Wall clock time and date at job start Sun Mar 29 2020 21:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 110.36997 * 2 1 4 4 C 1.54263 * 110.32263 * 122.18439 * 2 1 3 5 5 C 1.54371 * 105.06268 * 118.89818 * 4 2 1 6 6 N 1.48562 * 104.59633 * 336.14289 * 5 4 2 7 7 C 1.46900 * 111.00500 * 159.03973 * 6 5 4 8 8 C 1.53002 * 109.46619 * 69.87554 * 7 6 5 9 9 H 1.09002 * 109.47070 * 55.00278 * 8 7 6 10 10 C 1.47194 * 109.47253 * 295.00217 * 8 7 6 11 11 N 5.40017 * 122.82656 * 163.80628 * 2 1 3 12 12 C 1.52997 * 109.46817 * 175.00098 * 8 7 6 13 13 C 1.50705 * 109.47390 * 184.99865 * 12 8 7 14 14 H 1.08000 * 119.99498 * 0.02562 * 13 12 8 15 15 C 1.37870 * 120.00441 * 180.02562 * 13 12 8 16 16 N 1.31513 * 119.99840 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 120.00083 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.46926 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.46855 * 119.99990 * 17 15 13 20 20 H 1.48496 * 109.46967 * 239.99783 * 17 15 13 21 21 C 1.48570 * 104.21816 * 39.48488 * 6 5 4 22 22 H 1.09001 * 109.46883 * 299.27533 * 1 2 3 23 23 H 1.09000 * 109.46862 * 59.26971 * 1 2 3 24 24 H 1.09000 * 109.47121 * 179.27264 * 1 2 3 25 25 H 1.08997 * 109.47655 * 180.72518 * 3 2 1 26 26 H 1.08999 * 109.47366 * 300.72992 * 3 2 1 27 27 H 1.09001 * 109.47195 * 60.72913 * 3 2 1 28 28 H 1.08997 * 110.32344 * 359.97438 * 4 2 1 29 29 H 1.09003 * 110.40796 * 237.83589 * 4 2 1 30 30 H 1.08997 * 110.41276 * 217.36955 * 5 4 2 31 31 H 1.09000 * 110.51522 * 94.97251 * 5 4 2 32 32 H 1.09000 * 109.47154 * 309.87920 * 7 6 5 33 33 H 1.08996 * 109.47574 * 189.87463 * 7 6 5 34 34 H 1.09001 * 109.47630 * 305.00128 * 12 8 7 35 35 H 1.09004 * 109.47346 * 65.00258 * 12 8 7 36 36 H 0.97002 * 119.99729 * 180.02562 * 16 15 13 37 37 H 1.09004 * 110.40604 * 79.29962 * 21 6 5 38 38 H 1.09001 * 110.40671 * 201.73783 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0626 1.4343 0.0000 4 6 2.0658 -0.7705 1.2243 5 6 2.8806 -1.9422 0.6358 6 7 2.3148 -2.1468 -0.7225 7 6 3.2649 -2.8595 -1.5869 8 6 3.3945 -4.3093 -1.1156 9 1 2.4072 -4.7701 -1.0822 10 6 3.9944 -4.3367 0.2283 11 7 4.4574 -4.3578 1.2655 12 6 4.2862 -5.0839 -2.0880 13 6 4.3149 -6.5382 -1.6938 14 1 3.7530 -6.8762 -0.8357 15 6 5.0586 -7.4371 -2.4285 16 7 5.7425 -7.0255 -3.4737 17 14 5.0936 -9.2398 -1.9402 18 1 4.2455 -9.4436 -0.7384 19 1 4.5726 -10.0658 -3.0589 20 1 6.4899 -9.6431 -1.6356 21 6 2.0662 -0.7710 -1.2253 22 1 -0.3633 0.5025 0.8964 23 1 -0.3633 0.5251 -0.8834 24 1 -0.3633 -1.0276 -0.0130 25 1 3.1523 1.4173 -0.0130 26 1 1.6968 1.9577 -0.8833 27 1 1.7180 1.9498 0.8965 28 1 1.2388 -1.1483 1.8254 29 1 2.7078 -0.1278 1.8268 30 1 2.7489 -2.8388 1.2414 31 1 3.9365 -1.6791 0.5721 32 1 4.2387 -2.3724 -1.5356 33 1 2.9039 -2.8426 -2.6152 34 1 3.8895 -4.9892 -3.0989 35 1 5.2975 -4.6785 -2.0552 36 1 6.2654 -7.6581 -3.9909 37 1 2.9942 -0.3227 -1.5804 38 1 1.3213 -0.7859 -2.0209 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174254792.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:10 Heat of formation + Delta-G solvation = 10.780842 kcal Electronic energy + Delta-G solvation = -16819.401941 eV Core-core repulsion = 14275.104227 eV Total energy + Delta-G solvation = -2544.297714 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.61399 -36.75040 -34.37616 -33.38091 -31.52845 -29.54896 -27.42420 -27.10000 -24.87973 -23.25130 -21.79002 -20.85665 -18.98426 -16.87158 -16.43128 -15.63218 -15.23332 -14.54687 -14.29628 -13.90922 -13.70257 -13.48066 -13.11734 -12.68459 -12.50402 -12.38112 -12.20633 -11.92785 -11.78225 -11.48220 -11.21262 -11.10068 -10.88546 -10.77112 -10.64828 -10.57502 -10.51968 -10.31364 -10.22145 -9.50689 -9.19610 -8.45142 -8.32744 -6.08906 -4.11828 3.29149 3.37247 3.42191 3.60424 3.66618 4.13823 4.42104 4.49378 4.65095 4.82305 4.85847 5.23097 5.29229 5.30392 5.33849 5.48640 5.52587 5.60219 5.65853 5.71820 5.79220 5.82686 5.91070 5.99536 6.07677 6.11920 6.17598 6.22404 6.32869 6.38582 6.56554 6.97102 7.19188 7.44625 7.54217 7.86601 8.24290 8.43616 8.93032 9.53707 11.02111 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.048201 B = 0.005058 C = 0.004865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.760045 B = 5534.437598 C = 5753.424727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.071 4.071 3 C -0.138 4.138 4 C -0.115 4.115 5 C 0.025 3.975 6 N -0.509 5.509 7 C 0.052 3.948 8 C 0.009 3.991 9 H 0.110 0.890 10 C 0.249 3.751 11 N -0.481 5.481 12 C 0.032 3.968 13 C -0.525 4.525 14 H 0.057 0.943 15 C 0.062 3.938 16 N -0.892 5.892 17 Si 0.891 3.109 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.284 1.284 21 C 0.040 3.960 22 H 0.050 0.950 23 H 0.052 0.948 24 H 0.064 0.936 25 H 0.053 0.947 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.085 0.915 31 H 0.041 0.959 32 H 0.040 0.960 33 H 0.093 0.907 34 H 0.040 0.960 35 H 0.024 0.976 36 H 0.262 0.738 37 H 0.044 0.956 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.949 14.885 3.251 17.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.071 4.071 3 C -0.196 4.196 4 C -0.153 4.153 5 C -0.103 4.103 6 N -0.233 5.233 7 C -0.077 4.077 8 C -0.013 4.013 9 H 0.128 0.872 10 C -0.067 4.067 11 N -0.159 5.159 12 C -0.007 4.007 13 C -0.563 4.563 14 H 0.076 0.924 15 C -0.140 4.140 16 N -0.531 5.531 17 Si 0.719 3.281 18 H -0.197 1.197 19 H -0.208 1.208 20 H -0.210 1.210 21 C -0.088 4.088 22 H 0.069 0.931 23 H 0.071 0.929 24 H 0.083 0.917 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.103 0.897 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.112 0.888 34 H 0.058 0.942 35 H 0.042 0.958 36 H 0.071 0.929 37 H 0.062 0.938 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.619 14.453 4.679 17.467 hybrid contribution 0.830 -0.666 -0.274 1.099 sum -7.789 13.787 4.405 16.437 Atomic orbital electron populations 1.21819 0.93738 1.02361 1.01048 1.21298 0.96180 0.94653 0.95009 1.21889 1.00722 0.95323 1.01656 1.22460 0.99628 0.96327 0.96915 1.23365 0.96575 0.98908 0.91471 1.65461 1.41184 1.14519 1.02122 1.22411 0.94195 0.93337 0.97751 1.19290 1.01167 0.95579 0.85271 0.87229 1.29178 0.92167 0.91002 0.94339 1.81034 1.10820 1.10692 1.13312 1.19173 0.94037 0.94196 0.93280 1.21187 1.29422 0.92659 1.13030 0.92448 1.24950 0.95163 0.98990 0.94870 1.69950 1.30515 1.34839 1.17785 0.86537 0.77897 0.85073 0.78597 1.19662 1.20816 1.21006 1.23230 0.99861 0.88747 0.96949 0.93089 0.92891 0.91696 0.92764 0.92570 0.92617 0.91084 0.91641 0.89675 0.94040 0.94158 0.88819 0.94226 0.95806 0.92869 0.93812 0.89968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.25 8.23 37.16 0.31 -0.94 16 2 C -0.07 -0.74 1.03 -153.13 -0.16 -0.90 16 3 C -0.14 -1.23 8.25 37.16 0.31 -0.92 16 4 C -0.12 -1.36 6.29 -25.35 -0.16 -1.52 16 5 C 0.02 0.37 4.72 -2.19 -0.01 0.36 16 6 N -0.51 -7.27 5.37 -229.97 -1.24 -8.51 16 7 C 0.05 0.81 4.49 -3.82 -0.02 0.80 16 8 C 0.01 0.17 2.42 -93.41 -0.23 -0.06 16 9 H 0.11 2.02 8.14 -51.93 -0.42 1.60 16 10 C 0.25 5.17 10.65 -20.76 -0.22 4.95 16 11 N -0.48 -10.59 17.70 42.16 0.75 -9.85 16 12 C 0.03 0.74 4.42 -27.88 -0.12 0.62 16 13 C -0.52 -14.13 8.60 -34.44 -0.30 -14.42 16 14 H 0.06 1.55 7.59 -52.49 -0.40 1.15 16 15 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 16 N -0.89 -25.70 13.29 55.43 0.74 -24.97 16 17 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 18 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 21 C 0.04 0.47 5.58 -2.18 -0.01 0.46 16 22 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 23 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 24 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.05 0.50 8.12 -51.93 -0.42 0.08 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.82 7.71 -51.93 -0.40 0.42 16 29 H 0.06 0.72 7.72 -51.93 -0.40 0.32 16 30 H 0.09 1.42 5.80 -51.93 -0.30 1.12 16 31 H 0.04 0.65 7.71 -51.93 -0.40 0.25 16 32 H 0.04 0.64 7.88 -51.93 -0.41 0.23 16 33 H 0.09 1.33 8.13 -51.93 -0.42 0.91 16 34 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 37 H 0.04 0.51 7.70 -51.93 -0.40 0.11 16 38 H 0.08 0.90 7.86 -51.93 -0.41 0.49 16 LS Contribution 307.01 15.07 4.63 4.63 Total: -1.00 -29.15 307.01 -7.33 -36.49 By element: Atomic # 1 Polarization: 2.20 SS G_CDS: -6.48 Total: -4.28 kcal Atomic # 6 Polarization: -9.24 SS G_CDS: -0.71 Total: -9.95 kcal Atomic # 7 Polarization: -43.57 SS G_CDS: 0.25 Total: -43.32 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.15 -7.33 -36.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174254792.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.267 kcal (2) G-P(sol) polarization free energy of solvation -29.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds