Wall clock time and date at job start Sun Mar 29 2020 21:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 110.36997 * 2 1 4 4 C 1.54263 * 110.32263 * 122.18439 * 2 1 3 5 5 C 1.54371 * 105.06268 * 118.89818 * 4 2 1 6 6 N 1.48562 * 104.59633 * 336.14289 * 5 4 2 7 7 C 1.46900 * 111.00500 * 159.03973 * 6 5 4 8 8 C 1.53002 * 109.46619 * 69.87554 * 7 6 5 9 9 H 1.09002 * 109.47070 * 55.00278 * 8 7 6 10 10 C 1.47194 * 109.47253 * 295.00217 * 8 7 6 11 11 N 5.40017 * 122.82656 * 163.80628 * 2 1 3 12 12 C 1.52997 * 109.46817 * 175.00098 * 8 7 6 13 13 C 1.50705 * 109.47390 * 184.99865 * 12 8 7 14 14 H 1.08000 * 119.99498 * 0.02562 * 13 12 8 15 15 C 1.37870 * 120.00441 * 180.02562 * 13 12 8 16 16 N 1.31513 * 119.99840 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 120.00083 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.46926 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.46855 * 119.99990 * 17 15 13 20 20 H 1.48496 * 109.46967 * 239.99783 * 17 15 13 21 21 C 1.48570 * 104.21816 * 39.48488 * 6 5 4 22 22 H 1.09001 * 109.46883 * 299.27533 * 1 2 3 23 23 H 1.09000 * 109.46862 * 59.26971 * 1 2 3 24 24 H 1.09000 * 109.47121 * 179.27264 * 1 2 3 25 25 H 1.08997 * 109.47655 * 180.72518 * 3 2 1 26 26 H 1.08999 * 109.47366 * 300.72992 * 3 2 1 27 27 H 1.09001 * 109.47195 * 60.72913 * 3 2 1 28 28 H 1.08997 * 110.32344 * 359.97438 * 4 2 1 29 29 H 1.09003 * 110.40796 * 237.83589 * 4 2 1 30 30 H 1.08997 * 110.41276 * 217.36955 * 5 4 2 31 31 H 1.09000 * 110.51522 * 94.97251 * 5 4 2 32 32 H 1.09000 * 109.47154 * 309.87920 * 7 6 5 33 33 H 1.08996 * 109.47574 * 189.87463 * 7 6 5 34 34 H 1.09001 * 109.47630 * 305.00128 * 12 8 7 35 35 H 1.09004 * 109.47346 * 65.00258 * 12 8 7 36 36 H 0.97002 * 119.99729 * 180.02562 * 16 15 13 37 37 H 1.09004 * 110.40604 * 79.29962 * 21 6 5 38 38 H 1.09001 * 110.40671 * 201.73783 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0626 1.4343 0.0000 4 6 2.0658 -0.7705 1.2243 5 6 2.8806 -1.9422 0.6358 6 7 2.3148 -2.1468 -0.7225 7 6 3.2649 -2.8595 -1.5869 8 6 3.3945 -4.3093 -1.1156 9 1 2.4072 -4.7701 -1.0822 10 6 3.9944 -4.3367 0.2283 11 7 4.4574 -4.3578 1.2655 12 6 4.2862 -5.0839 -2.0880 13 6 4.3149 -6.5382 -1.6938 14 1 3.7530 -6.8762 -0.8357 15 6 5.0586 -7.4371 -2.4285 16 7 5.7425 -7.0255 -3.4737 17 14 5.0936 -9.2398 -1.9402 18 1 4.2455 -9.4436 -0.7384 19 1 4.5726 -10.0658 -3.0589 20 1 6.4899 -9.6431 -1.6356 21 6 2.0662 -0.7710 -1.2253 22 1 -0.3633 0.5025 0.8964 23 1 -0.3633 0.5251 -0.8834 24 1 -0.3633 -1.0276 -0.0130 25 1 3.1523 1.4173 -0.0130 26 1 1.6968 1.9577 -0.8833 27 1 1.7180 1.9498 0.8965 28 1 1.2388 -1.1483 1.8254 29 1 2.7078 -0.1278 1.8268 30 1 2.7489 -2.8388 1.2414 31 1 3.9365 -1.6791 0.5721 32 1 4.2387 -2.3724 -1.5356 33 1 2.9039 -2.8426 -2.6152 34 1 3.8895 -4.9892 -3.0989 35 1 5.2975 -4.6785 -2.0552 36 1 6.2654 -7.6581 -3.9909 37 1 2.9942 -0.3227 -1.5804 38 1 1.3213 -0.7859 -2.0209 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174254792.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:10 Heat of formation + Delta-G solvation = -6.600220 kcal Electronic energy + Delta-G solvation = -16820.155640 eV Core-core repulsion = 14275.104227 eV Total energy + Delta-G solvation = -2545.051414 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.68975 -38.24356 -35.91188 -35.05673 -33.16280 -30.66814 -28.71655 -28.10696 -26.19843 -24.52434 -23.63394 -22.02246 -19.86410 -18.55668 -18.31721 -16.97211 -16.37945 -16.30915 -15.50978 -15.01412 -14.78436 -14.73610 -14.38676 -14.06208 -13.94300 -13.84965 -13.52104 -13.45469 -13.00666 -12.76672 -12.64876 -12.51980 -12.27217 -12.26464 -12.10342 -11.90251 -11.58591 -11.45029 -11.42456 -11.31226 -11.05370 -10.56755 -9.47799 -8.20773 -6.29167 1.38534 1.41241 1.52072 1.93207 1.96595 2.40660 3.01605 3.14295 3.24071 3.60060 3.70570 3.95857 4.15200 4.26369 4.34704 4.43557 4.49484 4.60782 4.75182 4.78648 4.84407 4.86516 4.90601 4.93865 4.95584 5.08859 5.15095 5.19946 5.34432 5.39402 5.45015 5.53956 5.59846 5.77590 5.89464 6.01170 6.20176 6.73872 6.85579 7.39593 8.90483 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.048201 B = 0.005058 C = 0.004865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.760045 B = 5534.437598 C = 5753.424727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.067 4.067 3 C -0.135 4.135 4 C -0.112 4.112 5 C 0.025 3.975 6 N -0.513 5.513 7 C 0.062 3.938 8 C 0.020 3.980 9 H 0.120 0.880 10 C 0.256 3.744 11 N -0.506 5.506 12 C 0.039 3.961 13 C -0.539 4.539 14 H 0.052 0.948 15 C 0.012 3.988 16 N -0.923 5.923 17 Si 0.950 3.050 18 H -0.270 1.270 19 H -0.271 1.271 20 H -0.284 1.284 21 C 0.038 3.962 22 H 0.060 0.940 23 H 0.065 0.935 24 H 0.051 0.949 25 H 0.047 0.953 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.061 0.939 31 H 0.025 0.975 32 H 0.035 0.965 33 H 0.112 0.888 34 H 0.038 0.962 35 H -0.001 1.001 36 H 0.264 0.736 37 H 0.046 0.954 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.219 15.799 3.192 19.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.068 4.068 3 C -0.192 4.192 4 C -0.150 4.150 5 C -0.104 4.104 6 N -0.237 5.237 7 C -0.068 4.068 8 C -0.002 4.002 9 H 0.137 0.863 10 C -0.060 4.060 11 N -0.183 5.183 12 C 0.000 4.000 13 C -0.577 4.577 14 H 0.071 0.929 15 C -0.187 4.187 16 N -0.563 5.563 17 Si 0.775 3.225 18 H -0.195 1.195 19 H -0.197 1.197 20 H -0.210 1.210 21 C -0.089 4.089 22 H 0.079 0.921 23 H 0.084 0.916 24 H 0.070 0.930 25 H 0.066 0.934 26 H 0.087 0.913 27 H 0.084 0.916 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.080 0.920 31 H 0.044 0.956 32 H 0.054 0.946 33 H 0.130 0.870 34 H 0.056 0.944 35 H 0.018 0.982 36 H 0.073 0.927 37 H 0.064 0.936 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -9.902 15.376 4.624 18.864 hybrid contribution 1.226 -0.933 -0.245 1.560 sum -8.676 14.444 4.379 17.409 Atomic orbital electron populations 1.21787 0.92721 1.01873 1.02230 1.21315 0.96934 0.95194 0.93334 1.21860 1.00323 0.94256 1.02797 1.22467 0.99408 0.95501 0.97647 1.23276 0.96251 0.99062 0.91762 1.65428 1.40202 1.16276 1.01758 1.22282 0.94651 0.91105 0.98752 1.19200 1.00193 0.97565 0.83271 0.86264 1.29519 0.91665 0.90222 0.94556 1.81019 1.11501 1.11663 1.14152 1.18987 0.93581 0.93132 0.94254 1.21565 1.29001 0.94493 1.12666 0.92928 1.25708 0.95035 1.02953 0.94974 1.70038 1.31338 1.36196 1.18765 0.85625 0.77714 0.80603 0.78532 1.19456 1.19659 1.21041 1.23358 1.00439 0.87211 0.97939 0.92093 0.91579 0.92999 0.93361 0.91328 0.91618 0.90877 0.90849 0.92046 0.95623 0.94643 0.86990 0.94413 0.98250 0.92664 0.93592 0.88641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.08 8.23 71.98 0.59 -1.48 16 2 C -0.07 -1.24 1.03 -51.29 -0.05 -1.29 16 3 C -0.13 -2.02 8.25 71.98 0.59 -1.43 16 4 C -0.11 -2.50 6.29 31.49 0.20 -2.30 16 5 C 0.02 0.72 4.72 86.45 0.41 1.13 16 6 N -0.51 -14.02 5.37 -881.48 -4.73 -18.75 16 7 C 0.06 1.86 4.49 86.30 0.39 2.25 16 8 C 0.02 0.74 2.42 -12.60 -0.03 0.71 16 9 H 0.12 4.30 8.14 -2.39 -0.02 4.28 16 10 C 0.26 10.70 10.65 89.44 0.95 11.65 16 11 N -0.51 -22.52 17.70 20.01 0.35 -22.16 16 12 C 0.04 1.85 4.42 29.85 0.13 1.99 16 13 C -0.54 -29.11 8.60 25.60 0.22 -28.89 16 14 H 0.05 2.83 7.59 -2.91 -0.02 2.81 16 15 C 0.01 0.68 5.46 84.65 0.46 1.14 16 16 N -0.92 -53.44 13.29 21.44 0.28 -53.15 16 17 Si 0.95 43.88 29.54 68.60 2.03 45.91 16 18 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 19 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 20 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 21 C 0.04 0.81 5.58 86.45 0.48 1.29 16 22 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 23 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.05 0.78 8.12 -2.39 -0.02 0.76 16 26 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.07 1.59 7.71 -2.39 -0.02 1.57 16 29 H 0.07 1.51 7.72 -2.39 -0.02 1.49 16 30 H 0.06 2.07 5.80 -2.39 -0.01 2.05 16 31 H 0.03 0.81 7.71 -2.39 -0.02 0.79 16 32 H 0.04 1.11 7.88 -2.39 -0.02 1.09 16 33 H 0.11 2.98 8.13 -2.39 -0.02 2.97 16 34 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 36 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 37 H 0.05 0.97 7.70 -2.39 -0.02 0.96 16 38 H 0.10 1.80 7.86 -2.39 -0.02 1.79 16 Total: -1.00 -61.58 307.01 3.28 -58.29 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: 1.01 Total: 5.10 kcal Atomic # 6 Polarization: -19.58 SS G_CDS: 4.35 Total: -15.24 kcal Atomic # 7 Polarization: -89.97 SS G_CDS: -4.10 Total: -94.06 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -61.58 3.28 -58.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174254792.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.693 kcal (2) G-P(sol) polarization free energy of solvation -61.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds