Wall clock time and date at job start Sun Mar 29 2020 22:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00606 * 2 1 4 4 H 1.48502 * 109.46980 * 269.99678 * 3 2 1 5 5 H 1.48498 * 109.46783 * 29.99377 * 3 2 1 6 6 H 1.48498 * 109.47365 * 149.99489 * 3 2 1 7 7 C 1.37884 * 119.99765 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00054 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99935 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.47407 * 179.97438 * 9 7 2 11 11 C 1.34779 * 120.00490 * 179.97438 * 10 9 7 12 12 O 1.21624 * 119.99700 * 0.02562 * 11 10 9 13 13 C 1.47295 * 120.00049 * 179.97438 * 11 10 9 14 14 C 1.39852 * 120.13867 * 0.02562 * 13 11 10 15 15 C 1.37541 * 119.96811 * 179.97438 * 14 13 11 16 16 C 1.39187 * 120.23709 * 359.97438 * 15 14 13 17 17 O 1.35716 * 119.86400 * 180.02562 * 16 15 14 18 18 C 1.38684 * 120.27544 * 0.04369 * 16 15 14 19 19 C 1.38440 * 120.02913 * 359.95772 * 18 16 15 20 20 O 1.35668 * 120.11650 * 180.29102 * 19 18 16 21 21 H 0.97004 * 119.99235 * 0.02562 * 1 2 3 22 22 H 1.08994 * 109.47406 * 59.99645 * 9 7 2 23 23 H 1.09006 * 109.47314 * 300.00068 * 9 7 2 24 24 H 0.96997 * 119.99766 * 359.97438 * 10 9 7 25 25 H 1.08001 * 120.01769 * 0.02562 * 14 13 11 26 26 H 1.07997 * 119.88419 * 180.02562 * 15 14 13 27 27 H 0.96707 * 114.00207 * 89.99732 * 17 16 15 28 28 H 1.07997 * 119.98332 * 179.97438 * 18 16 15 29 29 H 0.96693 * 114.00097 * 269.72598 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4969 2.0462 -1.4001 5 1 1.4468 2.6526 0.6999 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2029 -3.6128 0.0005 11 6 1.7536 -4.8835 0.0011 12 8 0.5578 -5.1056 0.0011 13 6 2.7107 -6.0031 0.0005 14 6 4.0863 -5.7509 -0.0001 15 6 4.9769 -6.7990 -0.0001 16 6 4.5145 -8.1118 0.0010 17 8 5.4000 -9.1402 0.0015 18 6 3.1525 -8.3733 0.0012 19 6 2.2461 -7.3269 0.0012 20 8 0.9134 -7.5806 0.0073 21 1 -0.4849 0.8401 -0.0004 22 1 0.6246 -2.5571 -0.8896 23 1 0.6239 -2.5567 0.8903 24 1 3.1565 -3.4356 0.0002 25 1 4.4491 -4.7336 0.0004 26 1 6.0389 -6.6027 -0.0001 27 1 5.6570 -9.4376 0.8851 28 1 2.7989 -9.3937 0.0016 29 1 0.5228 -7.6531 -0.8743 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226406611.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:28 Heat of formation + Delta-G solvation = -128.331114 kcal Electronic energy + Delta-G solvation = -15963.585093 eV Core-core repulsion = 13043.870180 eV Total energy + Delta-G solvation = -2919.714912 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.083 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.50724 -39.91942 -38.65436 -36.79393 -36.09588 -34.36271 -31.67148 -30.82126 -29.02819 -25.35729 -24.19388 -23.41243 -21.57129 -20.06270 -19.42309 -18.25634 -17.90630 -17.53949 -16.67484 -16.27611 -16.15046 -16.01058 -15.66365 -15.24190 -14.52193 -14.08905 -13.98634 -13.97116 -13.52307 -12.92655 -12.81502 -12.69405 -12.23201 -11.87409 -11.68505 -11.49402 -10.81300 -10.78678 -10.03773 -9.91085 -9.58414 -8.29864 -6.46940 -0.34281 0.17344 1.43343 1.46067 1.57262 1.81243 2.29470 2.51695 2.65104 2.93919 3.05218 3.43790 3.76750 3.86518 4.07875 4.32025 4.56955 4.80040 5.01446 5.13351 5.21085 5.21624 5.25980 5.45097 5.56273 5.66984 5.82547 6.62876 6.73637 6.80946 6.85704 7.21518 7.42102 8.82500 Molecular weight = 237.08amu Principal moments of inertia in cm(-1) A = 0.040966 B = 0.005244 C = 0.004664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.328422 B = 5338.616299 C = 6001.745714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.987 3.013 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.254 1.254 7 C -0.557 4.557 8 H 0.086 0.914 9 C 0.267 3.733 10 N -0.702 5.702 11 C 0.536 3.464 12 O -0.584 6.584 13 C -0.194 4.194 14 C -0.049 4.049 15 C -0.155 4.155 16 C 0.159 3.841 17 O -0.499 6.499 18 C -0.186 4.186 19 C 0.168 3.832 20 O -0.496 6.496 21 H 0.269 0.731 22 H -0.010 1.010 23 H -0.013 1.013 24 H 0.406 0.594 25 H 0.152 0.848 26 H 0.169 0.831 27 H 0.420 0.580 28 H 0.156 0.844 29 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.053 -15.168 0.050 20.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.196 4.196 3 Si 0.810 3.190 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.178 1.178 7 C -0.595 4.595 8 H 0.104 0.896 9 C 0.145 3.855 10 N -0.353 5.353 11 C 0.325 3.675 12 O -0.467 6.467 13 C -0.198 4.198 14 C -0.068 4.068 15 C -0.173 4.173 16 C 0.114 3.886 17 O -0.314 6.314 18 C -0.205 4.205 19 C 0.122 3.878 20 O -0.309 6.309 21 H 0.078 0.922 22 H 0.008 0.992 23 H 0.005 0.995 24 H 0.243 0.757 25 H 0.169 0.831 26 H 0.186 0.814 27 H 0.281 0.719 28 H 0.174 0.826 29 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 13.071 -15.132 0.061 19.996 hybrid contribution -0.154 0.924 -0.001 0.937 sum 12.917 -14.208 0.060 19.202 Atomic orbital electron populations 1.70147 1.08332 1.28615 1.49847 1.26095 0.95795 1.03978 0.93766 0.85128 0.78502 0.76771 0.78647 1.19514 1.21005 1.17764 1.21611 0.94371 0.90424 1.53095 0.89639 1.18575 0.88637 0.84116 0.94208 1.46126 1.11234 1.05269 1.72654 1.18714 0.88329 0.83724 0.76775 1.90733 1.18207 1.85418 1.52301 1.20509 0.94773 0.92929 1.11569 1.21349 0.90001 1.01226 0.94248 1.21624 1.01912 0.90745 1.03040 1.18450 0.87469 0.87543 0.95146 1.84699 1.61172 1.49511 1.35999 1.21737 0.92542 0.99968 1.06221 1.18494 0.84262 0.90096 0.94964 1.84687 1.18320 1.93008 1.34902 0.92213 0.99220 0.99464 0.75683 0.83069 0.81402 0.71906 0.82604 0.73261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.53 13.29 21.45 0.28 -56.25 15 2 C 0.00 0.18 5.46 84.66 0.46 0.65 15 3 Si 0.99 42.21 29.54 68.60 2.03 44.24 15 4 H -0.27 -11.12 7.11 99.48 0.71 -10.42 15 5 H -0.28 -12.09 7.11 99.48 0.71 -11.39 15 6 H -0.25 -10.04 7.11 99.48 0.71 -9.33 15 7 C -0.56 -30.51 9.28 25.60 0.24 -30.27 15 8 H 0.09 4.18 7.60 -2.91 -0.02 4.16 15 9 C 0.27 15.01 5.43 85.63 0.46 15.47 15 10 N -0.70 -31.09 5.50 -470.23 -2.59 -33.68 15 11 C 0.54 23.40 7.76 86.62 0.67 24.07 15 12 O -0.58 -30.54 15.15 16.86 0.26 -30.28 15 13 C -0.19 -6.30 5.89 -20.00 -0.12 -6.42 15 14 C -0.05 -1.18 9.52 22.50 0.21 -0.96 15 15 C -0.16 -2.79 9.96 22.33 0.22 -2.57 15 16 C 0.16 2.91 6.70 22.60 0.15 3.06 15 17 O -0.50 -6.67 13.48 -90.37 -1.22 -7.89 15 18 C -0.19 -4.05 9.91 22.42 0.22 -3.83 15 19 C 0.17 4.98 6.71 22.82 0.15 5.13 15 20 O -0.50 -15.93 11.56 -68.88 -0.80 -16.72 15 21 H 0.27 15.22 8.31 -92.71 -0.77 14.45 15 22 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 15 23 H -0.01 -0.80 8.14 -2.38 -0.02 -0.82 15 24 H 0.41 14.68 6.34 -92.71 -0.59 14.09 15 25 H 0.15 3.08 6.39 -2.91 -0.02 3.07 15 26 H 0.17 1.97 8.06 -2.91 -0.02 1.94 15 27 H 0.42 1.32 9.06 -74.05 -0.67 0.65 15 28 H 0.16 2.78 8.06 -2.91 -0.02 2.75 15 29 H 0.41 10.11 9.06 -74.06 -0.67 9.44 15 Total: -1.00 -78.25 265.62 -0.06 -78.30 By element: Atomic # 1 Polarization: 18.66 SS G_CDS: -0.71 Total: 17.95 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: 2.68 Total: 4.33 kcal Atomic # 7 Polarization: -87.62 SS G_CDS: -2.30 Total: -89.92 kcal Atomic # 8 Polarization: -53.14 SS G_CDS: -1.76 Total: -54.90 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Total: -78.25 -0.06 -78.30 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226406611.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.028 kcal (2) G-P(sol) polarization free energy of solvation -78.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds