Wall clock time and date at job start Sun Mar 29 2020 21:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.35502 * 126.97789 * 2 1 4 4 N 1.30515 * 107.30251 * 180.02562 * 3 2 1 5 5 N 1.28596 * 109.67892 * 359.73507 * 4 3 2 6 6 C 1.30519 * 109.66996 * 0.44764 * 5 4 3 7 7 C 1.50697 * 126.34932 * 179.82563 * 6 5 4 8 8 H 1.08999 * 110.46619 * 195.64666 * 7 6 5 9 9 C 1.54387 * 110.41245 * 73.22915 * 7 6 5 10 10 C 1.54259 * 105.06271 * 217.37422 * 9 7 6 11 11 C 1.54377 * 105.06022 * 359.97438 * 10 9 7 12 12 N 1.48559 * 110.41194 * 318.06176 * 7 6 5 13 13 C 1.46904 * 111.00066 * 277.82089 * 12 7 6 14 14 C 1.50695 * 109.47518 * 169.99995 * 13 12 7 15 15 H 1.08007 * 119.99861 * 359.97438 * 14 13 12 16 16 C 1.37872 * 120.00094 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99874 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00033 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47159 * 60.00143 * 18 16 14 20 20 H 1.48504 * 109.47135 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47172 * 299.99861 * 18 16 14 22 22 H 1.08998 * 109.46682 * 269.99360 * 1 2 3 23 23 H 1.09002 * 109.47185 * 29.99474 * 1 2 3 24 24 H 1.08995 * 109.46818 * 149.99502 * 1 2 3 25 25 H 1.07997 * 126.34306 * 0.02562 * 3 2 1 26 26 H 1.09000 * 110.32138 * 336.26966 * 9 7 6 27 27 H 1.09003 * 110.32046 * 98.37258 * 9 7 6 28 28 H 1.08991 * 110.32316 * 118.89554 * 10 9 7 29 29 H 1.09006 * 110.31751 * 241.10803 * 10 9 7 30 30 H 1.09004 * 110.41320 * 142.63193 * 11 10 9 31 31 H 1.08995 * 110.41567 * 265.08053 * 11 10 9 32 32 H 1.09003 * 109.46545 * 290.00107 * 13 12 7 33 33 H 1.09001 * 109.46768 * 49.99082 * 13 12 7 34 34 H 0.97003 * 119.99923 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2801 1.0825 0.0000 4 7 3.5090 0.6430 -0.0006 5 7 3.5091 -0.6429 0.0047 6 6 2.2801 -1.0823 -0.0008 7 6 1.8477 -2.5259 -0.0011 8 1 0.7977 -2.6092 -0.2815 9 6 2.0864 -3.1599 1.3862 10 6 2.5485 -4.6023 1.0937 11 6 2.5495 -4.7188 -0.4456 12 7 2.6957 -3.3206 -0.9265 13 6 2.2281 -3.1893 -2.3130 14 6 3.2427 -3.7993 -3.2453 15 1 4.1451 -4.2401 -2.8478 16 6 3.0192 -3.7947 -4.6058 17 7 1.9207 -3.2575 -5.0899 18 14 4.2773 -4.5502 -5.7616 19 1 4.4523 -5.9875 -5.4317 20 1 3.8044 -4.4175 -7.1631 21 1 5.5756 -3.8456 -5.6090 22 1 -0.3632 -0.0001 1.0277 23 1 -0.3634 0.8900 -0.5138 24 1 -0.3633 -0.8899 -0.5139 25 1 1.9701 2.1170 0.0004 26 1 2.8631 -2.6150 1.9228 27 1 1.1618 -3.1665 1.9635 28 1 3.5519 -4.7654 1.4868 29 1 1.8502 -5.3186 1.5268 30 1 3.3909 -5.3255 -0.7804 31 1 1.6093 -5.1452 -0.7953 32 1 1.2748 -3.7057 -2.4252 33 1 2.1003 -2.1341 -2.5548 34 1 1.7633 -3.2546 -6.0470 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156698879.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:00 Heat of formation + Delta-G solvation = 89.047495 kcal Electronic energy + Delta-G solvation = -17055.604825 eV Core-core repulsion = 14411.160664 eV Total energy + Delta-G solvation = -2644.444161 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.68719 -38.25793 -34.73475 -33.14138 -31.04396 -30.97173 -27.83349 -27.29541 -26.36629 -22.92828 -22.07901 -21.63959 -20.22215 -19.42006 -17.03776 -16.25222 -15.93869 -15.40580 -15.17356 -14.67505 -14.16190 -13.55032 -13.31812 -13.09428 -12.87295 -12.46846 -11.93123 -11.75899 -11.49321 -11.00782 -10.98808 -10.73761 -10.66914 -10.43102 -10.20616 -9.89673 -9.87404 -9.80452 -9.27708 -8.72011 -8.41432 -7.48120 -6.01998 -4.02130 2.16767 2.75149 3.36769 3.37706 3.39908 3.44879 4.43697 4.56969 4.65977 4.78505 4.92934 5.00448 5.08353 5.24889 5.32498 5.39117 5.44561 5.50674 5.84098 5.90071 6.06232 6.13028 6.22228 6.33042 6.52852 6.58601 6.62734 7.05886 7.17023 7.18400 7.74798 7.95572 8.12306 8.47473 9.04882 9.23690 9.61852 11.09377 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.022909 B = 0.008205 C = 0.007018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.957766 B = 3411.794017 C = 3988.508888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.482 5.482 3 C 0.132 3.868 4 N -0.303 5.303 5 N -0.262 5.262 6 C 0.207 3.793 7 C 0.142 3.858 8 H 0.057 0.943 9 C -0.109 4.109 10 C -0.123 4.123 11 C 0.046 3.954 12 N -0.484 5.484 13 C 0.187 3.813 14 C -0.500 4.500 15 H 0.065 0.935 16 C 0.054 3.946 17 N -0.903 5.903 18 Si 0.900 3.100 19 H -0.276 1.276 20 H -0.288 1.288 21 H -0.275 1.275 22 H 0.079 0.921 23 H 0.090 0.910 24 H 0.090 0.910 25 H 0.213 0.787 26 H 0.074 0.926 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.084 0.916 31 H 0.039 0.961 32 H -0.006 1.006 33 H 0.024 0.976 34 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.992 3.528 12.339 14.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.174 5.174 3 C -0.155 4.155 4 N -0.142 5.142 5 N -0.101 5.101 6 C -0.061 4.061 7 C 0.030 3.970 8 H 0.075 0.925 9 C -0.149 4.149 10 C -0.161 4.161 11 C -0.082 4.082 12 N -0.209 5.209 13 C 0.062 3.938 14 C -0.539 4.539 15 H 0.083 0.917 16 C -0.147 4.147 17 N -0.543 5.543 18 Si 0.728 3.272 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.200 1.200 22 H 0.097 0.903 23 H 0.108 0.892 24 H 0.109 0.891 25 H 0.229 0.771 26 H 0.093 0.907 27 H 0.082 0.918 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.102 0.898 31 H 0.057 0.943 32 H 0.011 0.989 33 H 0.042 0.958 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.019 3.764 12.144 13.669 hybrid contribution -1.879 -0.312 -1.025 2.163 sum -6.897 3.452 11.119 13.532 Atomic orbital electron populations 1.22051 0.76041 1.05322 1.03545 1.46199 1.08905 1.06975 1.55314 1.26267 0.87720 0.94542 1.06955 1.74278 1.17946 1.04183 1.17838 1.74333 1.16863 1.01759 1.17164 1.24621 0.86997 0.91487 1.03007 1.20813 0.95594 0.85007 0.95604 0.92519 1.22275 1.01086 0.96630 0.94862 1.22329 1.01472 0.95309 0.97003 1.22946 1.00980 0.91697 0.92548 1.65354 1.47708 1.04261 1.03574 1.19872 0.94597 0.97000 0.82369 1.21050 1.05248 1.37033 0.90526 0.91709 1.24980 0.95700 0.95713 0.98266 1.69944 1.25662 1.45537 1.13140 0.86522 0.81691 0.79643 0.79374 1.20197 1.21416 1.20046 0.90288 0.89173 0.89133 0.77098 0.90707 0.91828 0.91042 0.91878 0.89772 0.94310 0.98862 0.95832 0.92960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.72 11.01 59.85 0.66 1.38 16 2 N -0.48 -7.32 3.15 -122.69 -0.39 -7.70 16 3 C 0.13 2.02 12.74 -89.94 -1.15 0.87 16 4 N -0.30 -6.11 12.21 29.69 0.36 -5.74 16 5 N -0.26 -5.82 12.21 32.79 0.40 -5.42 16 6 C 0.21 3.95 6.42 -154.99 -0.99 2.96 16 7 C 0.14 2.58 2.63 -67.22 -0.18 2.40 16 8 H 0.06 0.97 6.84 -51.93 -0.36 0.61 16 9 C -0.11 -1.62 6.54 -25.35 -0.17 -1.79 16 10 C -0.12 -1.80 7.00 -25.35 -0.18 -1.97 16 11 C 0.05 0.87 6.12 -2.17 -0.01 0.86 16 12 N -0.48 -10.78 4.99 -224.91 -1.12 -11.90 16 13 C 0.19 4.97 4.54 -4.98 -0.02 4.95 16 14 C -0.50 -14.52 8.97 -34.44 -0.31 -14.83 16 15 H 0.06 1.88 7.81 -52.48 -0.41 1.47 16 16 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 17 N -0.90 -27.22 13.29 55.43 0.74 -26.49 16 18 Si 0.90 22.34 29.54 -169.99 -5.02 17.32 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 22 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 24 H 0.09 0.93 7.09 -51.93 -0.37 0.56 16 25 H 0.21 2.08 8.06 -52.49 -0.42 1.66 16 26 H 0.07 1.17 7.85 -51.93 -0.41 0.77 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 31 H 0.04 0.73 7.75 -51.93 -0.40 0.32 16 32 H -0.01 -0.17 7.77 -51.93 -0.40 -0.58 16 33 H 0.02 0.69 7.78 -51.93 -0.40 0.29 16 34 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 286.25 15.07 4.31 4.31 Total: -1.00 -35.59 286.25 -8.01 -43.60 By element: Atomic # 1 Polarization: 0.56 SS G_CDS: -4.85 Total: -4.28 kcal Atomic # 6 Polarization: -1.25 SS G_CDS: -2.44 Total: -3.69 kcal Atomic # 7 Polarization: -57.25 SS G_CDS: -0.01 Total: -57.26 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -35.59 -8.01 -43.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156698879.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.644 kcal (2) G-P(sol) polarization free energy of solvation -35.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds