Wall clock time and date at job start Sun Mar 29 2020 21:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.35502 * 126.97789 * 2 1 4 4 N 1.30515 * 107.30251 * 180.02562 * 3 2 1 5 5 N 1.28596 * 109.67892 * 359.73507 * 4 3 2 6 6 C 1.30519 * 109.66996 * 0.44764 * 5 4 3 7 7 C 1.50697 * 126.34932 * 179.82563 * 6 5 4 8 8 H 1.08999 * 110.46619 * 195.64666 * 7 6 5 9 9 C 1.54387 * 110.41245 * 73.22915 * 7 6 5 10 10 C 1.54259 * 105.06271 * 217.37422 * 9 7 6 11 11 C 1.54377 * 105.06022 * 359.97438 * 10 9 7 12 12 N 1.48559 * 110.41194 * 318.06176 * 7 6 5 13 13 C 1.46904 * 111.00066 * 277.82089 * 12 7 6 14 14 C 1.50695 * 109.47518 * 169.99995 * 13 12 7 15 15 H 1.08007 * 119.99861 * 359.97438 * 14 13 12 16 16 C 1.37872 * 120.00094 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99874 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00033 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47159 * 60.00143 * 18 16 14 20 20 H 1.48504 * 109.47135 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47172 * 299.99861 * 18 16 14 22 22 H 1.08998 * 109.46682 * 269.99360 * 1 2 3 23 23 H 1.09002 * 109.47185 * 29.99474 * 1 2 3 24 24 H 1.08995 * 109.46818 * 149.99502 * 1 2 3 25 25 H 1.07997 * 126.34306 * 0.02562 * 3 2 1 26 26 H 1.09000 * 110.32138 * 336.26966 * 9 7 6 27 27 H 1.09003 * 110.32046 * 98.37258 * 9 7 6 28 28 H 1.08991 * 110.32316 * 118.89554 * 10 9 7 29 29 H 1.09006 * 110.31751 * 241.10803 * 10 9 7 30 30 H 1.09004 * 110.41320 * 142.63193 * 11 10 9 31 31 H 1.08995 * 110.41567 * 265.08053 * 11 10 9 32 32 H 1.09003 * 109.46545 * 290.00107 * 13 12 7 33 33 H 1.09001 * 109.46768 * 49.99082 * 13 12 7 34 34 H 0.97003 * 119.99923 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2801 1.0825 0.0000 4 7 3.5090 0.6430 -0.0006 5 7 3.5091 -0.6429 0.0047 6 6 2.2801 -1.0823 -0.0008 7 6 1.8477 -2.5259 -0.0011 8 1 0.7977 -2.6092 -0.2815 9 6 2.0864 -3.1599 1.3862 10 6 2.5485 -4.6023 1.0937 11 6 2.5495 -4.7188 -0.4456 12 7 2.6957 -3.3206 -0.9265 13 6 2.2281 -3.1893 -2.3130 14 6 3.2427 -3.7993 -3.2453 15 1 4.1451 -4.2401 -2.8478 16 6 3.0192 -3.7947 -4.6058 17 7 1.9207 -3.2575 -5.0899 18 14 4.2773 -4.5502 -5.7616 19 1 4.4523 -5.9875 -5.4317 20 1 3.8044 -4.4175 -7.1631 21 1 5.5756 -3.8456 -5.6090 22 1 -0.3632 -0.0001 1.0277 23 1 -0.3634 0.8900 -0.5138 24 1 -0.3633 -0.8899 -0.5139 25 1 1.9701 2.1170 0.0004 26 1 2.8631 -2.6150 1.9228 27 1 1.1618 -3.1665 1.9635 28 1 3.5519 -4.7654 1.4868 29 1 1.8502 -5.3186 1.5268 30 1 3.3909 -5.3255 -0.7804 31 1 1.6093 -5.1452 -0.7953 32 1 1.2748 -3.7057 -2.4252 33 1 2.1003 -2.1341 -2.5548 34 1 1.7633 -3.2546 -6.0470 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156698879.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:00 Heat of formation + Delta-G solvation = 64.227227 kcal Electronic energy + Delta-G solvation = -17056.681112 eV Core-core repulsion = 14411.160664 eV Total energy + Delta-G solvation = -2645.520448 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.99636 -39.76740 -35.91808 -35.22853 -32.75030 -32.39768 -29.14583 -28.37614 -28.31996 -24.72151 -23.56529 -22.96876 -21.66494 -20.83869 -18.60298 -18.02404 -17.19892 -17.01221 -16.55977 -16.21474 -15.76520 -15.01583 -14.62117 -14.49902 -14.21733 -13.88797 -13.51839 -13.35705 -12.98672 -12.72717 -12.55480 -12.43107 -12.33440 -12.03030 -11.87920 -11.44312 -11.40044 -11.20675 -11.01397 -10.64606 -10.12600 -9.21527 -8.25587 -6.34597 0.92035 1.36236 1.40791 1.48142 1.65842 1.99376 2.37090 3.06892 3.22761 3.36788 3.72018 3.84201 3.87122 3.99990 4.06753 4.27503 4.38560 4.60174 4.63240 4.64230 4.78206 4.87920 4.92652 4.99546 5.03530 5.16599 5.21152 5.26328 5.39460 5.60551 5.94428 6.05344 6.22687 6.45484 6.79372 7.34680 7.88087 8.85375 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.022909 B = 0.008205 C = 0.007018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.957766 B = 3411.794017 C = 3988.508888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.479 5.479 3 C 0.155 3.845 4 N -0.357 5.357 5 N -0.318 5.318 6 C 0.190 3.810 7 C 0.139 3.861 8 H 0.068 0.932 9 C -0.099 4.099 10 C -0.110 4.110 11 C 0.042 3.958 12 N -0.509 5.509 13 C 0.212 3.788 14 C -0.523 4.523 15 H 0.056 0.944 16 C 0.003 3.997 17 N -0.933 5.933 18 Si 0.967 3.033 19 H -0.262 1.262 20 H -0.278 1.278 21 H -0.276 1.276 22 H 0.113 0.887 23 H 0.119 0.881 24 H 0.081 0.919 25 H 0.265 0.735 26 H 0.063 0.937 27 H 0.104 0.896 28 H 0.074 0.926 29 H 0.100 0.900 30 H 0.067 0.933 31 H 0.037 0.963 32 H -0.025 1.025 33 H -0.016 1.016 34 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.178 3.540 13.449 16.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.170 5.170 3 C -0.133 4.133 4 N -0.196 5.196 5 N -0.157 5.157 6 C -0.079 4.079 7 C 0.027 3.973 8 H 0.086 0.914 9 C -0.138 4.138 10 C -0.148 4.148 11 C -0.086 4.086 12 N -0.234 5.234 13 C 0.085 3.915 14 C -0.561 4.561 15 H 0.075 0.925 16 C -0.195 4.195 17 N -0.573 5.573 18 Si 0.792 3.208 19 H -0.187 1.187 20 H -0.203 1.203 21 H -0.202 1.202 22 H 0.131 0.869 23 H 0.137 0.863 24 H 0.099 0.901 25 H 0.281 0.719 26 H 0.082 0.918 27 H 0.122 0.878 28 H 0.093 0.907 29 H 0.119 0.881 30 H 0.086 0.914 31 H 0.055 0.945 32 H -0.007 1.007 33 H 0.002 0.998 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.225 3.767 13.279 15.141 hybrid contribution -1.590 -0.227 -1.352 2.100 sum -7.815 3.540 11.926 14.692 Atomic orbital electron populations 1.22484 0.72727 1.06345 1.06106 1.46482 1.10812 1.05744 1.53980 1.27222 0.86464 0.96399 1.03228 1.74133 1.20928 1.03747 1.20754 1.74182 1.19178 1.03106 1.19267 1.24719 0.87173 0.92639 1.03402 1.20982 0.95303 0.84540 0.96442 0.91404 1.22281 1.02742 0.95849 0.92933 1.22298 1.02913 0.96203 0.93372 1.22998 1.00161 0.89635 0.95801 1.65179 1.49227 1.06898 1.02114 1.19375 0.93213 0.93749 0.85121 1.21370 1.05577 1.37519 0.91671 0.92545 1.25878 0.97717 0.95986 0.99910 1.70053 1.27295 1.46313 1.13675 0.85470 0.78715 0.79325 0.77340 1.18654 1.20337 1.20163 0.86906 0.86271 0.90070 0.71899 0.91794 0.87751 0.90698 0.88140 0.91404 0.94467 1.00699 0.99792 0.92642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.06 11.01 127.77 1.41 2.47 16 2 N -0.48 -13.83 3.15 -542.08 -1.71 -15.54 16 3 C 0.15 4.48 12.74 180.11 2.30 6.77 16 4 N -0.36 -14.53 12.21 -59.99 -0.73 -15.26 16 5 N -0.32 -14.52 12.21 -50.16 -0.61 -15.13 16 6 C 0.19 7.30 6.42 137.98 0.89 8.19 16 7 C 0.14 5.01 2.63 44.32 0.12 5.12 16 8 H 0.07 2.27 6.84 -2.39 -0.02 2.25 16 9 C -0.10 -2.72 6.54 31.49 0.21 -2.52 16 10 C -0.11 -2.97 7.00 31.49 0.22 -2.75 16 11 C 0.04 1.57 6.12 86.44 0.53 2.10 16 12 N -0.51 -23.28 4.99 -865.49 -4.32 -27.60 16 13 C 0.21 11.75 4.54 85.55 0.39 12.13 16 14 C -0.52 -31.38 8.97 25.60 0.23 -31.15 16 15 H 0.06 3.39 7.81 -2.91 -0.02 3.37 16 16 C 0.00 0.18 5.46 84.65 0.46 0.64 16 17 N -0.93 -57.33 13.29 21.45 0.28 -57.04 16 18 Si 0.97 46.31 29.54 68.60 2.03 48.33 16 19 H -0.26 -11.86 7.11 99.48 0.71 -11.16 16 20 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 21 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 22 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 23 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 24 H 0.08 1.53 7.09 -2.39 -0.02 1.51 16 25 H 0.27 4.20 8.06 -2.91 -0.02 4.18 16 26 H 0.06 1.92 7.85 -2.39 -0.02 1.90 16 27 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 28 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.10 2.01 8.14 -2.38 -0.02 1.99 16 30 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 31 H 0.04 1.39 7.75 -2.39 -0.02 1.37 16 32 H -0.02 -1.41 7.77 -2.39 -0.02 -1.43 16 33 H -0.02 -1.00 7.78 -2.39 -0.02 -1.01 16 34 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -82.01 286.25 2.76 -79.25 By element: Atomic # 1 Polarization: 0.90 SS G_CDS: 1.08 Total: 1.98 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: 6.74 Total: 1.01 kcal Atomic # 7 Polarization: -123.48 SS G_CDS: -7.09 Total: -130.57 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.33 kcal Total: -82.01 2.76 -79.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156698879.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.474 kcal (2) G-P(sol) polarization free energy of solvation -82.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds