.97320 -12.74884 -12.59455 -12.46639 -12.20771 -11.88941 -11.79611 -11.46001 -11.36780 -10.84732 -10.71692 -10.08911 -9.27657 -9.04240 -8.22186 -6.24959 0.08334 0.53468 1.37470 1.39104 1.50074 2.38624 2.39243 2.80670 3.10269 3.17863 3.43677 3.55917 4.05102 4.20348 4.32132 4.35137 4.48912 4.51068 4.68485 4.69106 4.78984 4.90239 4.94096 5.03671 5.17252 5.31259 5.45347 5.60526 5.97981 6.06160 6.26895 6.32071 6.67602 6.82054 6.89884 7.37406 7.46340 8.94986 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.035145 B = 0.006435 C = 0.005821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.519305 B = 4349.982291 C = 4808.909725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.046 3.954 3 N -0.534 5.534 4 C 0.175 3.825 5 C -0.512 4.512 6 H 0.035 0.965 7 C 0.008 3.992 8 N -0.949 5.949 9 Si 0.946 3.054 10 H -0.264 1.264 11 H -0.281 1.281 12 H -0.250 1.250 13 C 0.133 3.867 14 C 0.366 3.634 15 N -0.578 5.578 16 C 0.157 3.843 17 C -0.285 4.285 18 C 0.421 3.579 19 N -0.819 5.819 20 N -0.589 5.589 21 H 0.045 0.955 22 H 0.045 0.955 23 H 0.081 0.919 24 H 0.032 0.968 25 H 0.078 0.922 26 H -0.008 1.008 27 H 0.037 0.963 28 H 0.266 0.734 29 H 0.076 0.924 30 H 0.054 0.946 31 H 0.191 0.809 32 H 0.180 0.820 33 H 0.426 0.574 34 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.089 -18.073 11.766 21.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.082 4.082 3 N -0.260 5.260 4 C 0.048 3.952 5 C -0.550 4.550 6 H 0.053 0.947 7 C -0.189 4.189 8 N -0.590 5.590 9 Si 0.769 3.231 10 H -0.189 1.189 11 H -0.207 1.207 12 H -0.174 1.174 13 C 0.003 3.997 14 C 0.097 3.903 15 N -0.298 5.298 16 C -0.004 4.004 17 C -0.313 4.313 18 C 0.174 3.826 19 N -0.365 5.365 20 N -0.316 5.316 21 H 0.064 0.936 22 H 0.065 0.935 23 H 0.099 0.901 24 H 0.050 0.950 25 H 0.096 0.904 26 H 0.009 0.991 27 H 0.055 0.945 28 H 0.075 0.925 29 H 0.095 0.905 30 H 0.072 0.928 31 H 0.208 0.792 32 H 0.197 0.803 33 H 0.260 0.740 34 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 3.704 -17.363 11.146 20.963 hybrid contribution 0.435 -0.575 -0.394 0.822 sum 4.139 -17.939 10.753 21.320 Atomic orbital electron populations 1.21732 0.94509 1.01827 1.01520 1.22213 0.96553 0.88561 1.00842 1.61784 1.15647 1.16895 1.31655 1.19973 0.95759 0.93406 0.86044 1.21254 1.45891 0.90727 0.97127 0.94684 1.25834 0.95113 0.95000 1.02952 1.70065 1.51428 1.04641 1.32860 0.85734 0.79479 0.79199 0.78651 1.18936 1.20699 1.17405 1.20534 0.90335 1.00901 0.87916 1.22461 0.88186 0.83820 0.95864 1.68283 1.19646 1.39545 1.02307 1.23516 0.88165 0.95906 0.92764 1.22440 1.12981 0.94151 1.01698 1.18886 0.86930 0.87943 0.88857 1.42063 1.78713 1.02777 1.12907 1.67729 1.23559 1.18398 1.21920 0.93565 0.93549 0.90052 0.95006 0.90372 0.99069 0.94469 0.92517 0.90539 0.92813 0.79223 0.80255 0.74014 0.75857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.62 9.99 71.98 0.72 -3.90 16 2 C 0.05 1.70 5.55 86.31 0.48 2.18 16 3 N -0.53 -24.17 4.37 -905.36 -3.96 -28.13 16 4 C 0.17 8.78 3.65 85.56 0.31 9.09 16 5 C -0.51 -30.93 9.17 25.60 0.23 -30.70 16 6 H 0.03 2.40 7.89 -2.91 -0.02 2.38 16 7 C 0.01 0.47 5.47 84.66 0.46 0.94 16 8 N -0.95 -61.11 13.96 21.45 0.30 -60.81 16 9 Si 0.95 45.02 27.38 68.60 1.88 46.90 16 10 H -0.26 -12.03 7.11 99.48 0.71 -11.32 16 11 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 12 H -0.25 -11.10 6.68 99.48 0.67 -10.44 16 13 C 0.13 5.72 5.22 85.56 0.45 6.16 16 14 C 0.37 14.04 6.48 138.77 0.90 14.94 16 15 N -0.58 -22.04 10.33 -188.11 -1.94 -23.98 16 16 C 0.16 4.25 11.29 84.56 0.95 5.20 16 17 C -0.29 -5.95 10.04 22.58 0.23 -5.72 16 18 C 0.42 10.01 7.82 133.16 1.04 11.05 16 19 N -0.82 -11.17 9.06 -55.09 -0.50 -11.67 16 20 N -0.59 -18.86 8.89 -185.44 -1.65 -20.51 16 21 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 22 H 0.05 1.64 6.52 -2.39 -0.02 1.63 16 23 H 0.08 2.11 8.14 -2.39 -0.02 2.10 16 24 H 0.03 1.12 8.05 -2.39 -0.02 1.10 16 25 H 0.08 2.78 5.81 -2.39 -0.01 2.76 16 26 H -0.01 -0.41 7.40 -2.39 -0.02 -0.43 16 27 H 0.04 1.81 5.40 -2.39 -0.01 1.80 16 28 H 0.27 15.90 8.31 -92.70 -0.77 15.13 16 29 H 0.08 3.76 7.31 -2.39 -0.02 3.74 16 30 H 0.05 2.16 8.12 -2.39 -0.02 2.14 16 31 H 0.19 3.74 8.06 -2.91 -0.02 3.71 16 32 H 0.18 2.05 8.06 -2.91 -0.02 2.02 16 33 H 0.43 2.73 8.84 -92.71 -0.82 1.91 16 34 H 0.41 5.12 8.95 -92.71 -0.83 4.29 16 Total: -1.00 -76.54 284.57 -0.66 -77.20 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -0.57 Total: 11.77 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: 5.78 Total: 9.23 kcal Atomic # 7 Polarization: -137.35 SS G_CDS: -7.75 Total: -145.10 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 1.88 Total: 46.90 kcal Total: -76.54 -0.66 -77.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135119352.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.767 kcal (2) G-P(sol) polarization free energy of solvation -76.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds