Wall clock time and date at job start Sun Mar 29 2020 22:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39765 * 120.09393 * 11.66373 * 3 2 1 5 5 C 1.37736 * 119.92453 * 180.27380 * 4 3 2 6 6 C 1.38941 * 120.11128 * 359.51076 * 5 4 3 7 7 O 1.35780 * 119.91313 * 180.21230 * 6 5 4 8 8 C 1.42902 * 116.99795 * 0.24993 * 7 6 5 9 9 C 1.50693 * 109.46978 * 180.02562 * 8 7 6 10 10 H 1.07994 * 120.00184 * 359.97438 * 9 8 7 11 11 C 1.37886 * 119.99893 * 180.02562 * 9 8 7 12 12 N 1.31514 * 119.99803 * 179.97438 * 11 9 8 13 13 Si 1.86795 * 119.99904 * 0.02562 * 11 9 8 14 14 H 1.48504 * 109.47562 * 89.99735 * 13 11 9 15 15 H 1.48503 * 109.47111 * 209.99820 * 13 11 9 16 16 H 1.48497 * 109.47115 * 329.99858 * 13 11 9 17 17 C 1.39043 * 120.17885 * 0.46601 * 6 5 4 18 18 Cl 1.73602 * 119.96428 * 179.76894 * 17 6 5 19 19 C 1.37854 * 120.07717 * 359.78920 * 17 6 5 20 20 H 1.08002 * 120.03389 * 359.97438 * 4 3 2 21 21 H 1.07997 * 119.94542 * 179.72131 * 5 4 3 22 22 H 1.09005 * 109.47107 * 300.00311 * 8 7 6 23 23 H 1.08998 * 109.46755 * 60.00047 * 8 7 6 24 24 H 0.97001 * 119.99430 * 180.02562 * 12 11 9 25 25 H 1.07999 * 120.05635 * 180.02562 * 19 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2694 -1.1833 -0.2445 5 6 4.6467 -1.1799 -0.2381 6 6 5.3397 0.0004 0.0009 7 8 6.6975 0.0001 0.0020 8 6 7.3461 -1.2471 -0.2549 9 6 8.8401 -1.0542 -0.2131 10 1 9.2530 -0.0770 -0.0110 11 6 9.6799 -2.1253 -0.4340 12 7 10.9837 -1.9569 -0.3980 13 14 8.9657 -3.8151 -0.7857 14 1 8.7785 -3.9786 -2.2498 15 1 9.8958 -4.8594 -0.2860 16 1 7.6550 -3.9509 -0.1010 17 6 4.6466 1.1809 0.2442 18 17 5.5181 2.6513 0.5480 19 6 3.2680 1.1851 0.2447 20 1 2.7319 -2.1008 -0.4334 21 1 5.1890 -2.0955 -0.4225 22 1 7.0524 -1.9725 0.5038 23 1 7.0539 -1.6124 -1.2394 24 1 11.5745 -2.7103 -0.5538 25 1 2.7299 2.1023 0.4333 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000160564468.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:45 Heat of formation + Delta-G solvation = -10.969570 kcal Electronic energy + Delta-G solvation = -13450.061846 eV Core-core repulsion = 10840.312182 eV Total energy + Delta-G solvation = -2609.749664 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 237.030 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.23945 -38.97619 -37.59666 -36.99324 -34.95998 -32.11370 -31.75298 -30.15812 -25.41400 -24.31910 -23.12802 -20.12205 -19.47417 -18.54352 -17.38630 -16.75748 -16.35099 -16.00001 -15.38146 -15.07861 -14.89338 -14.62747 -14.29050 -14.03085 -13.75638 -13.27324 -13.05914 -12.97621 -12.42880 -12.38668 -11.94476 -11.84691 -11.76075 -11.44243 -10.85819 -10.03474 -9.22131 -8.37946 -6.49354 -0.26580 0.07344 1.12269 1.37911 1.41255 1.50442 1.66642 1.82289 2.29711 2.33883 2.74219 2.85519 2.95103 3.72132 3.84194 3.99931 4.33364 4.40550 4.65793 4.75409 4.82595 5.05730 5.11092 5.34200 5.43350 5.92685 6.44310 6.53520 6.64214 7.13898 8.78490 Molecular weight = 237.03amu Principal moments of inertia in cm(-1) A = 0.028994 B = 0.006780 C = 0.005512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.476246 B = 4128.506285 C = 5078.837248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C 0.292 3.708 3 C -0.072 4.072 4 C -0.001 4.001 5 C -0.209 4.209 6 C 0.160 3.840 7 O -0.311 6.311 8 C 0.174 3.826 9 C -0.553 4.553 10 H 0.033 0.967 11 C 0.017 3.983 12 N -0.938 5.938 13 Si 0.950 3.050 14 H -0.258 1.258 15 H -0.279 1.279 16 H -0.229 1.229 17 C -0.096 4.096 18 Cl -0.061 7.061 19 C -0.009 4.009 20 H 0.172 0.828 21 H 0.155 0.845 22 H 0.041 0.959 23 H 0.039 0.961 24 H 0.274 0.726 25 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.578 0.365 0.092 15.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.137 5.137 2 C -0.022 4.022 3 C -0.076 4.076 4 C -0.021 4.021 5 C -0.228 4.228 6 C 0.110 3.890 7 O -0.223 6.223 8 C 0.101 3.899 9 C -0.591 4.591 10 H 0.052 0.948 11 C -0.182 4.182 12 N -0.577 5.577 13 Si 0.770 3.230 14 H -0.182 1.182 15 H -0.204 1.204 16 H -0.152 1.152 17 C -0.124 4.124 18 Cl -0.032 7.032 19 C -0.029 4.029 20 H 0.190 0.810 21 H 0.173 0.827 22 H 0.059 0.941 23 H 0.057 0.943 24 H 0.084 0.916 25 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -16.914 0.578 0.139 16.924 hybrid contribution 1.166 -0.345 -0.094 1.219 sum -15.748 0.233 0.045 15.750 Atomic orbital electron populations 1.81291 1.12881 1.08446 1.11109 1.25355 0.92014 0.92684 0.92163 1.15599 0.83908 0.95059 1.13026 1.21291 0.92313 0.97718 0.90825 1.21408 0.95412 0.97523 1.08486 1.19608 0.84105 0.93761 0.91515 1.86199 1.15265 1.37358 1.83449 1.20884 0.91199 0.80957 0.96868 1.20998 0.89940 0.96961 1.51178 0.94813 1.25813 0.94785 1.03958 0.93615 1.70020 1.04329 1.33868 1.49460 0.85693 0.80194 0.76969 0.80113 1.18202 1.20432 1.15178 1.20075 0.92146 0.86894 1.13281 1.98374 1.76936 1.33374 1.94510 1.20948 0.89850 0.98782 0.93370 0.81013 0.82720 0.94130 0.94297 0.91649 0.81452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -11.51 18.54 19.00 0.35 -11.15 15 2 C 0.29 5.99 15.33 88.33 1.35 7.35 15 3 C -0.07 -1.35 5.74 -21.30 -0.12 -1.47 15 4 C 0.00 -0.02 9.75 22.52 0.22 0.20 15 5 C -0.21 -5.07 9.01 22.32 0.20 -4.87 15 6 C 0.16 5.00 6.69 22.63 0.15 5.15 15 7 O -0.31 -12.85 9.56 -91.08 -0.87 -13.72 15 8 C 0.17 7.52 3.56 71.23 0.25 7.78 15 9 C -0.55 -30.82 9.99 25.60 0.26 -30.56 15 10 H 0.03 2.17 8.06 -2.91 -0.02 2.14 15 11 C 0.02 0.94 5.47 84.66 0.46 1.40 15 12 N -0.94 -55.95 13.96 21.45 0.30 -55.65 15 13 Si 0.95 38.49 27.47 68.60 1.88 40.37 15 14 H -0.26 -9.89 7.11 99.48 0.71 -9.18 15 15 H -0.28 -11.26 7.11 99.48 0.71 -10.56 15 16 H -0.23 -7.93 6.54 99.48 0.65 -7.28 15 17 C -0.10 -2.63 6.33 22.37 0.14 -2.49 15 18 Cl -0.06 -1.79 28.49 -2.72 -0.08 -1.87 15 19 C -0.01 -0.17 9.53 22.54 0.21 0.04 15 20 H 0.17 1.93 8.06 -2.91 -0.02 1.91 15 21 H 0.16 3.56 6.27 -2.91 -0.02 3.54 15 22 H 0.04 1.61 6.70 -2.38 -0.02 1.60 15 23 H 0.04 1.53 7.09 -2.39 -0.02 1.51 15 24 H 0.27 15.03 8.31 -92.71 -0.77 14.26 15 25 H 0.17 2.58 8.06 -2.91 -0.02 2.55 15 Total: -1.00 -64.90 252.70 5.89 -59.01 By element: Atomic # 1 Polarization: -0.68 SS G_CDS: 1.17 Total: 0.49 kcal Atomic # 6 Polarization: -20.61 SS G_CDS: 3.13 Total: -17.48 kcal Atomic # 7 Polarization: -67.46 SS G_CDS: 0.65 Total: -66.81 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: -0.87 Total: -13.72 kcal Atomic # 14 Polarization: 38.49 SS G_CDS: 1.88 Total: 40.37 kcal Atomic # 17 Polarization: -1.79 SS G_CDS: -0.08 Total: -1.87 kcal Total: -64.90 5.89 -59.01 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160564468.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.042 kcal (2) G-P(sol) polarization free energy of solvation -64.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds