Wall clock time and date at job start Sun Mar 29 2020 21:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.35498 * 126.97833 * 2 1 4 4 N 1.30523 * 107.30386 * 180.02562 * 3 2 1 5 5 N 1.28595 * 109.67526 * 359.72853 * 4 3 2 6 6 C 1.30518 * 109.66964 * 0.44950 * 5 4 3 7 7 C 1.50706 * 126.34483 * 179.82668 * 6 5 4 8 8 H 1.08994 * 109.90527 * 165.03809 * 7 6 5 9 9 C 1.54000 * 109.91193 * 286.14010 * 7 6 5 10 10 C 1.54601 * 105.13484 * 120.58034 * 9 7 6 11 11 C 1.54933 * 102.92263 * 21.95464 * 10 9 7 12 12 N 1.47901 * 109.91631 * 43.72879 * 7 6 5 13 13 C 1.46897 * 110.99758 * 94.80805 * 12 7 6 14 14 C 1.50700 * 109.47089 * 169.99770 * 13 12 7 15 15 H 1.07993 * 120.00022 * 0.02562 * 14 13 12 16 16 C 1.37883 * 119.99869 * 179.97438 * 14 13 12 17 17 N 1.31505 * 120.00115 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 119.99801 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47244 * 89.99867 * 18 16 14 20 20 H 1.48498 * 109.46724 * 210.00248 * 18 16 14 21 21 H 1.48500 * 109.47094 * 329.99812 * 18 16 14 22 22 H 1.08999 * 109.47402 * 269.99730 * 1 2 3 23 23 H 1.09002 * 109.47634 * 30.00240 * 1 2 3 24 24 H 1.08999 * 109.47146 * 150.00126 * 1 2 3 25 25 H 1.07999 * 126.34383 * 0.02562 * 3 2 1 26 26 H 1.09001 * 110.30649 * 239.49266 * 9 7 6 27 27 H 1.08996 * 110.30794 * 1.66316 * 9 7 6 28 28 H 1.08998 * 110.72336 * 140.31424 * 10 9 7 29 29 H 1.09007 * 110.72022 * 263.59456 * 10 9 7 30 30 H 1.09002 * 110.66679 * 81.02308 * 11 10 9 31 31 H 1.09000 * 110.66404 * 203.98216 * 11 10 9 32 32 H 1.09004 * 109.46994 * 289.99967 * 13 12 7 33 33 H 1.08997 * 109.47557 * 49.99585 * 13 12 7 34 34 H 0.97003 * 120.00428 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2800 1.0824 0.0000 4 7 3.5090 0.6430 -0.0006 5 7 3.5091 -0.6429 0.0048 6 6 2.2801 -1.0823 -0.0006 7 6 1.8477 -2.5260 -0.0007 8 1 0.7915 -2.5971 0.2588 9 6 2.0896 -3.1458 -1.3896 10 6 3.0586 -4.3247 -1.1423 11 6 2.8455 -4.6392 0.3597 12 7 2.6610 -3.2956 0.9655 13 6 1.9828 -3.3927 2.2649 14 6 2.7127 -4.3786 3.1402 15 1 3.5927 -4.8824 2.7685 16 6 2.2577 -4.6366 4.4159 17 7 1.1864 -4.0228 4.8686 18 14 3.1629 -5.8583 5.5012 19 1 4.2052 -5.1472 6.2843 20 1 2.2003 -6.5036 6.4296 21 1 3.8029 -6.8951 4.6522 22 1 -0.3634 0.0000 1.0276 23 1 -0.3634 0.8899 -0.5139 24 1 -0.3633 -0.8900 -0.5138 25 1 1.9701 2.1170 0.0004 26 1 1.1518 -3.5087 -1.8104 27 1 2.5462 -2.4141 -2.0561 28 1 2.7878 -5.1823 -1.7582 29 1 4.0890 -4.0231 -1.3309 30 1 1.9546 -5.2510 0.5020 31 1 3.7218 -5.1352 0.7770 32 1 1.9772 -2.4144 2.7457 33 1 0.9571 -3.7296 2.1152 34 1 0.8664 -4.2041 5.7663 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156699014.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:02 Heat of formation + Delta-G solvation = 88.606244 kcal Electronic energy + Delta-G solvation = -17030.236350 eV Core-core repulsion = 14385.773055 eV Total energy + Delta-G solvation = -2644.463295 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.70928 -38.27127 -34.75155 -33.19110 -31.03189 -30.92963 -27.87322 -27.32494 -26.29021 -23.00123 -22.06717 -21.61147 -20.34246 -19.34115 -17.05671 -16.23455 -15.97491 -15.39527 -15.12073 -14.68506 -14.16540 -13.58513 -13.29656 -13.01872 -12.87965 -12.55009 -12.01297 -11.73349 -11.31017 -11.09693 -11.03537 -10.73624 -10.63617 -10.42780 -10.26542 -9.91076 -9.87774 -9.85407 -9.21163 -8.72775 -8.49619 -7.41082 -6.07452 -4.08475 2.15238 2.73995 3.31586 3.34799 3.37460 3.40899 4.39860 4.58705 4.61455 4.77600 4.94055 5.02652 5.10296 5.28535 5.28792 5.37743 5.43921 5.56703 5.88887 5.91406 6.10100 6.20540 6.24464 6.31326 6.53545 6.66872 6.72520 7.07608 7.17402 7.26405 7.69505 7.93897 8.12524 8.43747 8.98616 9.21044 9.56196 11.04148 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.026176 B = 0.007529 C = 0.006708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.436369 B = 3717.844151 C = 4173.069581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.482 5.482 3 C 0.131 3.869 4 N -0.305 5.305 5 N -0.266 5.266 6 C 0.207 3.793 7 C 0.147 3.853 8 H 0.060 0.940 9 C -0.116 4.116 10 C -0.125 4.125 11 C 0.057 3.943 12 N -0.496 5.496 13 C 0.188 3.812 14 C -0.511 4.511 15 H 0.066 0.934 16 C 0.056 3.944 17 N -0.899 5.899 18 Si 0.899 3.101 19 H -0.279 1.279 20 H -0.287 1.287 21 H -0.272 1.272 22 H 0.083 0.917 23 H 0.088 0.912 24 H 0.088 0.912 25 H 0.212 0.788 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.042 0.958 31 H 0.084 0.916 32 H 0.027 0.973 33 H -0.008 1.008 34 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.020 5.070 -12.088 14.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.174 5.174 3 C -0.156 4.156 4 N -0.144 5.144 5 N -0.106 5.106 6 C -0.061 4.061 7 C 0.034 3.966 8 H 0.078 0.922 9 C -0.155 4.155 10 C -0.163 4.163 11 C -0.071 4.071 12 N -0.220 5.220 13 C 0.063 3.937 14 C -0.549 4.549 15 H 0.084 0.916 16 C -0.145 4.145 17 N -0.538 5.538 18 Si 0.727 3.273 19 H -0.206 1.206 20 H -0.213 1.213 21 H -0.197 1.197 22 H 0.101 0.899 23 H 0.107 0.893 24 H 0.107 0.893 25 H 0.229 0.771 26 H 0.085 0.915 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.061 0.939 31 H 0.102 0.898 32 H 0.045 0.955 33 H 0.010 0.990 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.137 5.352 -11.800 13.332 hybrid contribution -2.039 -0.659 0.838 2.301 sum -5.176 4.693 -10.962 13.000 Atomic orbital electron populations 1.22056 0.75971 1.04608 1.04364 1.46214 1.08946 1.06983 1.55234 1.26260 0.87730 0.94560 1.07073 1.74271 1.17976 1.04233 1.17954 1.74304 1.17007 1.01751 1.17496 1.24874 0.86947 0.91712 1.02553 1.20591 0.95962 0.85164 0.94839 0.92194 1.22374 0.99784 0.98293 0.95029 1.22552 0.99849 0.96613 0.97289 1.22962 1.01329 0.91269 0.91491 1.64549 1.43752 1.11229 1.02513 1.19898 0.91959 0.97582 0.84299 1.21179 1.12055 1.23348 0.98327 0.91571 1.24987 0.95101 0.96519 0.97888 1.69949 1.23373 1.42840 1.17684 0.86469 0.79402 0.81123 0.80290 1.20551 1.21312 1.19715 0.89857 0.89284 0.89321 0.77132 0.91464 0.91335 0.91622 0.90748 0.93932 0.89788 0.95459 0.99012 0.92920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.71 10.85 59.84 0.65 1.36 16 2 N -0.48 -7.17 3.15 -122.69 -0.39 -7.55 16 3 C 0.13 1.94 12.74 -89.94 -1.15 0.79 16 4 N -0.30 -5.95 12.21 29.69 0.36 -5.59 16 5 N -0.27 -5.74 12.21 32.80 0.40 -5.34 16 6 C 0.21 3.89 6.67 -154.99 -1.03 2.85 16 7 C 0.15 2.68 2.77 -67.79 -0.19 2.49 16 8 H 0.06 1.05 6.69 -51.93 -0.35 0.70 16 9 C -0.12 -1.72 6.56 -25.37 -0.17 -1.89 16 10 C -0.12 -1.92 7.06 -24.87 -0.18 -2.09 16 11 C 0.06 1.11 5.54 -1.90 -0.01 1.10 16 12 N -0.50 -11.04 5.00 -225.38 -1.13 -12.17 16 13 C 0.19 4.95 4.79 -4.98 -0.02 4.92 16 14 C -0.51 -14.43 8.56 -34.44 -0.29 -14.73 16 15 H 0.07 1.84 6.52 -52.49 -0.34 1.50 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 17 N -0.90 -26.68 13.29 55.43 0.74 -25.94 16 18 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 22 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 23 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.09 0.77 7.46 -51.93 -0.39 0.38 16 25 H 0.21 1.99 8.06 -52.49 -0.42 1.57 16 26 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 27 H 0.07 1.02 7.68 -51.93 -0.40 0.62 16 28 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.07 1.17 8.14 -51.92 -0.42 0.75 16 30 H 0.04 0.83 8.02 -51.93 -0.42 0.41 16 31 H 0.08 1.70 7.15 -51.93 -0.37 1.32 16 32 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 33 H -0.01 -0.21 7.82 -51.93 -0.41 -0.62 16 34 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 284.27 15.07 4.28 4.28 Total: -1.00 -34.73 284.27 -8.00 -42.73 By element: Atomic # 1 Polarization: 1.24 SS G_CDS: -4.76 Total: -3.53 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: -2.49 Total: -3.68 kcal Atomic # 7 Polarization: -56.57 SS G_CDS: -0.01 Total: -56.58 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -34.73 -8.00 -42.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156699014.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.332 kcal (2) G-P(sol) polarization free energy of solvation -34.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds