Wall clock time and date at job start Sun Mar 29 2020 21:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35966 * 126.06861 * 2 1 4 4 C 1.35707 * 107.55146 * 180.02562 * 3 2 1 5 5 N 1.40796 * 126.06725 * 179.97438 * 4 3 2 6 6 C 1.46901 * 110.99858 * 304.30074 * 5 4 3 7 7 C 1.53238 * 109.34241 * 172.75045 * 6 5 4 8 8 N 1.47083 * 108.51930 * 53.82499 * 7 6 5 9 9 C 1.36941 * 120.87445 * 128.84166 * 8 7 6 10 10 H 1.08003 * 119.99521 * 206.61895 * 9 8 7 11 11 C 1.38808 * 120.00118 * 26.62755 * 9 8 7 12 12 N 1.31618 * 120.00436 * 17.03555 * 11 9 8 13 13 Si 1.86807 * 119.99729 * 197.03880 * 11 9 8 14 14 H 1.48499 * 109.46935 * 89.99577 * 13 11 9 15 15 H 1.48498 * 109.47175 * 209.99921 * 13 11 9 16 16 H 1.48504 * 109.47109 * 329.99928 * 13 11 9 17 17 C 1.47075 * 118.24286 * 308.81676 * 8 7 6 18 18 C 1.46901 * 110.99890 * 179.97438 * 5 4 3 19 19 C 1.40222 * 107.86590 * 0.22843 * 4 3 2 20 20 N 1.30873 * 108.35996 * 359.61167 * 19 4 3 21 21 H 1.09000 * 109.47105 * 90.00119 * 1 2 3 22 22 H 1.09003 * 109.47040 * 209.99731 * 1 2 3 23 23 H 1.08994 * 109.47457 * 330.00148 * 1 2 3 24 24 H 1.08001 * 126.22689 * 0.04504 * 3 2 1 25 25 H 1.09001 * 109.49150 * 292.70644 * 6 5 4 26 26 H 1.09000 * 109.49215 * 52.78725 * 6 5 4 27 27 H 1.09002 * 109.62619 * 294.12227 * 7 6 5 28 28 H 1.08994 * 109.79519 * 173.63089 * 7 6 5 29 29 H 0.96995 * 119.99704 * 180.02562 * 12 11 9 30 30 H 1.08996 * 109.63007 * 291.48181 * 17 8 7 31 31 H 1.08993 * 109.79147 * 170.98599 * 17 8 7 32 32 H 1.08994 * 109.49518 * 307.21278 * 18 5 4 33 33 H 1.09002 * 109.49242 * 67.26492 * 18 5 4 34 34 H 1.07994 * 125.81785 * 179.75336 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2655 1.0990 0.0000 4 6 3.5523 0.6680 -0.0006 5 7 4.6998 1.4840 -0.0013 6 6 4.6803 2.4187 -1.1344 7 6 5.8457 3.4045 -0.9991 8 7 7.0913 2.6373 -0.8470 9 6 8.1772 2.8959 -1.6402 10 1 8.8961 2.1157 -1.8426 11 6 8.3542 4.1608 -2.1839 12 7 7.6954 5.1875 -1.6899 13 14 9.5273 4.4057 -3.6169 14 1 8.7912 4.2309 -4.8946 15 1 10.1005 5.7743 -3.5590 16 1 10.6228 3.4063 -3.5361 17 6 7.1399 1.5856 0.1799 18 6 5.9235 0.6713 -0.0012 19 6 3.5364 -0.7341 -0.0063 20 7 2.2897 -1.1322 -0.0006 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3634 0.8899 0.5138 24 1 1.9371 2.1279 0.0007 25 1 4.7808 1.8625 -2.0664 26 1 3.7384 2.9672 -1.1373 27 1 5.6934 4.0332 -0.1218 28 1 5.9066 4.0285 -1.8907 29 1 7.8188 6.0713 -2.0701 30 1 7.1120 2.0394 1.1705 31 1 8.0549 1.0038 0.0693 32 1 5.8830 -0.0471 0.8175 33 1 6.0066 0.1388 -0.9486 34 1 4.4048 -1.3760 -0.0118 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174902926.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:46 Heat of formation + Delta-G solvation = 97.570382 kcal Electronic energy + Delta-G solvation = -16814.450018 eV Core-core repulsion = 14170.375438 eV Total energy + Delta-G solvation = -2644.074581 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.14417 -39.39612 -36.17863 -33.87465 -33.12759 -31.66919 -30.45042 -28.28686 -26.72324 -24.79918 -24.43787 -21.80397 -21.44965 -20.55153 -18.89258 -18.07886 -16.78685 -16.34461 -16.06614 -15.64440 -15.50938 -15.31217 -15.07866 -14.92371 -14.40506 -13.67434 -13.42693 -13.37187 -13.17854 -12.97189 -12.60411 -12.37750 -12.17472 -11.97921 -11.87067 -11.58080 -11.44770 -10.60667 -10.51497 -10.25938 -8.71925 -8.41804 -7.86506 -5.30949 0.89908 1.48570 1.49786 1.58717 1.66442 1.79604 2.52372 3.04495 3.29379 3.68392 3.82050 3.97356 4.30839 4.32071 4.37165 4.48445 4.49321 4.60424 4.66790 4.72632 4.74268 4.84656 4.92849 5.01442 5.20908 5.35916 5.43290 5.63531 5.69339 6.05532 6.19401 6.38686 6.52027 6.71936 7.14616 7.84577 8.39053 9.20770 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.050390 B = 0.005660 C = 0.005421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.530941 B = 4945.990149 C = 5163.903743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.378 5.378 3 C 0.033 3.967 4 C -0.060 4.060 5 N -0.465 5.465 6 C 0.058 3.942 7 C 0.184 3.816 8 N -0.614 5.614 9 C -0.265 4.265 10 H 0.069 0.931 11 C -0.049 4.049 12 N -0.935 5.935 13 Si 0.968 3.032 14 H -0.286 1.286 15 H -0.294 1.294 16 H -0.269 1.269 17 C 0.144 3.856 18 C 0.057 3.943 19 C 0.014 3.986 20 N -0.313 5.313 21 H 0.085 0.915 22 H 0.093 0.907 23 H 0.112 0.888 24 H 0.197 0.803 25 H 0.018 0.982 26 H 0.084 0.916 27 H 0.003 0.997 28 H 0.061 0.939 29 H 0.251 0.749 30 H 0.018 0.982 31 H 0.066 0.934 32 H 0.094 0.906 33 H 0.031 0.969 34 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.306 -8.879 2.657 16.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.163 5.163 3 C -0.115 4.115 4 C -0.166 4.166 5 N -0.184 5.184 6 C -0.070 4.070 7 C 0.058 3.942 8 N -0.338 5.338 9 C -0.395 4.395 10 H 0.086 0.914 11 C -0.245 4.245 12 N -0.582 5.582 13 Si 0.796 3.204 14 H -0.213 1.213 15 H -0.221 1.221 16 H -0.193 1.193 17 C 0.018 3.982 18 C -0.072 4.072 19 C -0.173 4.173 20 N -0.136 5.136 21 H 0.103 0.897 22 H 0.112 0.888 23 H 0.130 0.870 24 H 0.213 0.787 25 H 0.036 0.964 26 H 0.102 0.898 27 H 0.021 0.979 28 H 0.079 0.921 29 H 0.060 0.940 30 H 0.036 0.964 31 H 0.085 0.915 32 H 0.112 0.888 33 H 0.050 0.950 34 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -14.190 -9.422 3.043 17.303 hybrid contribution 1.352 0.818 -1.284 2.036 sum -12.838 -8.604 1.758 15.554 Atomic orbital electron populations 1.22168 0.71508 1.05946 1.04516 1.48776 1.07695 1.02651 1.57224 1.22383 0.89550 0.94193 1.05332 1.19388 0.91644 0.91449 1.14139 1.59434 1.00168 1.17281 1.41476 1.22705 0.99859 0.94473 0.89992 1.20662 0.83247 0.91342 0.98921 1.44401 1.10624 1.40114 1.38681 1.19561 1.02920 0.94264 1.22720 0.91356 1.25767 1.01055 0.94858 1.02780 1.70179 1.46927 0.98880 1.42168 0.85260 0.78816 0.76758 0.79570 1.21264 1.22086 1.19341 1.21136 0.96017 0.89953 0.91072 1.22526 0.89148 0.95046 1.00438 1.24166 0.95834 0.94455 1.02843 1.77137 1.01687 1.09954 1.24839 0.89701 0.88809 0.86962 0.78661 0.96382 0.89782 0.97937 0.92106 0.94020 0.96417 0.91544 0.88750 0.95021 0.79181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.30 11.48 127.77 1.47 2.76 16 2 N -0.38 -9.16 4.04 -368.39 -1.49 -10.65 16 3 C 0.03 0.86 10.81 83.47 0.90 1.76 16 4 C -0.06 -1.90 5.75 37.59 0.22 -1.68 16 5 N -0.46 -16.84 4.74 -694.95 -3.30 -20.13 16 6 C 0.06 2.27 5.50 86.38 0.48 2.75 16 7 C 0.18 9.11 5.42 86.35 0.47 9.58 16 8 N -0.61 -31.63 3.04 -698.16 -2.12 -33.75 16 9 C -0.26 -14.73 9.63 84.03 0.81 -13.92 16 10 H 0.07 3.69 7.88 -2.91 -0.02 3.67 16 11 C -0.05 -2.76 4.93 84.86 0.42 -2.35 16 12 N -0.94 -55.52 11.15 21.65 0.24 -55.28 16 13 Si 0.97 44.97 29.59 68.60 2.03 47.00 16 14 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 15 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 16 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 17 C 0.14 6.13 6.69 86.35 0.58 6.70 16 18 C 0.06 2.02 4.59 86.38 0.40 2.42 16 19 C 0.01 0.41 10.80 85.32 0.92 1.33 16 20 N -0.31 -9.18 12.57 -56.77 -0.71 -9.89 16 21 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 22 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 23 H 0.11 0.88 8.14 -2.39 -0.02 0.87 16 24 H 0.20 4.09 7.85 -2.91 -0.02 4.06 16 25 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.08 2.87 7.37 -2.39 -0.02 2.85 16 27 H 0.00 0.13 8.14 -2.39 -0.02 0.12 16 28 H 0.06 3.34 6.11 -2.39 -0.01 3.33 16 29 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 30 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.07 2.67 7.96 -2.39 -0.02 2.65 16 32 H 0.09 2.81 7.38 -2.39 -0.02 2.79 16 33 H 0.03 1.15 8.13 -2.39 -0.02 1.13 16 34 H 0.19 4.91 7.21 -2.91 -0.02 4.89 16 Total: -1.00 -68.91 279.12 2.38 -66.53 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: 1.08 Total: 6.82 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: 6.65 Total: 9.36 kcal Atomic # 7 Polarization: -122.33 SS G_CDS: -7.38 Total: -129.70 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -68.91 2.38 -66.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174902926.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.097 kcal (2) G-P(sol) polarization free energy of solvation -68.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds