Wall clock time and date at job start Sun Mar 29 2020 22:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46901 * 110.99941 * 2 1 4 4 C 1.53000 * 109.47270 * 293.95327 * 3 2 1 5 5 C 1.53003 * 109.47118 * 180.02562 * 4 3 2 6 6 C 1.53000 * 117.49832 * 243.74619 * 5 4 3 7 7 C 1.52993 * 117.49674 * 175.08404 * 5 4 3 8 8 C 1.46904 * 110.99941 * 123.95183 * 2 1 3 9 9 C 1.52996 * 109.46858 * 66.04420 * 8 2 1 10 10 H 1.09000 * 109.47753 * 305.00128 * 9 8 2 11 11 C 1.47204 * 109.47042 * 64.99895 * 9 8 2 12 12 N 3.66491 * 112.02768 * 199.40976 * 2 1 3 13 13 C 1.52996 * 109.47153 * 184.99851 * 9 8 2 14 14 C 1.50702 * 109.47159 * 175.00123 * 13 9 8 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 9 16 16 C 1.37884 * 119.99942 * 179.72211 * 14 13 9 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 13 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 13 19 19 H 1.48501 * 109.47188 * 90.00793 * 18 16 14 20 20 H 1.48501 * 109.47085 * 210.00372 * 18 16 14 21 21 H 1.48498 * 109.47634 * 330.00608 * 18 16 14 22 22 H 1.09002 * 109.47590 * 296.04657 * 1 2 3 23 23 H 1.09003 * 109.47109 * 56.04577 * 1 2 3 24 24 H 1.08997 * 109.47828 * 176.04404 * 1 2 3 25 25 H 1.09009 * 109.47392 * 53.95440 * 3 2 1 26 26 H 1.09004 * 109.46810 * 173.95274 * 3 2 1 27 27 H 1.09003 * 109.46722 * 299.99996 * 4 3 2 28 28 H 1.08996 * 109.47039 * 59.99602 * 4 3 2 29 29 H 1.09000 * 115.54690 * 29.41935 * 5 4 3 30 30 H 1.08996 * 117.49433 * 0.02562 * 6 5 4 31 31 H 1.08996 * 117.49765 * 145.02230 * 6 5 4 32 32 H 1.09001 * 117.50319 * 214.98115 * 7 5 4 33 33 H 1.09005 * 117.50036 * 0.02562 * 7 5 4 34 34 H 1.08997 * 109.46933 * 306.04580 * 8 2 1 35 35 H 1.08996 * 109.47325 * 186.04722 * 8 2 1 36 36 H 1.09004 * 109.47066 * 55.00326 * 13 9 8 37 37 H 1.08994 * 109.47405 * 295.00156 * 13 9 8 38 38 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0575 -1.3183 5 6 2.1803 3.4857 -1.3185 6 6 1.1679 4.6315 -1.3729 7 6 2.0202 4.3037 -2.6014 8 6 1.9954 -0.7660 1.1376 9 6 1.6313 -2.2425 0.9704 10 1 0.5531 -2.3389 0.8433 11 6 2.3154 -2.7854 -0.2146 12 7 2.8435 -3.2043 -1.1290 13 6 2.0698 -3.0198 2.2131 14 6 1.6029 -4.4484 2.1028 15 1 1.0492 -4.7700 1.2331 16 6 1.8880 -5.3466 3.1093 17 7 2.5627 -4.9552 4.1682 18 14 1.3159 -7.1192 2.9690 19 1 2.3634 -7.9254 2.2921 20 1 1.0686 -7.6685 4.3263 21 1 0.0609 -7.1732 2.1770 22 1 -0.3634 0.4512 0.9233 23 1 -0.3633 0.5740 -0.8524 24 1 -0.3634 -1.0251 -0.0709 25 1 1.5610 1.9274 0.8310 26 1 3.0797 1.3444 0.1083 27 1 2.0658 1.5015 -2.1491 28 1 0.5472 2.0844 -1.4265 29 1 3.0857 3.6414 -0.7319 30 1 0.1109 4.3679 -1.4080 31 1 1.4075 5.5413 -0.8224 32 1 2.8201 4.9980 -2.8588 33 1 1.5235 3.8246 -3.4452 34 1 1.5611 -0.3872 2.0628 35 1 3.0796 -0.6611 1.1757 36 1 1.6329 -2.5623 3.1008 37 1 3.1568 -2.9978 2.2907 38 1 2.7629 -5.5870 4.8765 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135248795.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:46 Heat of formation + Delta-G solvation = 18.495743 kcal Electronic energy + Delta-G solvation = -16163.926048 eV Core-core repulsion = 13619.962877 eV Total energy + Delta-G solvation = -2543.963171 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.62663 -38.35905 -37.02346 -35.48384 -33.66374 -31.10613 -28.75166 -27.25377 -24.73077 -23.42819 -23.18912 -22.00514 -21.21051 -18.50659 -18.22700 -16.85020 -16.67439 -16.28220 -16.00957 -15.58562 -14.95291 -14.61759 -14.43373 -14.24010 -14.06658 -13.70521 -13.17700 -13.01009 -12.97689 -12.72186 -12.55061 -12.48013 -12.38682 -12.28717 -12.17774 -11.85351 -11.74760 -11.38815 -11.22029 -10.91795 -10.70729 -10.55422 -9.19649 -8.19386 -6.27678 1.40286 1.42548 1.51725 2.06557 2.14178 2.41705 2.89502 3.02424 3.16078 3.35276 3.85822 4.05090 4.09843 4.12366 4.23697 4.33735 4.46264 4.58472 4.67175 4.73383 4.74352 4.82089 4.82800 4.86708 5.00198 5.07520 5.11595 5.19271 5.25936 5.31142 5.46284 5.47417 5.61754 5.79184 6.09246 6.22015 6.24049 6.83118 6.93404 7.40855 8.91596 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.052568 B = 0.004133 C = 0.004041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.519153 B = 6773.379644 C = 6927.322969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.562 5.562 3 C 0.061 3.939 4 C -0.078 4.078 5 C -0.159 4.159 6 C -0.177 4.177 7 C -0.184 4.184 8 C 0.072 3.928 9 C 0.020 3.980 10 H 0.117 0.883 11 C 0.267 3.733 12 N -0.515 5.515 13 C 0.038 3.962 14 C -0.539 4.539 15 H 0.054 0.946 16 C 0.011 3.989 17 N -0.923 5.923 18 Si 0.948 3.052 19 H -0.284 1.284 20 H -0.278 1.278 21 H -0.264 1.264 22 H 0.039 0.961 23 H 0.079 0.921 24 H 0.065 0.935 25 H 0.045 0.955 26 H 0.069 0.931 27 H 0.057 0.943 28 H 0.069 0.931 29 H 0.105 0.895 30 H 0.096 0.904 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.092 0.908 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.035 0.965 37 H 0.001 0.999 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.958 18.241 -6.765 20.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.286 5.286 3 C -0.066 4.066 4 C -0.116 4.116 5 C -0.178 4.178 6 C -0.214 4.214 7 C -0.221 4.221 8 C -0.057 4.057 9 C -0.002 4.002 10 H 0.134 0.866 11 C -0.049 4.049 12 N -0.192 5.192 13 C -0.001 4.001 14 C -0.577 4.577 15 H 0.072 0.928 16 C -0.188 4.188 17 N -0.563 5.563 18 Si 0.774 3.226 19 H -0.210 1.210 20 H -0.203 1.203 21 H -0.188 1.188 22 H 0.057 0.943 23 H 0.097 0.903 24 H 0.083 0.917 25 H 0.063 0.937 26 H 0.088 0.912 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.123 0.877 30 H 0.114 0.886 31 H 0.119 0.881 32 H 0.118 0.882 33 H 0.111 0.889 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.053 0.947 37 H 0.019 0.981 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.949 17.326 -8.415 19.662 hybrid contribution -0.394 -0.732 1.196 1.456 sum -4.343 16.594 -7.219 18.610 Atomic orbital electron populations 1.22536 0.86546 1.02548 1.01472 1.61964 1.09114 1.14366 1.43158 1.22091 0.99977 0.87053 0.97493 1.21092 1.00690 0.92811 0.97004 1.22276 1.01317 0.92080 1.02124 1.23110 0.97047 0.99540 1.01675 1.23035 1.03446 1.03529 0.92071 1.22060 1.00716 0.90134 0.92746 1.19211 0.99706 0.94207 0.87028 0.86587 1.29340 0.91993 0.90527 0.93050 1.80970 1.11803 1.12114 1.14334 1.18993 0.95948 0.93618 0.91530 1.21555 1.35464 0.96236 1.04492 0.92807 1.25719 0.95246 1.02650 0.95150 1.70034 1.40651 1.36480 1.09163 0.85691 0.78898 0.80391 0.77601 1.21024 1.20308 1.18784 0.94250 0.90279 0.91661 0.93676 0.91240 0.92426 0.91279 0.87681 0.88587 0.88150 0.88196 0.88922 0.91346 0.90749 0.94669 0.98069 0.92693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 9.13 127.69 1.17 1.53 16 2 N -0.56 -14.50 4.46 -922.45 -4.12 -18.62 16 3 C 0.06 1.30 4.92 86.30 0.42 1.73 16 4 C -0.08 -1.49 5.43 30.60 0.17 -1.33 16 5 C -0.16 -2.61 5.73 -10.79 -0.06 -2.67 16 6 C -0.18 -2.47 10.18 30.62 0.31 -2.16 16 7 C -0.18 -2.71 10.25 30.62 0.31 -2.40 16 8 C 0.07 2.11 4.32 86.30 0.37 2.49 16 9 C 0.02 0.74 2.13 -12.60 -0.03 0.72 16 10 H 0.12 3.93 6.34 -2.39 -0.02 3.92 16 11 C 0.27 11.29 13.67 89.44 1.22 12.52 16 12 N -0.51 -23.75 18.54 20.01 0.37 -23.38 16 13 C 0.04 1.77 4.42 29.85 0.13 1.90 16 14 C -0.54 -28.82 8.60 25.60 0.22 -28.60 16 15 H 0.05 2.85 7.59 -2.91 -0.02 2.83 16 16 C 0.01 0.62 5.46 84.66 0.46 1.08 16 17 N -0.92 -53.23 13.29 21.45 0.28 -52.95 16 18 Si 0.95 43.60 29.54 68.60 2.03 45.62 16 19 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 20 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 21 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 22 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 23 H 0.08 1.51 6.30 -2.39 -0.02 1.49 16 24 H 0.06 1.54 6.37 -2.39 -0.02 1.52 16 25 H 0.05 0.88 8.12 -2.38 -0.02 0.86 16 26 H 0.07 1.52 7.93 -2.38 -0.02 1.51 16 27 H 0.06 1.28 8.14 -2.39 -0.02 1.27 16 28 H 0.07 1.24 6.21 -2.39 -0.01 1.22 16 29 H 0.11 1.68 8.08 -2.39 -0.02 1.66 16 30 H 0.10 1.28 8.03 -2.39 -0.02 1.26 16 31 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 34 H 0.07 1.80 8.12 -2.39 -0.02 1.78 16 35 H 0.07 2.23 7.93 -2.39 -0.02 2.21 16 36 H 0.04 1.65 8.14 -2.38 -0.02 1.63 16 37 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 38 H 0.26 14.44 8.31 -92.70 -0.77 13.67 16 Total: -1.00 -62.36 317.71 4.29 -58.08 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: 1.02 Total: 6.43 kcal Atomic # 6 Polarization: -19.89 SS G_CDS: 4.70 Total: -15.18 kcal Atomic # 7 Polarization: -91.48 SS G_CDS: -3.46 Total: -94.95 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.62 kcal Total: -62.36 4.29 -58.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135248795.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.574 kcal (2) G-P(sol) polarization free energy of solvation -62.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds