Wall clock time and date at job start Sun Mar 29 2020 22:04:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46901 * 110.99935 * 2 1 4 4 C 1.53001 * 109.47480 * 293.96155 * 3 2 1 5 5 C 1.52994 * 109.47210 * 180.02562 * 4 3 2 6 6 C 1.53001 * 117.49623 * 243.74537 * 5 4 3 7 7 C 1.53002 * 117.49876 * 175.08633 * 5 4 3 8 8 C 1.46896 * 111.00480 * 123.95920 * 2 1 3 9 9 C 1.52994 * 109.47323 * 164.07313 * 8 2 1 10 10 H 1.08994 * 109.47629 * 56.13052 * 9 8 2 11 11 C 1.47206 * 109.47028 * 296.13407 * 9 8 2 12 12 N 3.64834 * 127.80616 * 204.41742 * 2 1 3 13 13 C 1.53004 * 109.47471 * 176.13412 * 9 8 2 14 14 C 1.50692 * 109.47445 * 184.99713 * 13 9 8 15 15 H 1.07997 * 119.99942 * 0.02562 * 14 13 9 16 16 C 1.37876 * 120.00158 * 179.97438 * 14 13 9 17 17 N 1.31508 * 119.99818 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00081 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47293 * 90.00274 * 18 16 14 20 20 H 1.48507 * 109.47137 * 210.00256 * 18 16 14 21 21 H 1.48497 * 109.47383 * 330.00234 * 18 16 14 22 22 H 1.09007 * 109.46837 * 301.54822 * 1 2 3 23 23 H 1.08992 * 109.47607 * 61.54914 * 1 2 3 24 24 H 1.08997 * 109.47136 * 181.55248 * 1 2 3 25 25 H 1.09003 * 109.46636 * 53.95806 * 3 2 1 26 26 H 1.08999 * 109.46785 * 173.95608 * 3 2 1 27 27 H 1.09007 * 109.46809 * 299.99979 * 4 3 2 28 28 H 1.09000 * 109.46978 * 59.99436 * 4 3 2 29 29 H 1.09004 * 115.55179 * 29.41419 * 5 4 3 30 30 H 1.08998 * 117.50310 * 359.97438 * 6 5 4 31 31 H 1.08999 * 117.49724 * 145.02055 * 6 5 4 32 32 H 1.09005 * 117.49562 * 214.97384 * 7 5 4 33 33 H 1.08997 * 117.49848 * 359.97438 * 7 5 4 34 34 H 1.08996 * 109.46936 * 284.07508 * 8 2 1 35 35 H 1.09003 * 109.46910 * 44.07254 * 8 2 1 36 36 H 1.08997 * 109.46740 * 305.00370 * 13 9 8 37 37 H 1.09002 * 109.46760 * 64.99484 * 13 9 8 38 38 H 0.97007 * 120.00502 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6313 2.0576 -1.3182 5 6 2.1802 3.4857 -1.3184 6 6 1.1677 4.6316 -1.3726 7 6 2.0199 4.3039 -2.6012 8 6 1.9956 -0.7660 1.1374 9 6 3.4733 -1.0826 0.8989 10 1 4.0207 -0.1555 0.7290 11 6 3.6044 -1.9530 -0.2810 12 7 3.7054 -2.6247 -1.1916 13 6 4.0465 -1.7960 2.1250 14 6 5.5285 -1.9982 1.9414 15 1 6.0132 -1.6521 1.0405 16 6 6.2659 -2.6241 2.9240 17 7 5.6757 -3.0451 4.0213 18 14 8.1030 -2.8741 2.6967 19 1 8.8334 -1.7020 3.2426 20 1 8.5284 -4.1015 3.4164 21 1 8.4079 -3.0176 1.2505 22 1 -0.3633 0.5377 0.8758 23 1 -0.3634 0.4895 -0.9035 24 1 -0.3633 -1.0273 0.0278 25 1 1.5611 1.9273 0.8310 26 1 3.0797 1.3444 0.1082 27 1 2.0656 1.5017 -2.1492 28 1 0.5471 2.0845 -1.4263 29 1 3.0857 3.6415 -0.7319 30 1 0.1107 4.3680 -1.4085 31 1 1.4074 5.5413 -0.8220 32 1 2.8199 4.9983 -2.8585 33 1 1.5239 3.8247 -3.4452 34 1 1.8925 -0.1788 2.0499 35 1 1.4365 -1.6962 1.2390 36 1 3.8698 -1.1899 3.0136 37 1 3.5595 -2.7640 2.2428 38 1 6.1945 -3.4851 4.7129 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135248771.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:44 Heat of formation + Delta-G solvation = 17.998785 kcal Electronic energy + Delta-G solvation = -16323.121174 eV Core-core repulsion = 13779.136454 eV Total energy + Delta-G solvation = -2543.984721 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.63935 -38.28508 -37.02643 -35.47747 -33.59013 -31.26029 -28.97515 -26.64304 -24.94645 -23.54726 -23.18315 -21.97558 -21.21438 -18.51599 -18.20375 -16.77715 -16.67656 -16.32293 -15.87801 -15.57109 -14.80415 -14.74635 -14.60287 -14.23451 -13.87761 -13.72887 -13.22922 -13.05503 -12.93721 -12.64310 -12.59519 -12.47306 -12.37844 -12.29346 -12.12778 -12.08381 -11.62597 -11.37159 -11.12630 -10.97615 -10.68246 -10.54351 -9.19612 -8.19098 -6.27345 1.40403 1.42490 1.51869 2.07600 2.15322 2.41984 2.91106 3.03544 3.16453 3.37331 3.83568 4.06543 4.10641 4.16691 4.26010 4.30994 4.50195 4.57765 4.68105 4.77037 4.78141 4.81955 4.82852 4.84426 4.99603 5.06567 5.13451 5.17210 5.27967 5.32874 5.46737 5.48722 5.61935 5.79515 6.09475 6.22917 6.24376 6.83514 6.94322 7.41280 8.91901 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.026563 B = 0.005065 C = 0.004745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.833447 B = 5526.360536 C = 5899.561081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.563 5.563 3 C 0.054 3.946 4 C -0.076 4.076 5 C -0.162 4.162 6 C -0.174 4.174 7 C -0.184 4.184 8 C 0.072 3.928 9 C 0.022 3.978 10 H 0.113 0.887 11 C 0.268 3.732 12 N -0.516 5.516 13 C 0.038 3.962 14 C -0.539 4.539 15 H 0.052 0.948 16 C 0.013 3.987 17 N -0.923 5.923 18 Si 0.948 3.052 19 H -0.266 1.266 20 H -0.284 1.284 21 H -0.277 1.277 22 H 0.037 0.963 23 H 0.077 0.923 24 H 0.063 0.937 25 H 0.047 0.953 26 H 0.070 0.930 27 H 0.055 0.945 28 H 0.070 0.930 29 H 0.103 0.897 30 H 0.097 0.903 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.093 0.907 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.035 0.965 37 H 0.002 0.998 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.688 14.691 -6.348 19.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.287 5.287 3 C -0.073 4.073 4 C -0.114 4.114 5 C -0.181 4.181 6 C -0.211 4.211 7 C -0.221 4.221 8 C -0.057 4.057 9 C 0.000 4.000 10 H 0.131 0.869 11 C -0.048 4.048 12 N -0.193 5.193 13 C -0.001 4.001 14 C -0.577 4.577 15 H 0.071 0.929 16 C -0.186 4.186 17 N -0.563 5.563 18 Si 0.774 3.226 19 H -0.191 1.191 20 H -0.209 1.209 21 H -0.202 1.202 22 H 0.056 0.944 23 H 0.095 0.905 24 H 0.082 0.918 25 H 0.065 0.935 26 H 0.089 0.911 27 H 0.074 0.926 28 H 0.089 0.911 29 H 0.121 0.879 30 H 0.116 0.884 31 H 0.118 0.882 32 H 0.116 0.884 33 H 0.112 0.888 34 H 0.088 0.912 35 H 0.095 0.905 36 H 0.053 0.947 37 H 0.020 0.980 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.362 13.362 -7.994 18.703 hybrid contribution 0.865 0.067 1.138 1.431 sum -9.497 13.429 -6.855 17.819 Atomic orbital electron populations 1.22417 0.86102 1.02134 1.01524 1.61942 1.09094 1.14422 1.43222 1.22210 1.00400 0.87200 0.97522 1.21064 1.00638 0.92727 0.96961 1.22293 1.01371 0.92231 1.02174 1.23101 0.97020 0.99450 1.01533 1.23025 1.03447 1.03525 0.92084 1.22061 0.92268 0.98782 0.92619 1.19192 0.97882 0.95739 0.87218 0.86927 1.29331 0.90065 0.92338 0.93068 1.80965 1.11803 1.12325 1.14232 1.18995 0.94254 0.95132 0.91726 1.21536 0.94735 1.38152 1.03312 0.92936 1.25695 1.02614 0.95258 0.95048 1.70029 1.37476 1.40479 1.08344 0.85696 0.80889 0.78031 0.77976 1.19089 1.20935 1.20157 0.94412 0.90456 0.91782 0.93494 0.91116 0.92589 0.91136 0.87890 0.88416 0.88225 0.88372 0.88842 0.91232 0.90545 0.94669 0.97997 0.92687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 9.28 127.69 1.18 1.71 16 2 N -0.56 -14.51 4.39 -922.47 -4.05 -18.56 16 3 C 0.05 1.22 4.77 86.30 0.41 1.63 16 4 C -0.08 -1.54 5.42 30.59 0.17 -1.37 16 5 C -0.16 -2.91 5.73 -10.79 -0.06 -2.98 16 6 C -0.17 -2.60 10.18 30.62 0.31 -2.29 16 7 C -0.18 -2.95 10.25 30.62 0.31 -2.64 16 8 C 0.07 2.09 4.35 86.30 0.38 2.46 16 9 C 0.02 0.80 2.22 -12.60 -0.03 0.77 16 10 H 0.11 3.88 6.48 -2.39 -0.02 3.86 16 11 C 0.27 11.40 13.64 89.44 1.22 12.62 16 12 N -0.52 -23.90 18.54 20.01 0.37 -23.53 16 13 C 0.04 1.76 4.42 29.85 0.13 1.89 16 14 C -0.54 -28.88 8.60 25.60 0.22 -28.66 16 15 H 0.05 2.80 7.59 -2.91 -0.02 2.78 16 16 C 0.01 0.71 5.46 84.66 0.46 1.17 16 17 N -0.92 -53.19 13.28 21.45 0.28 -52.90 16 18 Si 0.95 43.65 29.54 68.60 2.03 45.68 16 19 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 20 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 21 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 22 H 0.04 0.68 8.13 -2.38 -0.02 0.66 16 23 H 0.08 1.40 6.54 -2.39 -0.02 1.39 16 24 H 0.06 1.33 7.97 -2.39 -0.02 1.32 16 25 H 0.05 0.96 8.11 -2.39 -0.02 0.94 16 26 H 0.07 1.74 6.35 -2.39 -0.02 1.72 16 27 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 28 H 0.07 1.28 6.32 -2.39 -0.02 1.26 16 29 H 0.10 1.90 8.08 -2.38 -0.02 1.88 16 30 H 0.10 1.34 8.03 -2.39 -0.02 1.32 16 31 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.10 1.44 8.14 -2.38 -0.02 1.42 16 33 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.07 1.82 8.05 -2.39 -0.02 1.80 16 35 H 0.08 2.26 7.88 -2.39 -0.02 2.24 16 36 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 38 H 0.26 14.43 8.31 -92.70 -0.77 13.66 16 Total: -1.00 -62.46 318.08 4.36 -58.10 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: 1.02 Total: 6.89 kcal Atomic # 6 Polarization: -20.37 SS G_CDS: 4.71 Total: -15.67 kcal Atomic # 7 Polarization: -91.60 SS G_CDS: -3.39 Total: -95.00 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -62.46 4.36 -58.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135248771.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.100 kcal (2) G-P(sol) polarization free energy of solvation -62.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds