Wall clock time and date at job start Sun Mar 29 2020 22:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46901 * 110.99941 * 2 1 4 4 C 1.53000 * 109.47270 * 293.95327 * 3 2 1 5 5 C 1.53003 * 109.47118 * 180.02562 * 4 3 2 6 6 C 1.53000 * 117.49832 * 243.74619 * 5 4 3 7 7 C 1.52993 * 117.49674 * 175.08404 * 5 4 3 8 8 C 1.46904 * 110.99941 * 123.95183 * 2 1 3 9 9 C 1.52996 * 109.46858 * 66.04420 * 8 2 1 10 10 H 1.09000 * 109.47753 * 305.00128 * 9 8 2 11 11 C 1.47204 * 109.47042 * 64.99895 * 9 8 2 12 12 N 3.66491 * 112.02768 * 199.40976 * 2 1 3 13 13 C 1.52996 * 109.47153 * 184.99851 * 9 8 2 14 14 C 1.50702 * 109.47159 * 175.00123 * 13 9 8 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 9 16 16 C 1.37884 * 119.99942 * 179.72211 * 14 13 9 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 13 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 13 19 19 H 1.48501 * 109.47188 * 90.00793 * 18 16 14 20 20 H 1.48501 * 109.47085 * 210.00372 * 18 16 14 21 21 H 1.48498 * 109.47634 * 330.00608 * 18 16 14 22 22 H 1.09002 * 109.47590 * 296.04657 * 1 2 3 23 23 H 1.09003 * 109.47109 * 56.04577 * 1 2 3 24 24 H 1.08997 * 109.47828 * 176.04404 * 1 2 3 25 25 H 1.09009 * 109.47392 * 53.95440 * 3 2 1 26 26 H 1.09004 * 109.46810 * 173.95274 * 3 2 1 27 27 H 1.09003 * 109.46722 * 299.99996 * 4 3 2 28 28 H 1.08996 * 109.47039 * 59.99602 * 4 3 2 29 29 H 1.09000 * 115.54690 * 29.41935 * 5 4 3 30 30 H 1.08996 * 117.49433 * 0.02562 * 6 5 4 31 31 H 1.08996 * 117.49765 * 145.02230 * 6 5 4 32 32 H 1.09001 * 117.50319 * 214.98115 * 7 5 4 33 33 H 1.09005 * 117.50036 * 0.02562 * 7 5 4 34 34 H 1.08997 * 109.46933 * 306.04580 * 8 2 1 35 35 H 1.08996 * 109.47325 * 186.04722 * 8 2 1 36 36 H 1.09004 * 109.47066 * 55.00326 * 13 9 8 37 37 H 1.08994 * 109.47405 * 295.00156 * 13 9 8 38 38 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0575 -1.3183 5 6 2.1803 3.4857 -1.3185 6 6 1.1679 4.6315 -1.3729 7 6 2.0202 4.3037 -2.6014 8 6 1.9954 -0.7660 1.1376 9 6 1.6313 -2.2425 0.9704 10 1 0.5531 -2.3389 0.8433 11 6 2.3154 -2.7854 -0.2146 12 7 2.8435 -3.2043 -1.1290 13 6 2.0698 -3.0198 2.2131 14 6 1.6029 -4.4484 2.1028 15 1 1.0492 -4.7700 1.2331 16 6 1.8880 -5.3466 3.1093 17 7 2.5627 -4.9552 4.1682 18 14 1.3159 -7.1192 2.9690 19 1 2.3634 -7.9254 2.2921 20 1 1.0686 -7.6685 4.3263 21 1 0.0609 -7.1732 2.1770 22 1 -0.3634 0.4512 0.9233 23 1 -0.3633 0.5740 -0.8524 24 1 -0.3634 -1.0251 -0.0709 25 1 1.5610 1.9274 0.8310 26 1 3.0797 1.3444 0.1083 27 1 2.0658 1.5015 -2.1491 28 1 0.5472 2.0844 -1.4265 29 1 3.0857 3.6414 -0.7319 30 1 0.1109 4.3679 -1.4080 31 1 1.4075 5.5413 -0.8224 32 1 2.8201 4.9980 -2.8588 33 1 1.5235 3.8246 -3.4452 34 1 1.5611 -0.3872 2.0628 35 1 3.0796 -0.6611 1.1757 36 1 1.6329 -2.5623 3.1008 37 1 3.1568 -2.9978 2.2907 38 1 2.7629 -5.5870 4.8765 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135248795.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:46 Heat of formation + Delta-G solvation = 34.929301 kcal Electronic energy + Delta-G solvation = -16163.213436 eV Core-core repulsion = 13619.962877 eV Total energy + Delta-G solvation = -2543.250558 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.56322 -37.36393 -35.58604 -33.61249 -31.96580 -29.99964 -27.32479 -25.90179 -23.34042 -22.57241 -21.67554 -20.97206 -20.45648 -16.70239 -16.51078 -15.90299 -15.53479 -15.06137 -14.53810 -14.32967 -13.92782 -13.47779 -13.09294 -12.74752 -12.30443 -12.12826 -11.91093 -11.74683 -11.61079 -11.53715 -11.33576 -11.17322 -11.02164 -11.00251 -10.68232 -10.55176 -10.35009 -10.10159 -10.00296 -9.50683 -9.20273 -8.44745 -8.16040 -6.08722 -4.11707 3.30638 3.37133 3.40412 3.59958 3.76411 3.86932 4.00617 4.42153 4.59970 4.73210 4.75900 4.94641 5.04800 5.23351 5.29465 5.41095 5.42122 5.42653 5.56597 5.59292 5.69556 5.72553 5.80348 5.89890 5.91515 6.02806 6.07699 6.12710 6.25436 6.42066 6.52599 7.20593 7.21980 7.44050 7.54642 7.86710 8.24550 8.62293 8.93093 9.53658 11.02228 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.052568 B = 0.004133 C = 0.004041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.519153 B = 6773.379644 C = 6927.322969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.547 5.547 3 C 0.059 3.941 4 C -0.086 4.086 5 C -0.149 4.149 6 C -0.183 4.183 7 C -0.182 4.182 8 C 0.063 3.937 9 C 0.010 3.990 10 H 0.100 0.900 11 C 0.257 3.743 12 N -0.481 5.481 13 C 0.031 3.969 14 C -0.526 4.526 15 H 0.057 0.943 16 C 0.062 3.938 17 N -0.892 5.892 18 Si 0.892 3.108 19 H -0.280 1.280 20 H -0.285 1.285 21 H -0.273 1.273 22 H 0.027 0.973 23 H 0.064 0.936 24 H 0.073 0.927 25 H 0.034 0.966 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.064 0.936 29 H 0.104 0.896 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.053 0.947 35 H 0.078 0.922 36 H 0.037 0.963 37 H 0.026 0.974 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.904 17.277 -6.529 18.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.271 5.271 3 C -0.069 4.069 4 C -0.124 4.124 5 C -0.168 4.168 6 C -0.220 4.220 7 C -0.220 4.220 8 C -0.066 4.066 9 C -0.012 4.012 10 H 0.118 0.882 11 C -0.060 4.060 12 N -0.158 5.158 13 C -0.008 4.008 14 C -0.564 4.564 15 H 0.075 0.925 16 C -0.140 4.140 17 N -0.531 5.531 18 Si 0.719 3.281 19 H -0.206 1.206 20 H -0.211 1.211 21 H -0.197 1.197 22 H 0.046 0.954 23 H 0.083 0.917 24 H 0.092 0.908 25 H 0.052 0.948 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.082 0.918 29 H 0.122 0.878 30 H 0.111 0.889 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.111 0.889 34 H 0.071 0.929 35 H 0.097 0.903 36 H 0.055 0.945 37 H 0.044 0.956 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.884 16.350 -8.169 18.503 hybrid contribution -0.725 -0.465 1.140 1.429 sum -3.609 15.884 -7.029 17.741 Atomic orbital electron populations 1.22492 0.87637 1.02681 1.00199 1.62014 1.07979 1.13111 1.43986 1.22068 1.00187 0.88165 0.96457 1.21197 1.00515 0.92324 0.98369 1.22314 1.00740 0.92557 1.01151 1.23041 0.97110 0.99790 1.02054 1.22961 1.03097 1.03676 0.92216 1.22243 1.00706 0.92324 0.91328 1.19253 0.99222 0.92582 0.90179 0.88211 1.28854 0.92700 0.91389 0.93031 1.80974 1.10677 1.11010 1.13123 1.19173 0.97708 0.94385 0.89484 1.21150 1.35919 0.94449 1.04863 0.92505 1.24956 0.94945 0.98840 0.95246 1.69942 1.39475 1.35194 1.08455 0.86590 0.79256 0.84909 0.77314 1.20632 1.21119 1.19736 0.95427 0.91686 0.90799 0.94758 0.90850 0.90784 0.91759 0.87830 0.88907 0.89100 0.89014 0.88852 0.92879 0.90334 0.94488 0.95578 0.92813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.13 60.06 0.55 0.77 16 2 N -0.55 -7.52 4.46 -242.92 -1.08 -8.60 16 3 C 0.06 0.68 4.92 -3.82 -0.02 0.66 16 4 C -0.09 -0.89 5.43 -26.73 -0.15 -1.04 16 5 C -0.15 -1.35 5.73 -90.62 -0.52 -1.86 16 6 C -0.18 -1.48 10.18 -26.69 -0.27 -1.75 16 7 C -0.18 -1.50 10.25 -26.70 -0.27 -1.78 16 8 C 0.06 0.96 4.32 -3.82 -0.02 0.94 16 9 C 0.01 0.18 2.13 -93.41 -0.20 -0.02 16 10 H 0.10 1.77 6.34 -51.93 -0.33 1.44 16 11 C 0.26 5.49 13.67 -20.76 -0.28 5.21 16 12 N -0.48 -11.13 18.54 42.15 0.78 -10.35 16 13 C 0.03 0.73 4.42 -27.88 -0.12 0.60 16 14 C -0.53 -14.10 8.60 -34.44 -0.30 -14.40 16 15 H 0.06 1.52 7.59 -52.49 -0.40 1.12 16 16 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 17 N -0.89 -25.64 13.29 55.43 0.74 -24.91 16 18 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 22 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 23 H 0.06 0.70 6.30 -51.93 -0.33 0.37 16 24 H 0.07 0.94 6.37 -51.93 -0.33 0.61 16 25 H 0.03 0.38 8.12 -51.92 -0.42 -0.05 16 26 H 0.07 0.85 7.93 -51.93 -0.41 0.44 16 27 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.06 0.64 6.21 -51.93 -0.32 0.32 16 29 H 0.10 0.91 8.08 -51.93 -0.42 0.49 16 30 H 0.09 0.73 8.03 -51.93 -0.42 0.31 16 31 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 35 H 0.08 1.21 7.93 -51.93 -0.41 0.80 16 36 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 317.71 15.07 4.79 4.79 Total: -1.00 -29.82 317.71 -7.80 -37.62 By element: Atomic # 1 Polarization: 2.41 SS G_CDS: -6.31 Total: -3.89 kcal Atomic # 6 Polarization: -9.35 SS G_CDS: -1.70 Total: -11.05 kcal Atomic # 7 Polarization: -44.29 SS G_CDS: 0.43 Total: -43.86 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.82 -7.80 -37.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135248795.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.549 kcal (2) G-P(sol) polarization free energy of solvation -29.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds