Wall clock time and date at job start Sun Mar 29 2020 21:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46509 * 109.47072 * 2 1 4 4 C 1.46499 * 119.99802 * 270.00378 * 3 2 1 5 5 C 1.50698 * 109.46658 * 269.99613 * 4 3 2 6 6 H 1.07999 * 120.00281 * 359.97438 * 5 4 3 7 7 C 1.37883 * 119.99992 * 180.02562 * 5 4 3 8 8 N 1.31511 * 119.99653 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00049 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47296 * 89.99955 * 9 7 5 11 11 H 1.48503 * 109.46685 * 209.99752 * 9 7 5 12 12 H 1.48495 * 109.47007 * 329.99364 * 9 7 5 13 13 C 1.38425 * 119.99827 * 89.99944 * 3 2 1 14 14 N 1.32727 * 119.65622 * 180.02562 * 13 3 2 15 15 N 1.28735 * 121.24214 * 179.97438 * 14 13 3 16 16 C 1.32209 * 120.48194 * 359.73374 * 15 14 13 17 17 C 1.50704 * 120.35212 * 180.25759 * 16 15 14 18 18 C 1.38696 * 119.29096 * 0.51894 * 16 15 14 19 19 C 1.50706 * 120.58058 * 179.76692 * 18 16 15 20 20 N 1.32414 * 118.83892 * 359.48639 * 18 16 15 21 21 H 1.09001 * 109.46868 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.47274 * 299.99786 * 1 2 3 23 23 H 1.09007 * 109.47237 * 59.99933 * 1 2 3 24 24 H 1.09000 * 109.47255 * 240.00680 * 2 1 3 25 25 H 1.08998 * 109.47484 * 120.00088 * 2 1 3 26 26 H 1.08997 * 109.47377 * 29.99675 * 4 3 2 27 27 H 1.09005 * 109.47093 * 150.00042 * 4 3 2 28 28 H 0.97004 * 119.99898 * 180.02562 * 8 7 5 29 29 H 1.08997 * 109.47048 * 270.26263 * 17 16 15 30 30 H 1.08998 * 109.46864 * 30.26541 * 17 16 15 31 31 H 1.09002 * 109.46894 * 150.26364 * 17 16 15 32 32 H 1.09001 * 109.46953 * 269.71501 * 19 18 16 33 33 H 1.09000 * 109.47318 * 29.71099 * 19 18 16 34 34 H 1.09000 * 109.47161 * 149.71729 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7037 6 1 4.3428 1.2310 -1.0957 7 6 4.1493 2.3906 -2.8775 8 7 3.3492 3.1266 -3.6176 9 14 5.9133 2.0965 -3.4170 10 1 5.9760 0.8760 -4.2606 11 1 6.3928 3.2641 -4.1994 12 1 6.7734 1.9158 -2.2201 13 6 2.2490 2.0338 1.1988 14 7 2.6909 3.2853 1.1909 15 7 2.9152 3.9212 2.2876 16 6 2.7037 3.3391 3.4556 17 6 2.9617 4.0881 4.7376 18 6 2.2471 2.0298 3.4885 19 6 2.0013 1.3363 4.8038 20 7 2.0255 1.4017 2.3440 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3634 0.5139 -0.8900 24 1 1.8933 -0.5137 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 1.5816 1.6878 -2.0284 27 1 2.0954 3.1412 -1.1384 28 1 3.6753 3.5170 -4.4435 29 1 3.9942 3.9304 5.0491 30 1 2.7890 5.1524 4.5776 31 1 2.2884 3.7234 5.5133 32 1 2.9110 0.8266 5.1213 33 1 1.7165 2.0728 5.5552 34 1 1.1989 0.6080 4.6861 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000158842102.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:39 Heat of formation + Delta-G solvation = 53.205280 kcal Electronic energy + Delta-G solvation = -16752.749454 eV Core-core repulsion = 14106.751058 eV Total energy + Delta-G solvation = -2645.998396 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.57385 -38.58976 -36.19161 -35.13982 -34.44556 -31.95954 -30.24445 -29.39857 -27.94897 -25.34161 -24.61131 -24.03299 -21.90463 -19.75771 -18.74249 -18.05940 -16.93113 -16.67442 -15.96480 -15.69013 -15.06270 -14.94123 -14.42366 -14.14374 -13.97068 -13.87053 -13.58100 -13.36103 -13.11681 -12.91903 -12.76829 -12.71839 -12.56651 -12.27731 -12.17521 -12.05497 -11.84143 -11.75087 -10.96016 -10.65575 -9.97714 -8.89544 -8.20288 -6.38218 -0.16599 0.15360 1.33821 1.36641 1.46520 1.80931 2.36132 2.71790 2.91988 3.06037 3.34441 3.55649 3.95788 4.05603 4.22350 4.35196 4.51264 4.61430 4.71279 4.73882 4.86701 4.90490 4.95731 4.98019 5.08958 5.12912 5.21464 5.28809 5.48186 5.58762 5.82620 6.01721 6.32836 6.46199 6.72550 7.30490 7.87182 8.83089 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.024896 B = 0.007629 C = 0.006464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.388985 B = 3669.423024 C = 4330.916636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.123 3.877 3 N -0.565 5.565 4 C 0.276 3.724 5 C -0.540 4.540 6 H 0.044 0.956 7 C 0.015 3.985 8 N -0.924 5.924 9 Si 0.965 3.035 10 H -0.263 1.263 11 H -0.277 1.277 12 H -0.279 1.279 13 C 0.488 3.512 14 N -0.375 5.375 15 N -0.199 5.199 16 C -0.067 4.067 17 C -0.079 4.079 18 C 0.190 3.810 19 C -0.099 4.099 20 N -0.534 5.534 21 H 0.096 0.904 22 H 0.045 0.955 23 H 0.042 0.958 24 H 0.076 0.924 25 H 0.085 0.915 26 H 0.026 0.974 27 H 0.013 0.987 28 H 0.268 0.732 29 H 0.091 0.909 30 H 0.072 0.928 31 H 0.116 0.884 32 H 0.110 0.890 33 H 0.122 0.878 34 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.844 -5.401 17.523 18.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.000 4.000 3 N -0.279 5.279 4 C 0.155 3.845 5 C -0.579 4.579 6 H 0.062 0.938 7 C -0.185 4.185 8 N -0.563 5.563 9 Si 0.790 3.210 10 H -0.188 1.188 11 H -0.202 1.202 12 H -0.204 1.204 13 C 0.131 3.869 14 N -0.232 5.232 15 N -0.047 5.047 16 C -0.223 4.223 17 C -0.137 4.137 18 C 0.029 3.971 19 C -0.156 4.156 20 N -0.263 5.263 21 H 0.115 0.885 22 H 0.064 0.936 23 H 0.061 0.939 24 H 0.095 0.905 25 H 0.103 0.897 26 H 0.044 0.956 27 H 0.032 0.968 28 H 0.077 0.923 29 H 0.110 0.890 30 H 0.091 0.909 31 H 0.134 0.866 32 H 0.128 0.872 33 H 0.140 0.860 34 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.751 -4.982 16.077 17.244 hybrid contribution 0.757 -0.150 -0.364 0.853 sum -2.994 -5.132 15.713 16.798 Atomic orbital electron populations 1.22032 0.94595 1.03267 1.00919 1.21536 0.95169 0.80287 1.02984 1.46849 1.65175 1.13970 1.01888 1.18853 0.95337 0.91910 0.78439 1.21575 0.97595 1.32130 1.06587 0.93809 1.25754 1.02140 0.94355 0.96250 1.70032 1.37628 1.33913 1.14739 0.85457 0.79176 0.78343 0.78047 1.18810 1.20223 1.20386 1.21037 0.89603 0.88414 0.87892 1.73825 1.21039 1.08113 1.20256 1.73344 1.07047 1.28699 0.95606 1.23899 1.04052 0.96179 0.98124 1.20674 1.04252 0.99548 0.89264 1.23230 0.86794 0.91237 0.95833 1.21073 1.04880 1.01653 0.88003 1.68453 1.22641 1.37617 0.97592 0.88536 0.93619 0.93877 0.90513 0.89709 0.95648 0.96848 0.92263 0.89032 0.90870 0.86607 0.87231 0.85978 0.89236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.61 10.24 71.98 0.74 -3.87 16 2 C 0.12 4.56 6.14 86.38 0.53 5.09 16 3 N -0.57 -26.75 2.56 -714.76 -1.83 -28.58 16 4 C 0.28 15.40 5.17 85.63 0.44 15.84 16 5 C -0.54 -32.08 9.39 25.60 0.24 -31.84 16 6 H 0.04 2.64 7.81 -2.91 -0.02 2.62 16 7 C 0.01 0.85 5.46 84.66 0.46 1.32 16 8 N -0.92 -56.39 13.29 21.45 0.28 -56.10 16 9 Si 0.97 46.06 29.54 68.60 2.03 48.09 16 10 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 11 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 12 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 13 C 0.49 22.78 8.23 261.28 2.15 24.93 16 14 N -0.37 -19.14 10.30 -59.51 -0.61 -19.75 16 15 N -0.20 -8.65 11.56 -47.43 -0.55 -9.20 16 16 C -0.07 -2.10 6.87 42.61 0.29 -1.81 16 17 C -0.08 -1.44 9.83 71.24 0.70 -0.74 16 18 C 0.19 5.55 6.82 42.58 0.29 5.84 16 19 C -0.10 -1.47 9.84 71.24 0.70 -0.77 16 20 N -0.53 -20.15 9.20 -185.55 -1.71 -21.86 16 21 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 22 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 23 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 24 H 0.08 2.87 8.07 -2.39 -0.02 2.85 16 25 H 0.08 2.92 7.35 -2.39 -0.02 2.90 16 26 H 0.03 1.45 8.07 -2.39 -0.02 1.43 16 27 H 0.01 0.84 7.36 -2.38 -0.02 0.82 16 28 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 29 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.12 1.14 6.05 -2.39 -0.01 1.13 16 32 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.12 0.95 6.05 -2.39 -0.01 0.94 16 34 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -76.88 291.82 5.25 -71.63 By element: Atomic # 1 Polarization: 0.68 SS G_CDS: 1.09 Total: 1.77 kcal Atomic # 6 Polarization: 7.45 SS G_CDS: 6.55 Total: 14.00 kcal Atomic # 7 Polarization: -131.07 SS G_CDS: -4.41 Total: -135.48 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Total: -76.88 5.25 -71.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158842102.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.833 kcal (2) G-P(sol) polarization free energy of solvation -76.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds