Wall clock time and date at job start Sun Mar 29 2020 22:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00606 * 2 1 4 4 H 1.48502 * 109.46980 * 269.99678 * 3 2 1 5 5 H 1.48498 * 109.46783 * 29.99377 * 3 2 1 6 6 H 1.48498 * 109.47365 * 149.99489 * 3 2 1 7 7 C 1.37884 * 119.99765 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00054 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99935 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.47407 * 179.97438 * 9 7 2 11 11 C 1.34779 * 120.00490 * 179.97438 * 10 9 7 12 12 O 1.21624 * 119.99700 * 0.02562 * 11 10 9 13 13 C 1.47295 * 120.00049 * 179.97438 * 11 10 9 14 14 C 1.39852 * 120.13867 * 0.02562 * 13 11 10 15 15 C 1.37541 * 119.96811 * 179.97438 * 14 13 11 16 16 C 1.39187 * 120.23709 * 359.97438 * 15 14 13 17 17 O 1.35716 * 119.86400 * 180.02562 * 16 15 14 18 18 C 1.38684 * 120.27544 * 0.04369 * 16 15 14 19 19 C 1.38440 * 120.02913 * 359.95772 * 18 16 15 20 20 O 1.35668 * 120.11650 * 180.29102 * 19 18 16 21 21 H 0.97004 * 119.99235 * 0.02562 * 1 2 3 22 22 H 1.08994 * 109.47406 * 59.99645 * 9 7 2 23 23 H 1.09006 * 109.47314 * 300.00068 * 9 7 2 24 24 H 0.96997 * 119.99766 * 359.97438 * 10 9 7 25 25 H 1.08001 * 120.01769 * 0.02562 * 14 13 11 26 26 H 1.07997 * 119.88419 * 180.02562 * 15 14 13 27 27 H 0.96707 * 114.00207 * 89.99732 * 17 16 15 28 28 H 1.07997 * 119.98332 * 179.97438 * 18 16 15 29 29 H 0.96693 * 114.00097 * 269.72598 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4969 2.0462 -1.4001 5 1 1.4468 2.6526 0.6999 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2029 -3.6128 0.0005 11 6 1.7536 -4.8835 0.0011 12 8 0.5578 -5.1056 0.0011 13 6 2.7107 -6.0031 0.0005 14 6 4.0863 -5.7509 -0.0001 15 6 4.9769 -6.7990 -0.0001 16 6 4.5145 -8.1118 0.0010 17 8 5.4000 -9.1402 0.0015 18 6 3.1525 -8.3733 0.0012 19 6 2.2461 -7.3269 0.0012 20 8 0.9134 -7.5806 0.0073 21 1 -0.4849 0.8401 -0.0004 22 1 0.6246 -2.5571 -0.8896 23 1 0.6239 -2.5567 0.8903 24 1 3.1565 -3.4356 0.0002 25 1 4.4491 -4.7336 0.0004 26 1 6.0389 -6.6027 -0.0001 27 1 5.6570 -9.4376 0.8851 28 1 2.7989 -9.3937 0.0016 29 1 0.5228 -7.6531 -0.8743 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226406611.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:29 Heat of formation + Delta-G solvation = -99.513892 kcal Electronic energy + Delta-G solvation = -15962.335484 eV Core-core repulsion = 13043.870180 eV Total energy + Delta-G solvation = -2918.465304 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.083 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.32992 -38.58862 -37.49412 -35.75337 -34.16443 -32.38182 -30.53532 -29.68879 -27.11100 -23.79248 -22.90987 -22.04967 -19.95535 -19.07703 -17.87084 -17.25619 -16.35885 -15.98358 -15.20259 -14.97007 -14.82219 -14.54763 -14.11719 -13.91308 -13.24133 -12.81737 -12.51979 -12.06623 -11.94557 -11.59478 -10.99901 -10.90125 -10.87380 -10.72035 -10.32726 -9.41759 -9.10061 -9.01475 -8.75772 -8.63967 -7.88030 -6.18224 -4.25376 0.73643 1.13636 3.03936 3.23222 3.29307 3.31671 3.80864 3.95514 4.02957 4.34889 4.41468 4.72200 4.92728 5.17697 5.17991 5.38909 5.54357 5.72606 6.06522 6.18540 6.24096 6.44852 7.28914 7.37529 7.39100 7.49937 7.63985 7.77342 7.94832 8.58223 8.75621 9.05434 9.41137 10.91985 Molecular weight = 237.08amu Principal moments of inertia in cm(-1) A = 0.040966 B = 0.005244 C = 0.004664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.328422 B = 5338.616299 C = 6001.745714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.545 4.545 8 H 0.063 0.937 9 C 0.250 3.750 10 N -0.707 5.707 11 C 0.538 3.462 12 O -0.537 6.537 13 C -0.161 4.161 14 C -0.057 4.057 15 C -0.163 4.163 16 C 0.136 3.864 17 O -0.498 6.498 18 C -0.187 4.187 19 C 0.180 3.820 20 O -0.475 6.475 21 H 0.266 0.734 22 H 0.028 0.972 23 H 0.029 0.971 24 H 0.389 0.611 25 H 0.138 0.862 26 H 0.135 0.865 27 H 0.393 0.607 28 H 0.138 0.862 29 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.453 -14.569 -0.007 17.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.583 4.583 8 H 0.081 0.919 9 C 0.129 3.871 10 N -0.356 5.356 11 C 0.323 3.677 12 O -0.416 6.416 13 C -0.164 4.164 14 C -0.076 4.076 15 C -0.182 4.182 16 C 0.091 3.909 17 O -0.309 6.309 18 C -0.206 4.206 19 C 0.133 3.867 20 O -0.286 6.286 21 H 0.076 0.924 22 H 0.046 0.954 23 H 0.047 0.953 24 H 0.222 0.778 25 H 0.156 0.844 26 H 0.153 0.847 27 H 0.250 0.750 28 H 0.156 0.844 29 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 9.409 -14.489 -0.008 17.276 hybrid contribution 0.907 0.934 0.015 1.302 sum 10.316 -13.556 0.007 17.035 Atomic orbital electron populations 1.69979 1.06112 1.27338 1.48765 1.24955 0.94925 0.99464 0.94657 0.86404 0.79615 0.82600 0.78229 1.20440 1.20981 1.19737 1.21214 0.93253 0.90427 1.53396 0.91898 1.19138 0.88260 0.81752 0.97902 1.46433 1.11143 1.05958 1.72046 1.17956 0.87982 0.83047 0.78672 1.90776 1.15775 1.84705 1.50317 1.20843 0.94357 0.94409 1.06831 1.21210 0.91411 0.99703 0.95241 1.21334 1.00707 0.91550 1.04560 1.18394 0.87669 0.86871 0.97979 1.84754 1.62054 1.50357 1.33750 1.21624 0.92382 1.00003 1.06556 1.18259 0.84181 0.89801 0.94454 1.84740 1.17286 1.92956 1.33581 0.92409 0.95362 0.95320 0.77768 0.84393 0.84710 0.75017 0.84434 0.74532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.03 13.29 55.43 0.74 -25.30 15 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 15 3 Si 0.90 20.75 29.54 -169.99 -5.02 15.73 15 4 H -0.28 -6.30 7.11 56.52 0.40 -5.90 15 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 6 H -0.27 -6.06 7.11 56.52 0.40 -5.66 15 7 C -0.54 -14.74 9.28 -34.44 -0.32 -15.06 15 8 H 0.06 1.58 7.60 -52.49 -0.40 1.18 15 9 C 0.25 6.66 5.43 -5.20 -0.03 6.63 15 10 N -0.71 -15.16 5.50 -62.61 -0.34 -15.51 15 11 C 0.54 11.27 7.76 -12.58 -0.10 11.18 15 12 O -0.54 -13.16 15.15 -16.67 -0.25 -13.41 15 13 C -0.16 -2.62 5.89 -104.84 -0.62 -3.24 15 14 C -0.06 -0.74 9.52 -39.23 -0.37 -1.11 15 15 C -0.16 -1.80 9.96 -39.48 -0.39 -2.20 15 16 C 0.14 1.51 6.70 -39.06 -0.26 1.25 15 17 O -0.50 -4.55 13.48 -18.85 -0.25 -4.81 15 18 C -0.19 -2.26 9.91 -39.34 -0.39 -2.65 15 19 C 0.18 2.69 6.71 -38.73 -0.26 2.43 15 20 O -0.47 -7.39 11.56 -40.63 -0.47 -7.86 15 21 H 0.27 7.33 8.31 -40.82 -0.34 7.00 15 22 H 0.03 0.83 8.14 -51.93 -0.42 0.40 15 23 H 0.03 0.85 8.14 -51.93 -0.42 0.42 15 24 H 0.39 7.07 6.34 -40.82 -0.26 6.81 15 25 H 0.14 1.58 6.39 -52.49 -0.34 1.25 15 26 H 0.14 1.17 8.06 -52.49 -0.42 0.75 15 27 H 0.39 1.64 9.06 45.56 0.41 2.06 15 28 H 0.14 1.42 8.06 -52.49 -0.42 1.00 15 29 H 0.40 4.62 9.06 45.56 0.41 5.04 15 LS Contribution 265.62 15.07 4.00 4.00 Total: -1.00 -34.57 265.62 -5.43 -40.00 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -0.99 Total: 8.25 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: -2.84 Total: -1.10 kcal Atomic # 7 Polarization: -41.20 SS G_CDS: 0.39 Total: -40.81 kcal Atomic # 8 Polarization: -25.10 SS G_CDS: -0.98 Total: -26.07 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -34.57 -5.43 -40.00 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226406611.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.511 kcal (2) G-P(sol) polarization free energy of solvation -34.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds