Wall clock time and date at job start Sun Mar 29 2020 22:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39765 * 120.09393 * 11.66373 * 3 2 1 5 5 C 1.37736 * 119.92453 * 180.27380 * 4 3 2 6 6 C 1.38941 * 120.11128 * 359.51076 * 5 4 3 7 7 O 1.35780 * 119.91313 * 180.21230 * 6 5 4 8 8 C 1.42902 * 116.99795 * 0.24993 * 7 6 5 9 9 C 1.50693 * 109.46978 * 180.02562 * 8 7 6 10 10 H 1.07994 * 120.00184 * 359.97438 * 9 8 7 11 11 C 1.37886 * 119.99893 * 180.02562 * 9 8 7 12 12 N 1.31514 * 119.99803 * 179.97438 * 11 9 8 13 13 Si 1.86795 * 119.99904 * 0.02562 * 11 9 8 14 14 H 1.48504 * 109.47562 * 89.99735 * 13 11 9 15 15 H 1.48503 * 109.47111 * 209.99820 * 13 11 9 16 16 H 1.48497 * 109.47115 * 329.99858 * 13 11 9 17 17 C 1.39043 * 120.17885 * 0.46601 * 6 5 4 18 18 Cl 1.73602 * 119.96428 * 179.76894 * 17 6 5 19 19 C 1.37854 * 120.07717 * 359.78920 * 17 6 5 20 20 H 1.08002 * 120.03389 * 359.97438 * 4 3 2 21 21 H 1.07997 * 119.94542 * 179.72131 * 5 4 3 22 22 H 1.09005 * 109.47107 * 300.00311 * 8 7 6 23 23 H 1.08998 * 109.46755 * 60.00047 * 8 7 6 24 24 H 0.97001 * 119.99430 * 180.02562 * 12 11 9 25 25 H 1.07999 * 120.05635 * 180.02562 * 19 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2694 -1.1833 -0.2445 5 6 4.6467 -1.1799 -0.2381 6 6 5.3397 0.0004 0.0009 7 8 6.6975 0.0001 0.0020 8 6 7.3461 -1.2471 -0.2549 9 6 8.8401 -1.0542 -0.2131 10 1 9.2530 -0.0770 -0.0110 11 6 9.6799 -2.1253 -0.4340 12 7 10.9837 -1.9569 -0.3980 13 14 8.9657 -3.8151 -0.7857 14 1 8.7785 -3.9786 -2.2498 15 1 9.8958 -4.8594 -0.2860 16 1 7.6550 -3.9509 -0.1010 17 6 4.6466 1.1809 0.2442 18 17 5.5181 2.6513 0.5480 19 6 3.2680 1.1851 0.2447 20 1 2.7319 -2.1008 -0.4334 21 1 5.1890 -2.0955 -0.4225 22 1 7.0524 -1.9725 0.5038 23 1 7.0539 -1.6124 -1.2394 24 1 11.5745 -2.7103 -0.5538 25 1 2.7299 2.1023 0.4333 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000160564468.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:46 Heat of formation + Delta-G solvation = 5.981081 kcal Electronic energy + Delta-G solvation = -13449.326810 eV Core-core repulsion = 10840.312182 eV Total energy + Delta-G solvation = -2609.014628 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 237.030 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.06144 -37.73533 -36.47457 -35.89923 -32.97920 -31.06531 -30.50730 -28.46970 -23.96568 -23.21526 -21.67183 -19.07466 -17.94365 -16.83816 -16.09670 -15.33818 -15.05405 -14.59085 -14.21188 -13.99950 -13.80035 -13.25113 -12.86769 -12.79720 -12.47987 -12.13289 -11.46308 -11.28229 -11.26009 -11.16034 -10.69132 -10.47245 -10.11880 -9.52338 -9.03054 -8.86725 -8.02458 -6.34121 -4.37772 0.78375 1.06607 2.20958 2.66003 2.85762 3.08579 3.12830 3.17167 3.64291 3.73620 3.88742 4.13566 4.71247 4.81775 4.95444 5.02347 5.37865 5.59913 5.75494 5.95952 6.10669 6.18778 6.45438 6.50728 7.19711 7.41817 7.64998 8.29730 8.75470 9.19817 10.77928 Molecular weight = 237.03amu Principal moments of inertia in cm(-1) A = 0.028994 B = 0.006780 C = 0.005512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.476246 B = 4128.506285 C = 5078.837248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C 0.270 3.730 3 C -0.086 4.086 4 C -0.020 4.020 5 C -0.210 4.210 6 C 0.193 3.807 7 O -0.279 6.279 8 C 0.163 3.837 9 C -0.532 4.532 10 H 0.089 0.911 11 C 0.080 3.920 12 N -0.883 5.883 13 Si 0.872 3.128 14 H -0.270 1.270 15 H -0.278 1.278 16 H -0.264 1.264 17 C -0.088 4.088 18 Cl -0.048 7.048 19 C -0.022 4.022 20 H 0.137 0.863 21 H 0.149 0.851 22 H 0.026 0.974 23 H 0.021 0.979 24 H 0.271 0.729 25 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.585 2.223 0.459 12.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.110 5.110 2 C -0.045 4.045 3 C -0.090 4.090 4 C -0.040 4.040 5 C -0.229 4.229 6 C 0.141 3.859 7 O -0.188 6.188 8 C 0.090 3.910 9 C -0.570 4.570 10 H 0.107 0.893 11 C -0.124 4.124 12 N -0.520 5.520 13 Si 0.698 3.302 14 H -0.195 1.195 15 H -0.203 1.203 16 H -0.189 1.189 17 C -0.115 4.115 18 Cl -0.019 7.019 19 C -0.043 4.043 20 H 0.155 0.845 21 H 0.166 0.834 22 H 0.043 0.957 23 H 0.039 0.961 24 H 0.081 0.919 25 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -13.878 2.408 0.500 14.094 hybrid contribution 0.321 -1.065 -0.234 1.136 sum -13.557 1.343 0.265 13.626 Atomic orbital electron populations 1.81239 1.12006 1.07527 1.10276 1.25519 0.92353 0.93585 0.93038 1.15591 0.84340 0.95004 1.14114 1.20993 0.93363 0.96582 0.93081 1.21312 0.94458 0.98408 1.08726 1.19281 0.85710 0.91877 0.89010 1.86285 1.12603 1.38176 1.81748 1.21220 0.94361 0.79837 0.95615 1.20707 0.86385 0.98935 1.50971 0.89297 1.24697 0.94649 0.98673 0.94379 1.69841 1.02256 1.32073 1.47836 0.86913 0.79680 0.84153 0.79434 1.19532 1.20345 1.18895 1.19935 0.91362 0.87729 1.12492 1.98378 1.76399 1.32738 1.94369 1.20748 0.91039 0.97561 0.94929 0.84519 0.83363 0.95684 0.96141 0.91888 0.83839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -6.10 18.54 41.84 0.78 -5.33 15 2 C 0.27 3.28 15.33 -22.47 -0.34 2.94 15 3 C -0.09 -0.98 5.74 -106.84 -0.61 -1.60 15 4 C -0.02 -0.22 9.75 -39.19 -0.38 -0.60 15 5 C -0.21 -2.89 9.01 -39.50 -0.36 -3.24 15 6 C 0.19 3.15 6.69 -39.02 -0.26 2.89 15 7 O -0.28 -5.70 9.56 -19.05 -0.18 -5.89 15 8 C 0.16 3.56 3.56 36.00 0.13 3.69 15 9 C -0.53 -14.31 9.99 -34.44 -0.34 -14.65 15 10 H 0.09 2.65 8.06 -52.49 -0.42 2.23 15 11 C 0.08 2.15 5.47 -17.82 -0.10 2.05 15 12 N -0.88 -25.37 13.96 55.43 0.77 -24.60 15 13 Si 0.87 19.15 27.47 -169.99 -4.67 14.48 15 14 H -0.27 -5.80 7.11 56.52 0.40 -5.40 15 15 H -0.28 -6.10 7.11 56.52 0.40 -5.70 15 16 H -0.26 -5.35 6.54 56.52 0.37 -4.98 15 17 C -0.09 -1.26 6.33 -39.42 -0.25 -1.51 15 18 Cl -0.05 -0.70 28.49 -51.86 -1.48 -2.18 15 19 C -0.02 -0.25 9.53 -39.16 -0.37 -0.62 15 20 H 0.14 1.18 8.06 -52.49 -0.42 0.75 15 21 H 0.15 2.00 6.27 -52.49 -0.33 1.67 15 22 H 0.03 0.53 6.70 -51.93 -0.35 0.18 15 23 H 0.02 0.43 7.09 -51.93 -0.37 0.06 15 24 H 0.27 7.19 8.31 -40.82 -0.34 6.86 15 25 H 0.14 1.34 8.06 -52.49 -0.42 0.92 15 LS Contribution 252.70 15.07 3.81 3.81 Total: -1.00 -28.42 252.70 -5.34 -33.77 By element: Atomic # 1 Polarization: -1.93 SS G_CDS: -1.48 Total: -3.41 kcal Atomic # 6 Polarization: -7.76 SS G_CDS: -2.89 Total: -10.65 kcal Atomic # 7 Polarization: -31.48 SS G_CDS: 1.55 Total: -29.93 kcal Atomic # 8 Polarization: -5.70 SS G_CDS: -0.18 Total: -5.89 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -4.67 Total: 14.48 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -1.48 Total: -2.18 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -28.42 -5.34 -33.77 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160564468.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.747 kcal (2) G-P(sol) polarization free energy of solvation -28.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds