Wall clock time and date at job start Sun Mar 29 2020 21:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.47205 * 109.52237 * 2 1 4 4 N 2.60801 * 109.52378 * 359.97438 * 2 1 3 5 5 C 1.53114 * 109.52307 * 239.86963 * 2 1 3 6 6 C 1.53037 * 109.31211 * 182.35784 * 5 2 1 7 7 N 1.46929 * 109.47910 * 59.15772 * 6 5 2 8 8 C 1.46900 * 110.98461 * 174.18240 * 7 6 5 9 9 C 1.53001 * 109.47047 * 294.22754 * 8 7 6 10 10 C 1.52997 * 109.47163 * 180.02562 * 9 8 7 11 11 C 1.50705 * 109.47359 * 180.02562 * 10 9 8 12 12 H 1.07994 * 119.99902 * 359.97438 * 11 10 9 13 13 C 1.37877 * 119.99827 * 180.02562 * 11 10 9 14 14 N 1.31509 * 120.00503 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 119.99586 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47192 * 89.99671 * 15 13 11 17 17 H 1.48502 * 109.46735 * 209.99749 * 15 13 11 18 18 H 1.48496 * 109.47115 * 329.99449 * 15 13 11 19 19 C 1.46850 * 111.22205 * 298.28247 * 7 6 5 20 20 C 1.53037 * 109.52028 * 61.74456 * 19 7 6 21 21 H 1.09000 * 109.47180 * 180.13210 * 1 2 3 22 22 H 1.09004 * 109.46959 * 300.12685 * 1 2 3 23 23 H 1.08999 * 109.47677 * 60.12902 * 1 2 3 24 24 H 1.09002 * 109.50377 * 302.31909 * 5 2 1 25 25 H 1.09003 * 109.50316 * 62.39904 * 5 2 1 26 26 H 1.08994 * 109.46612 * 179.21753 * 6 5 2 27 27 H 1.09007 * 109.46083 * 299.18512 * 6 5 2 28 28 H 1.09001 * 109.47343 * 54.22849 * 8 7 6 29 29 H 1.08999 * 109.47204 * 174.23004 * 8 7 6 30 30 H 1.09001 * 109.47127 * 300.00227 * 9 8 7 31 31 H 1.09000 * 109.47324 * 60.00420 * 9 8 7 32 32 H 1.09000 * 109.47401 * 300.00512 * 10 9 8 33 33 H 1.08999 * 109.47301 * 60.00120 * 10 9 8 34 34 H 0.96998 * 120.00336 * 180.02562 * 14 13 11 35 35 H 1.08997 * 109.46198 * 301.72747 * 19 7 6 36 36 H 1.08995 * 109.45893 * 181.75622 * 19 7 6 37 37 H 1.08997 * 109.50150 * 180.88044 * 20 19 7 38 38 H 1.08997 * 109.53578 * 60.77667 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0219 1.3874 0.0000 4 7 2.4016 2.4581 -0.0011 5 6 2.0417 -0.7244 -1.2481 6 6 3.5709 -0.7732 -1.2138 7 7 4.0115 -1.4766 -0.0014 8 6 5.4685 -1.6641 -0.0023 9 6 5.8606 -2.6079 -1.1409 10 6 7.3780 -2.8037 -1.1414 11 6 7.7643 -3.7328 -2.2633 12 1 7.0036 -4.1430 -2.9109 13 6 9.0888 -4.0600 -2.4623 14 7 10.0152 -3.5610 -1.6734 15 14 9.5677 -5.2111 -3.8534 16 1 9.8365 -4.4194 -5.0807 17 1 10.7892 -5.9654 -3.4734 18 1 8.4582 -6.1636 -4.1118 19 6 3.5722 -0.7734 1.2106 20 6 2.0430 -0.7247 1.2475 21 1 -0.3633 -1.0277 0.0024 22 1 -0.3633 0.5158 0.8889 23 1 -0.3634 0.5118 -0.8911 24 1 1.6455 -1.7397 -1.2677 25 1 1.7146 -0.1889 -2.1394 26 1 3.9373 -1.3006 -2.0944 27 1 3.9666 0.2425 -1.2082 28 1 5.9588 -0.7009 -0.1436 29 1 5.7800 -2.0942 0.9496 30 1 5.3704 -3.5711 -0.9996 31 1 5.5492 -2.1779 -2.0928 32 1 7.8686 -1.8407 -1.2824 33 1 7.6891 -3.2340 -0.1895 34 1 10.9470 -3.7909 -1.8136 35 1 3.9679 0.2422 1.2048 36 1 3.9401 -1.3014 2.0902 37 1 1.7175 -0.1891 2.1393 38 1 1.6464 -1.7397 1.2675 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227352714.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:14 Heat of formation + Delta-G solvation = 3.444534 kcal Electronic energy + Delta-G solvation = -16585.957050 eV Core-core repulsion = 14041.341210 eV Total energy + Delta-G solvation = -2544.615840 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.91566 -36.65394 -34.99474 -33.40064 -31.44525 -30.95788 -28.47440 -25.89036 -23.72753 -23.31877 -22.36296 -20.89036 -19.83620 -16.81168 -16.28363 -15.48108 -15.14079 -14.94453 -14.47204 -14.43319 -14.06690 -13.93141 -13.37454 -12.89693 -12.49857 -12.33081 -12.30772 -12.20982 -12.02931 -11.78507 -11.48301 -11.29834 -11.17022 -10.79120 -10.71802 -10.62185 -10.43255 -10.30743 -9.57373 -9.30973 -9.03285 -8.32239 -8.10578 -5.97426 -3.99527 2.65295 2.66814 3.33698 3.39828 3.43325 3.66547 4.09331 4.43926 4.48867 4.51759 4.62478 5.04826 5.22946 5.26316 5.36713 5.37350 5.38490 5.48126 5.58586 5.61189 5.76408 5.80586 5.81331 5.92704 5.96386 6.06896 6.12242 6.32831 6.71510 6.77280 7.13083 7.33804 7.36757 7.44628 7.70938 7.85846 8.03074 8.46185 9.07810 9.64448 11.14085 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.047179 B = 0.004307 C = 0.004228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.342339 B = 6500.041120 C = 6621.414155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.032 3.968 3 C 0.218 3.782 4 N -0.440 5.440 5 C -0.103 4.103 6 C 0.046 3.954 7 N -0.534 5.534 8 C 0.056 3.944 9 C -0.104 4.104 10 C 0.021 3.979 11 C -0.518 4.518 12 H 0.055 0.945 13 C 0.056 3.944 14 N -0.897 5.897 15 Si 0.891 3.109 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.273 1.273 19 C 0.048 3.952 20 C -0.102 4.102 21 H 0.079 0.921 22 H 0.063 0.937 23 H 0.063 0.937 24 H 0.095 0.905 25 H 0.073 0.927 26 H 0.091 0.909 27 H 0.027 0.973 28 H 0.027 0.973 29 H 0.071 0.929 30 H 0.057 0.943 31 H 0.047 0.953 32 H 0.013 0.987 33 H 0.016 0.984 34 H 0.260 0.740 35 H 0.027 0.973 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.202 4.600 4.704 20.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.028 3.972 3 C -0.100 4.100 4 N -0.115 5.115 5 C -0.142 4.142 6 C -0.082 4.082 7 N -0.258 5.258 8 C -0.071 4.071 9 C -0.142 4.142 10 C -0.017 4.017 11 C -0.556 4.556 12 H 0.073 0.927 13 C -0.145 4.145 14 N -0.536 5.536 15 Si 0.719 3.281 16 H -0.207 1.207 17 H -0.213 1.213 18 H -0.198 1.198 19 C -0.080 4.080 20 C -0.141 4.141 21 H 0.098 0.902 22 H 0.082 0.918 23 H 0.082 0.918 24 H 0.113 0.887 25 H 0.092 0.908 26 H 0.110 0.890 27 H 0.046 0.954 28 H 0.045 0.955 29 H 0.089 0.911 30 H 0.076 0.924 31 H 0.065 0.935 32 H 0.031 0.969 33 H 0.034 0.966 34 H 0.069 0.931 35 H 0.045 0.955 36 H 0.100 0.900 37 H 0.091 0.909 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -18.648 5.778 4.741 20.090 hybrid contribution 0.767 -0.089 -0.728 1.062 sum -17.881 5.688 4.013 19.188 Atomic orbital electron populations 1.21856 0.91356 1.03690 1.02813 1.18505 0.96417 0.83066 0.99195 1.29191 0.93060 0.94706 0.93082 1.81204 1.08989 1.12815 1.08486 1.21744 0.95996 1.01484 0.94967 1.22212 0.94336 0.96821 0.94841 1.62074 1.14491 1.48291 1.00995 1.22297 0.84605 0.98943 1.01286 1.21654 0.99753 0.97619 0.95171 1.19081 0.88722 0.96750 0.97140 1.21248 0.92284 1.27792 1.14289 0.92657 1.25028 0.96739 0.96369 0.96374 1.69964 1.00686 1.44710 1.38277 0.86604 0.78016 0.81011 0.82438 1.20732 1.21259 1.19823 1.22132 0.94698 0.96845 0.94357 1.21721 0.95808 1.01497 0.95053 0.90170 0.91839 0.91758 0.88678 0.90825 0.89035 0.95444 0.95464 0.91053 0.92442 0.93476 0.96912 0.96586 0.93053 0.95488 0.90041 0.90919 0.88704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.82 8.44 37.16 0.31 -0.51 16 2 C 0.03 0.28 0.72 -157.17 -0.11 0.16 16 3 C 0.22 2.61 11.60 -20.76 -0.24 2.37 16 4 N -0.44 -6.53 18.54 42.15 0.78 -5.75 16 5 C -0.10 -0.97 4.86 -26.65 -0.13 -1.10 16 6 C 0.05 0.60 5.09 -3.79 -0.02 0.58 16 7 N -0.53 -7.53 4.66 -234.60 -1.09 -8.62 16 8 C 0.06 0.96 4.96 -3.82 -0.02 0.94 16 9 C -0.10 -2.13 5.08 -26.73 -0.14 -2.27 16 10 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 11 C -0.52 -14.75 9.11 -34.44 -0.31 -15.07 16 12 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 13 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 14 N -0.90 -27.23 13.29 55.43 0.74 -26.50 16 15 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 16 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 17 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 18 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 19 C 0.05 0.57 5.25 -3.83 -0.02 0.55 16 20 C -0.10 -0.88 4.86 -26.65 -0.13 -1.01 16 21 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 22 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 23 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 24 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.09 1.28 6.22 -51.93 -0.32 0.96 16 27 H 0.03 0.40 7.32 -51.92 -0.38 0.02 16 28 H 0.03 0.50 8.12 -51.93 -0.42 0.07 16 29 H 0.07 1.22 7.99 -51.93 -0.41 0.80 16 30 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.05 0.95 6.43 -51.93 -0.33 0.61 16 32 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 35 H 0.03 0.36 7.31 -51.93 -0.38 -0.02 16 36 H 0.08 0.91 8.01 -51.93 -0.42 0.50 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 306.62 15.07 4.62 4.62 Total: -1.00 -31.85 306.62 -7.46 -39.31 By element: Atomic # 1 Polarization: 0.06 SS G_CDS: -6.44 Total: -6.38 kcal Atomic # 6 Polarization: -12.38 SS G_CDS: -1.04 Total: -13.43 kcal Atomic # 7 Polarization: -41.29 SS G_CDS: 0.43 Total: -40.86 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.85 -7.46 -39.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227352714.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.751 kcal (2) G-P(sol) polarization free energy of solvation -31.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds