Wall clock time and date at job start Sun Mar 29 2020 22:04:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46901 * 110.99935 * 2 1 4 4 C 1.53001 * 109.47480 * 293.96155 * 3 2 1 5 5 C 1.52994 * 109.47210 * 180.02562 * 4 3 2 6 6 C 1.53001 * 117.49623 * 243.74537 * 5 4 3 7 7 C 1.53002 * 117.49876 * 175.08633 * 5 4 3 8 8 C 1.46896 * 111.00480 * 123.95920 * 2 1 3 9 9 C 1.52994 * 109.47323 * 164.07313 * 8 2 1 10 10 H 1.08994 * 109.47629 * 56.13052 * 9 8 2 11 11 C 1.47206 * 109.47028 * 296.13407 * 9 8 2 12 12 N 3.64834 * 127.80616 * 204.41742 * 2 1 3 13 13 C 1.53004 * 109.47471 * 176.13412 * 9 8 2 14 14 C 1.50692 * 109.47445 * 184.99713 * 13 9 8 15 15 H 1.07997 * 119.99942 * 0.02562 * 14 13 9 16 16 C 1.37876 * 120.00158 * 179.97438 * 14 13 9 17 17 N 1.31508 * 119.99818 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00081 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47293 * 90.00274 * 18 16 14 20 20 H 1.48507 * 109.47137 * 210.00256 * 18 16 14 21 21 H 1.48497 * 109.47383 * 330.00234 * 18 16 14 22 22 H 1.09007 * 109.46837 * 301.54822 * 1 2 3 23 23 H 1.08992 * 109.47607 * 61.54914 * 1 2 3 24 24 H 1.08997 * 109.47136 * 181.55248 * 1 2 3 25 25 H 1.09003 * 109.46636 * 53.95806 * 3 2 1 26 26 H 1.08999 * 109.46785 * 173.95608 * 3 2 1 27 27 H 1.09007 * 109.46809 * 299.99979 * 4 3 2 28 28 H 1.09000 * 109.46978 * 59.99436 * 4 3 2 29 29 H 1.09004 * 115.55179 * 29.41419 * 5 4 3 30 30 H 1.08998 * 117.50310 * 359.97438 * 6 5 4 31 31 H 1.08999 * 117.49724 * 145.02055 * 6 5 4 32 32 H 1.09005 * 117.49562 * 214.97384 * 7 5 4 33 33 H 1.08997 * 117.49848 * 359.97438 * 7 5 4 34 34 H 1.08996 * 109.46936 * 284.07508 * 8 2 1 35 35 H 1.09003 * 109.46910 * 44.07254 * 8 2 1 36 36 H 1.08997 * 109.46740 * 305.00370 * 13 9 8 37 37 H 1.09002 * 109.46760 * 64.99484 * 13 9 8 38 38 H 0.97007 * 120.00502 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6313 2.0576 -1.3182 5 6 2.1802 3.4857 -1.3184 6 6 1.1677 4.6316 -1.3726 7 6 2.0199 4.3039 -2.6012 8 6 1.9956 -0.7660 1.1374 9 6 3.4733 -1.0826 0.8989 10 1 4.0207 -0.1555 0.7290 11 6 3.6044 -1.9530 -0.2810 12 7 3.7054 -2.6247 -1.1916 13 6 4.0465 -1.7960 2.1250 14 6 5.5285 -1.9982 1.9414 15 1 6.0132 -1.6521 1.0405 16 6 6.2659 -2.6241 2.9240 17 7 5.6757 -3.0451 4.0213 18 14 8.1030 -2.8741 2.6967 19 1 8.8334 -1.7020 3.2426 20 1 8.5284 -4.1015 3.4164 21 1 8.4079 -3.0176 1.2505 22 1 -0.3633 0.5377 0.8758 23 1 -0.3634 0.4895 -0.9035 24 1 -0.3633 -1.0273 0.0278 25 1 1.5611 1.9273 0.8310 26 1 3.0797 1.3444 0.1082 27 1 2.0656 1.5017 -2.1492 28 1 0.5471 2.0845 -1.4263 29 1 3.0857 3.6415 -0.7319 30 1 0.1107 4.3680 -1.4085 31 1 1.4074 5.5413 -0.8220 32 1 2.8199 4.9983 -2.8585 33 1 1.5239 3.8247 -3.4452 34 1 1.8925 -0.1788 2.0499 35 1 1.4365 -1.6962 1.2390 36 1 3.8698 -1.1899 3.0136 37 1 3.5595 -2.7640 2.2428 38 1 6.1945 -3.4851 4.7129 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135248771.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:44 Heat of formation + Delta-G solvation = 34.393671 kcal Electronic energy + Delta-G solvation = -16322.410239 eV Core-core repulsion = 13779.136454 eV Total energy + Delta-G solvation = -2543.273785 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.55721 -37.26637 -35.57467 -33.58884 -31.84591 -30.25151 -27.41770 -25.36857 -23.62817 -22.51471 -21.71663 -20.92141 -20.41645 -16.73452 -16.46629 -15.85874 -15.45180 -14.92348 -14.53639 -14.32175 -13.86292 -13.61164 -13.09318 -12.62191 -12.38131 -12.09804 -11.91819 -11.68756 -11.62983 -11.51416 -11.29748 -11.17223 -11.06447 -11.02340 -10.62148 -10.51433 -10.26722 -10.12703 -9.91035 -9.50773 -9.20376 -8.44356 -8.16303 -6.08275 -4.11224 3.30121 3.37070 3.42127 3.66843 3.78451 3.88288 4.02361 4.42502 4.65609 4.80005 4.82410 4.95641 5.10808 5.26986 5.29963 5.40152 5.43955 5.48229 5.52935 5.64716 5.73838 5.77004 5.82039 5.95386 5.96185 5.97602 6.06803 6.18315 6.30559 6.40306 6.54462 7.20413 7.22621 7.44437 7.55082 7.87212 8.25136 8.63989 8.93647 9.54201 11.02699 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.026563 B = 0.005065 C = 0.004745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.833447 B = 5526.360536 C = 5899.561081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.547 5.547 3 C 0.054 3.946 4 C -0.085 4.085 5 C -0.149 4.149 6 C -0.183 4.183 7 C -0.182 4.182 8 C 0.062 3.938 9 C 0.011 3.989 10 H 0.099 0.901 11 C 0.258 3.742 12 N -0.482 5.482 13 C 0.031 3.969 14 C -0.525 4.525 15 H 0.057 0.943 16 C 0.063 3.937 17 N -0.892 5.892 18 Si 0.891 3.109 19 H -0.279 1.279 20 H -0.286 1.286 21 H -0.273 1.273 22 H 0.024 0.976 23 H 0.065 0.935 24 H 0.065 0.935 25 H 0.036 0.964 26 H 0.081 0.919 27 H 0.073 0.927 28 H 0.061 0.939 29 H 0.106 0.894 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.054 0.946 35 H 0.078 0.922 36 H 0.037 0.963 37 H 0.026 0.974 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.285 13.279 -6.147 17.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.271 5.271 3 C -0.074 4.074 4 C -0.123 4.123 5 C -0.167 4.167 6 C -0.220 4.220 7 C -0.219 4.219 8 C -0.067 4.067 9 C -0.011 4.011 10 H 0.117 0.883 11 C -0.059 4.059 12 N -0.159 5.159 13 C -0.008 4.008 14 C -0.563 4.563 15 H 0.075 0.925 16 C -0.139 4.139 17 N -0.531 5.531 18 Si 0.719 3.281 19 H -0.205 1.205 20 H -0.212 1.212 21 H -0.198 1.198 22 H 0.043 0.957 23 H 0.084 0.916 24 H 0.084 0.916 25 H 0.054 0.946 26 H 0.100 0.900 27 H 0.092 0.908 28 H 0.080 0.920 29 H 0.124 0.876 30 H 0.110 0.890 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.111 0.889 34 H 0.072 0.928 35 H 0.097 0.903 36 H 0.055 0.945 37 H 0.044 0.956 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.951 11.934 -7.785 17.380 hybrid contribution 0.764 0.492 1.093 1.422 sum -9.187 12.427 -6.692 16.840 Atomic orbital electron populations 1.22382 0.87806 1.01807 1.00322 1.61998 1.07484 1.13607 1.44014 1.22186 1.01036 0.87784 0.96401 1.21175 1.00241 0.92442 0.98425 1.22329 1.00811 0.92448 1.01138 1.23033 0.96989 0.99882 1.02112 1.22954 1.03088 1.03722 0.92174 1.22241 0.94991 0.98147 0.91294 1.19235 0.95150 0.96455 0.90253 0.88341 1.28840 0.91150 0.92815 0.93056 1.80970 1.10493 1.11382 1.13034 1.19175 0.95916 0.95905 0.89788 1.21143 0.92867 1.38636 1.03685 0.92506 1.24946 0.98590 0.95257 0.95143 1.69937 1.35995 1.39565 1.07605 0.86600 0.85430 0.77717 0.78397 1.20490 1.21151 1.19824 0.95736 0.91632 0.91591 0.94618 0.90030 0.90806 0.92013 0.87595 0.89039 0.89091 0.88991 0.88941 0.92790 0.90314 0.94505 0.95582 0.92819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.28 60.07 0.56 0.84 16 2 N -0.55 -7.52 4.39 -242.92 -1.07 -8.59 16 3 C 0.05 0.65 4.77 -3.82 -0.02 0.64 16 4 C -0.09 -0.93 5.42 -26.73 -0.14 -1.07 16 5 C -0.15 -1.46 5.73 -90.62 -0.52 -1.98 16 6 C -0.18 -1.58 10.18 -26.69 -0.27 -1.85 16 7 C -0.18 -1.62 10.25 -26.69 -0.27 -1.90 16 8 C 0.06 0.94 4.35 -3.83 -0.02 0.93 16 9 C 0.01 0.21 2.22 -93.41 -0.21 0.00 16 10 H 0.10 1.75 6.48 -51.93 -0.34 1.41 16 11 C 0.26 5.53 13.64 -20.76 -0.28 5.24 16 12 N -0.48 -11.18 18.54 42.15 0.78 -10.39 16 13 C 0.03 0.72 4.42 -27.89 -0.12 0.60 16 14 C -0.53 -14.08 8.60 -34.44 -0.30 -14.38 16 15 H 0.06 1.52 7.59 -52.49 -0.40 1.12 16 16 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 17 N -0.89 -25.64 13.28 55.43 0.74 -24.90 16 18 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 22 H 0.02 0.25 8.13 -51.93 -0.42 -0.17 16 23 H 0.06 0.68 6.54 -51.93 -0.34 0.34 16 24 H 0.07 0.75 7.97 -51.93 -0.41 0.33 16 25 H 0.04 0.41 8.11 -51.93 -0.42 -0.01 16 26 H 0.08 1.05 6.35 -51.93 -0.33 0.73 16 27 H 0.07 0.90 8.14 -51.92 -0.42 0.48 16 28 H 0.06 0.63 6.32 -51.93 -0.33 0.30 16 29 H 0.11 1.05 8.08 -51.93 -0.42 0.63 16 30 H 0.09 0.75 8.03 -51.93 -0.42 0.33 16 31 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.05 0.76 8.05 -51.93 -0.42 0.34 16 35 H 0.08 1.21 7.88 -51.93 -0.41 0.80 16 36 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 318.08 15.07 4.79 4.79 Total: -1.00 -29.84 318.08 -7.80 -37.63 By element: Atomic # 1 Polarization: 2.71 SS G_CDS: -6.32 Total: -3.62 kcal Atomic # 6 Polarization: -9.60 SS G_CDS: -1.70 Total: -11.29 kcal Atomic # 7 Polarization: -44.33 SS G_CDS: 0.45 Total: -43.88 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.84 -7.80 -37.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135248771.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.024 kcal (2) G-P(sol) polarization free energy of solvation -29.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.630 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds