Wall clock time and date at job start Sun Mar 29 2020 21:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46509 * 109.47072 * 2 1 4 4 C 1.46499 * 119.99802 * 270.00378 * 3 2 1 5 5 C 1.50698 * 109.46658 * 269.99613 * 4 3 2 6 6 H 1.07999 * 120.00281 * 359.97438 * 5 4 3 7 7 C 1.37883 * 119.99992 * 180.02562 * 5 4 3 8 8 N 1.31511 * 119.99653 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00049 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47296 * 89.99955 * 9 7 5 11 11 H 1.48503 * 109.46685 * 209.99752 * 9 7 5 12 12 H 1.48495 * 109.47007 * 329.99364 * 9 7 5 13 13 C 1.38425 * 119.99827 * 89.99944 * 3 2 1 14 14 N 1.32727 * 119.65622 * 180.02562 * 13 3 2 15 15 N 1.28735 * 121.24214 * 179.97438 * 14 13 3 16 16 C 1.32209 * 120.48194 * 359.73374 * 15 14 13 17 17 C 1.50704 * 120.35212 * 180.25759 * 16 15 14 18 18 C 1.38696 * 119.29096 * 0.51894 * 16 15 14 19 19 C 1.50706 * 120.58058 * 179.76692 * 18 16 15 20 20 N 1.32414 * 118.83892 * 359.48639 * 18 16 15 21 21 H 1.09001 * 109.46868 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.47274 * 299.99786 * 1 2 3 23 23 H 1.09007 * 109.47237 * 59.99933 * 1 2 3 24 24 H 1.09000 * 109.47255 * 240.00680 * 2 1 3 25 25 H 1.08998 * 109.47484 * 120.00088 * 2 1 3 26 26 H 1.08997 * 109.47377 * 29.99675 * 4 3 2 27 27 H 1.09005 * 109.47093 * 150.00042 * 4 3 2 28 28 H 0.97004 * 119.99898 * 180.02562 * 8 7 5 29 29 H 1.08997 * 109.47048 * 270.26263 * 17 16 15 30 30 H 1.08998 * 109.46864 * 30.26541 * 17 16 15 31 31 H 1.09002 * 109.46894 * 150.26364 * 17 16 15 32 32 H 1.09001 * 109.46953 * 269.71501 * 19 18 16 33 33 H 1.09000 * 109.47318 * 29.71099 * 19 18 16 34 34 H 1.09000 * 109.47161 * 149.71729 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7037 6 1 4.3428 1.2310 -1.0957 7 6 4.1493 2.3906 -2.8775 8 7 3.3492 3.1266 -3.6176 9 14 5.9133 2.0965 -3.4170 10 1 5.9760 0.8760 -4.2606 11 1 6.3928 3.2641 -4.1994 12 1 6.7734 1.9158 -2.2201 13 6 2.2490 2.0338 1.1988 14 7 2.6909 3.2853 1.1909 15 7 2.9152 3.9212 2.2876 16 6 2.7037 3.3391 3.4556 17 6 2.9617 4.0881 4.7376 18 6 2.2471 2.0298 3.4885 19 6 2.0013 1.3363 4.8038 20 7 2.0255 1.4017 2.3440 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3634 0.5139 -0.8900 24 1 1.8933 -0.5137 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 1.5816 1.6878 -2.0284 27 1 2.0954 3.1412 -1.1384 28 1 3.6753 3.5170 -4.4435 29 1 3.9942 3.9304 5.0491 30 1 2.7890 5.1524 4.5776 31 1 2.2884 3.7234 5.5133 32 1 2.9110 0.8266 5.1213 33 1 1.7165 2.0728 5.5552 34 1 1.1989 0.6080 4.6861 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000158842102.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:40 Heat of formation + Delta-G solvation = 73.268797 kcal Electronic energy + Delta-G solvation = -16751.879435 eV Core-core repulsion = 14106.751058 eV Total energy + Delta-G solvation = -2645.128377 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.10151 -36.97913 -34.80046 -33.44752 -32.65668 -30.41470 -29.13431 -27.76144 -26.33982 -23.70166 -23.06421 -22.59314 -20.34319 -18.27674 -16.75726 -16.24840 -15.45113 -14.78744 -14.67300 -14.06259 -13.77999 -13.46766 -13.09446 -13.01580 -12.91929 -12.50418 -12.06129 -11.89329 -11.74372 -11.42206 -11.23652 -10.98075 -10.79406 -10.72991 -10.62962 -10.46911 -10.11076 -9.93159 -9.29328 -8.53947 -8.41701 -7.19209 -6.05037 -4.11162 1.24231 1.60315 3.29715 3.35143 3.36822 3.44322 4.19772 4.24178 4.42971 4.65424 4.85481 5.04942 5.28173 5.37827 5.40883 5.51304 5.54851 5.69915 5.71581 5.79278 5.84370 5.90756 6.15225 6.18685 6.28498 6.45225 6.58421 6.99131 7.30052 7.39740 7.83598 7.99247 8.16946 8.19162 8.90924 9.37878 9.53759 11.01696 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.024896 B = 0.007629 C = 0.006464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.388985 B = 3669.423024 C = 4330.916636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.124 3.876 3 N -0.549 5.549 4 C 0.253 3.747 5 C -0.527 4.527 6 H 0.056 0.944 7 C 0.065 3.935 8 N -0.892 5.892 9 Si 0.898 3.102 10 H -0.280 1.280 11 H -0.284 1.284 12 H -0.275 1.275 13 C 0.505 3.495 14 N -0.308 5.308 15 N -0.153 5.153 16 C -0.083 4.083 17 C -0.079 4.079 18 C 0.186 3.814 19 C -0.104 4.104 20 N -0.532 5.532 21 H 0.060 0.940 22 H 0.050 0.950 23 H 0.056 0.944 24 H 0.082 0.918 25 H 0.074 0.926 26 H 0.038 0.962 27 H 0.051 0.949 28 H 0.264 0.736 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.178 -4.129 14.619 15.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.000 4.000 3 N -0.260 5.260 4 C 0.134 3.866 5 C -0.566 4.566 6 H 0.074 0.926 7 C -0.138 4.138 8 N -0.531 5.531 9 Si 0.726 3.274 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.200 1.200 13 C 0.148 3.852 14 N -0.168 5.168 15 N -0.006 5.006 16 C -0.235 4.235 17 C -0.138 4.138 18 C 0.027 3.973 19 C -0.161 4.161 20 N -0.262 5.262 21 H 0.079 0.921 22 H 0.070 0.930 23 H 0.075 0.925 24 H 0.100 0.900 25 H 0.093 0.907 26 H 0.056 0.944 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.104 0.896 33 H 0.103 0.897 34 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.082 -3.729 13.172 14.286 hybrid contribution 0.889 -0.567 0.248 1.083 sum -3.194 -4.297 13.420 14.449 Atomic orbital electron populations 1.22136 0.96715 1.01317 1.01965 1.21356 0.93479 0.82311 1.02838 1.47030 1.63468 1.12728 1.02822 1.19483 0.96587 0.93749 0.76787 1.21383 0.96651 1.32150 1.06430 0.92609 1.24894 0.97842 0.94771 0.96272 1.69923 1.35687 1.33204 1.14294 0.86491 0.84628 0.77707 0.78573 1.20631 1.20967 1.20006 1.20963 0.88869 0.88353 0.86995 1.73968 1.18024 1.06681 1.18104 1.73479 1.04899 1.27598 0.94586 1.22854 1.07579 0.95474 0.97615 1.20404 1.01969 1.00108 0.91357 1.22046 0.89446 0.91207 0.94604 1.20799 1.03469 1.00756 0.91126 1.68340 1.22511 1.37692 0.97621 0.92133 0.93047 0.92461 0.89965 0.90746 0.94448 0.93057 0.92622 0.91035 0.90788 0.90916 0.89600 0.89701 0.90102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.53 10.24 37.16 0.38 -2.15 16 2 C 0.12 2.27 6.14 -4.04 -0.02 2.25 16 3 N -0.55 -12.42 2.56 -177.27 -0.45 -12.87 16 4 C 0.25 6.64 5.17 -5.19 -0.03 6.61 16 5 C -0.53 -15.00 9.39 -34.44 -0.32 -15.33 16 6 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 7 C 0.06 1.85 5.46 -17.82 -0.10 1.75 16 8 N -0.89 -26.39 13.29 55.43 0.74 -25.65 16 9 Si 0.90 22.06 29.54 -169.99 -5.02 17.04 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 13 C 0.51 11.40 8.23 -322.21 -2.65 8.75 16 14 N -0.31 -7.46 10.30 29.84 0.31 -7.15 16 15 N -0.15 -3.25 11.56 33.66 0.39 -2.86 16 16 C -0.08 -1.38 6.87 -82.26 -0.57 -1.95 16 17 C -0.08 -0.89 9.83 36.01 0.35 -0.53 16 18 C 0.19 2.97 6.82 -82.17 -0.56 2.41 16 19 C -0.10 -1.04 9.84 36.01 0.35 -0.69 16 20 N -0.53 -10.23 9.20 -10.00 -0.09 -10.32 16 21 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 22 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 23 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 24 H 0.08 1.50 8.07 -51.93 -0.42 1.08 16 25 H 0.07 1.30 7.35 -51.93 -0.38 0.91 16 26 H 0.04 0.99 8.07 -51.93 -0.42 0.57 16 27 H 0.05 1.48 7.36 -51.93 -0.38 1.10 16 28 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.07 0.59 6.05 -51.93 -0.31 0.27 16 32 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.08 0.62 6.05 -51.93 -0.31 0.31 16 34 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 291.82 15.07 4.40 4.40 Total: -1.00 -32.71 291.82 -7.63 -40.34 By element: Atomic # 1 Polarization: 0.68 SS G_CDS: -4.73 Total: -4.05 kcal Atomic # 6 Polarization: 4.28 SS G_CDS: -3.16 Total: 1.12 kcal Atomic # 7 Polarization: -59.74 SS G_CDS: 0.89 Total: -58.85 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -32.71 -7.63 -40.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158842102.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.609 kcal (2) G-P(sol) polarization free energy of solvation -32.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds