Wall clock time and date at job start Sun Mar 29 2020 21:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.47205 * 109.52237 * 2 1 4 4 N 2.60801 * 109.52378 * 359.97438 * 2 1 3 5 5 C 1.53114 * 109.52307 * 239.86963 * 2 1 3 6 6 C 1.53037 * 109.31211 * 182.35784 * 5 2 1 7 7 N 1.46929 * 109.47910 * 59.15772 * 6 5 2 8 8 C 1.46900 * 110.98461 * 174.18240 * 7 6 5 9 9 C 1.53001 * 109.47047 * 294.22754 * 8 7 6 10 10 C 1.52997 * 109.47163 * 180.02562 * 9 8 7 11 11 C 1.50705 * 109.47359 * 180.02562 * 10 9 8 12 12 H 1.07994 * 119.99902 * 359.97438 * 11 10 9 13 13 C 1.37877 * 119.99827 * 180.02562 * 11 10 9 14 14 N 1.31509 * 120.00503 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 119.99586 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47192 * 89.99671 * 15 13 11 17 17 H 1.48502 * 109.46735 * 209.99749 * 15 13 11 18 18 H 1.48496 * 109.47115 * 329.99449 * 15 13 11 19 19 C 1.46850 * 111.22205 * 298.28247 * 7 6 5 20 20 C 1.53037 * 109.52028 * 61.74456 * 19 7 6 21 21 H 1.09000 * 109.47180 * 180.13210 * 1 2 3 22 22 H 1.09004 * 109.46959 * 300.12685 * 1 2 3 23 23 H 1.08999 * 109.47677 * 60.12902 * 1 2 3 24 24 H 1.09002 * 109.50377 * 302.31909 * 5 2 1 25 25 H 1.09003 * 109.50316 * 62.39904 * 5 2 1 26 26 H 1.08994 * 109.46612 * 179.21753 * 6 5 2 27 27 H 1.09007 * 109.46083 * 299.18512 * 6 5 2 28 28 H 1.09001 * 109.47343 * 54.22849 * 8 7 6 29 29 H 1.08999 * 109.47204 * 174.23004 * 8 7 6 30 30 H 1.09001 * 109.47127 * 300.00227 * 9 8 7 31 31 H 1.09000 * 109.47324 * 60.00420 * 9 8 7 32 32 H 1.09000 * 109.47401 * 300.00512 * 10 9 8 33 33 H 1.08999 * 109.47301 * 60.00120 * 10 9 8 34 34 H 0.96998 * 120.00336 * 180.02562 * 14 13 11 35 35 H 1.08997 * 109.46198 * 301.72747 * 19 7 6 36 36 H 1.08995 * 109.45893 * 181.75622 * 19 7 6 37 37 H 1.08997 * 109.50150 * 180.88044 * 20 19 7 38 38 H 1.08997 * 109.53578 * 60.77667 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0219 1.3874 0.0000 4 7 2.4016 2.4581 -0.0011 5 6 2.0417 -0.7244 -1.2481 6 6 3.5709 -0.7732 -1.2138 7 7 4.0115 -1.4766 -0.0014 8 6 5.4685 -1.6641 -0.0023 9 6 5.8606 -2.6079 -1.1409 10 6 7.3780 -2.8037 -1.1414 11 6 7.7643 -3.7328 -2.2633 12 1 7.0036 -4.1430 -2.9109 13 6 9.0888 -4.0600 -2.4623 14 7 10.0152 -3.5610 -1.6734 15 14 9.5677 -5.2111 -3.8534 16 1 9.8365 -4.4194 -5.0807 17 1 10.7892 -5.9654 -3.4734 18 1 8.4582 -6.1636 -4.1118 19 6 3.5722 -0.7734 1.2106 20 6 2.0430 -0.7247 1.2475 21 1 -0.3633 -1.0277 0.0024 22 1 -0.3633 0.5158 0.8889 23 1 -0.3634 0.5118 -0.8911 24 1 1.6455 -1.7397 -1.2677 25 1 1.7146 -0.1889 -2.1394 26 1 3.9373 -1.3006 -2.0944 27 1 3.9666 0.2425 -1.2082 28 1 5.9588 -0.7009 -0.1436 29 1 5.7800 -2.0942 0.9496 30 1 5.3704 -3.5711 -0.9996 31 1 5.5492 -2.1779 -2.0928 32 1 7.8686 -1.8407 -1.2824 33 1 7.6891 -3.2340 -0.1895 34 1 10.9470 -3.7909 -1.8136 35 1 3.9679 0.2422 1.2048 36 1 3.9401 -1.3014 2.0902 37 1 1.7175 -0.1891 2.1393 38 1 1.6464 -1.7397 1.2675 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227352714.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:14 Heat of formation + Delta-G solvation = -16.706515 kcal Electronic energy + Delta-G solvation = -16586.830865 eV Core-core repulsion = 14041.341210 eV Total energy + Delta-G solvation = -2545.489655 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.83123 -37.81490 -36.24888 -35.15494 -33.13071 -31.90699 -29.68511 -27.45116 -24.88948 -24.30424 -23.69905 -22.04036 -21.45103 -18.49862 -17.65811 -16.70047 -16.35552 -16.24622 -15.85704 -15.46408 -15.38983 -14.80314 -14.57420 -14.34613 -13.75522 -13.64385 -13.33730 -13.27654 -13.17261 -12.82495 -12.76637 -12.63276 -12.42566 -12.24964 -12.17176 -12.10627 -11.58088 -11.44760 -11.32978 -11.17281 -10.95604 -10.54240 -9.32083 -8.19255 -6.30500 1.41115 1.42675 1.54097 1.72265 1.75658 2.41914 2.82097 3.00422 3.14141 3.70133 3.75542 3.91353 4.08212 4.25576 4.30728 4.42566 4.48610 4.59301 4.70860 4.76441 4.81408 4.90239 4.94770 5.01001 5.04364 5.08973 5.15947 5.24249 5.26816 5.31109 5.40798 5.53583 5.75005 5.86678 6.05788 6.18495 6.27723 6.54193 6.86837 7.39043 8.92916 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.047179 B = 0.004307 C = 0.004228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.342339 B = 6500.041120 C = 6621.414155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.034 3.966 3 C 0.237 3.763 4 N -0.500 5.500 5 C -0.096 4.096 6 C 0.042 3.958 7 N -0.527 5.527 8 C 0.065 3.935 9 C -0.087 4.087 10 C 0.023 3.977 11 C -0.540 4.540 12 H 0.063 0.937 13 C -0.003 4.003 14 N -0.936 5.936 15 Si 0.966 3.034 16 H -0.274 1.274 17 H -0.282 1.282 18 H -0.260 1.260 19 C 0.043 3.957 20 C -0.095 4.095 21 H 0.105 0.895 22 H 0.070 0.930 23 H 0.067 0.933 24 H 0.118 0.882 25 H 0.086 0.914 26 H 0.079 0.921 27 H 0.004 0.996 28 H 0.008 0.992 29 H 0.072 0.928 30 H 0.061 0.939 31 H 0.049 0.951 32 H -0.017 1.017 33 H -0.007 1.007 34 H 0.263 0.737 35 H 0.005 0.995 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.719 3.107 4.259 22.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.030 3.970 3 C -0.080 4.080 4 N -0.175 5.175 5 C -0.135 4.135 6 C -0.086 4.086 7 N -0.252 5.252 8 C -0.063 4.063 9 C -0.125 4.125 10 C -0.014 4.014 11 C -0.578 4.578 12 H 0.081 0.919 13 C -0.200 4.200 14 N -0.577 5.577 15 Si 0.791 3.209 16 H -0.199 1.199 17 H -0.208 1.208 18 H -0.184 1.184 19 C -0.085 4.085 20 C -0.134 4.134 21 H 0.124 0.876 22 H 0.089 0.911 23 H 0.086 0.914 24 H 0.136 0.864 25 H 0.104 0.896 26 H 0.098 0.902 27 H 0.022 0.978 28 H 0.027 0.973 29 H 0.090 0.910 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.001 0.999 33 H 0.011 0.989 34 H 0.072 0.928 35 H 0.023 0.977 36 H 0.106 0.894 37 H 0.109 0.891 38 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -21.195 4.290 4.299 22.048 hybrid contribution 1.584 0.396 -0.559 1.726 sum -19.611 4.686 3.741 20.507 Atomic orbital electron populations 1.21878 0.88322 1.05551 1.03421 1.18790 0.98563 0.80721 0.98923 1.29954 0.91497 0.95151 0.91370 1.81216 1.10989 1.14949 1.10384 1.21762 0.92638 1.03142 0.95944 1.22293 0.97355 0.95058 0.93920 1.62082 1.11691 1.48971 1.02408 1.22030 0.87163 0.97161 0.99910 1.21380 0.95736 0.98650 0.96694 1.18997 0.92356 0.94615 0.95475 1.21698 0.92906 1.28230 1.14985 0.91927 1.26017 0.96710 0.98106 0.99177 1.70106 1.01155 1.46181 1.40253 0.85425 0.77955 0.78782 0.78768 1.19931 1.20790 1.18357 1.22283 0.97448 0.95345 0.93395 1.21763 0.92730 1.03141 0.95722 0.87639 0.91122 0.91432 0.86375 0.89568 0.90219 0.97799 0.97332 0.90954 0.91983 0.93205 0.99882 0.98886 0.92833 0.97659 0.89360 0.89058 0.86298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.02 8.44 71.98 0.61 -0.41 16 2 C 0.03 0.49 0.72 -53.91 -0.04 0.45 16 3 C 0.24 5.45 11.60 89.44 1.04 6.49 16 4 N -0.50 -14.96 18.54 20.01 0.37 -14.59 16 5 C -0.10 -1.54 4.86 30.64 0.15 -1.39 16 6 C 0.04 1.07 5.09 86.31 0.44 1.51 16 7 N -0.53 -14.41 4.66 -896.14 -4.17 -18.58 16 8 C 0.07 2.30 4.96 86.30 0.43 2.73 16 9 C -0.09 -3.61 5.08 30.59 0.16 -3.45 16 10 C 0.02 1.25 4.97 29.85 0.15 1.40 16 11 C -0.54 -31.16 9.11 25.60 0.23 -30.93 16 12 H 0.06 3.43 7.74 -2.91 -0.02 3.41 16 13 C 0.00 -0.16 5.46 84.66 0.46 0.30 16 14 N -0.94 -58.05 13.29 21.45 0.28 -57.77 16 15 Si 0.97 44.57 29.54 68.60 2.03 46.59 16 16 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 17 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 18 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 19 C 0.04 0.97 5.25 86.33 0.45 1.42 16 20 C -0.10 -1.32 4.86 30.65 0.15 -1.17 16 21 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 22 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 23 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 24 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.09 1.20 8.14 -2.39 -0.02 1.19 16 26 H 0.08 2.21 6.22 -2.39 -0.01 2.19 16 27 H 0.00 0.11 7.32 -2.38 -0.02 0.10 16 28 H 0.01 0.33 8.12 -2.39 -0.02 0.31 16 29 H 0.07 2.52 7.99 -2.39 -0.02 2.50 16 30 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 31 H 0.05 2.03 6.43 -2.39 -0.02 2.01 16 32 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 33 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 34 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 35 H 0.01 0.14 7.31 -2.39 -0.02 0.12 16 36 H 0.09 1.86 8.01 -2.39 -0.02 1.84 16 37 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -71.24 306.62 3.74 -67.50 By element: Atomic # 1 Polarization: -1.11 SS G_CDS: 1.01 Total: -0.10 kcal Atomic # 6 Polarization: -27.28 SS G_CDS: 4.22 Total: -23.06 kcal Atomic # 7 Polarization: -87.42 SS G_CDS: -3.52 Total: -90.93 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.59 kcal Total: -71.24 3.74 -67.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227352714.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.791 kcal (2) G-P(sol) polarization free energy of solvation -71.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds