Wall clock time and date at job start Sun Mar 29 2020 22:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 120.00299 * 2 1 4 4 H 1.48505 * 109.47073 * 269.99874 * 3 2 1 5 5 H 1.48502 * 109.47041 * 29.99754 * 3 2 1 6 6 H 1.48499 * 109.47302 * 149.99960 * 3 2 1 7 7 C 1.37879 * 119.99890 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00321 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99830 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.46968 * 179.97438 * 9 7 2 11 11 C 1.34779 * 119.99956 * 179.97438 * 10 9 7 12 12 O 1.21622 * 120.00106 * 0.02562 * 11 10 9 13 13 C 1.47239 * 119.99913 * 180.02562 * 11 10 9 14 14 C 1.40244 * 120.23913 * 270.00560 * 13 11 10 15 15 O 1.35655 * 120.12153 * 359.95772 * 14 13 11 16 16 C 1.38545 * 119.75893 * 180.23178 * 14 13 11 17 17 C 1.38249 * 120.23419 * 359.51628 * 16 14 13 18 18 C 1.38248 * 120.48444 * 0.46253 * 17 16 14 19 19 C 1.38543 * 120.23543 * 359.79386 * 18 17 16 20 20 O 1.35661 * 120.12314 * 179.97438 * 19 18 17 21 21 H 0.97001 * 119.99878 * 0.02562 * 1 2 3 22 22 H 1.09007 * 109.46886 * 59.99995 * 9 7 2 23 23 H 1.08995 * 109.47465 * 299.99574 * 9 7 2 24 24 H 0.96998 * 120.00254 * 0.02562 * 10 9 7 25 25 H 0.96700 * 114.00230 * 90.00054 * 15 14 13 26 26 H 1.07998 * 119.88919 * 179.72467 * 16 14 13 27 27 H 1.08005 * 119.76165 * 180.23653 * 17 16 14 28 28 H 1.07997 * 119.88331 * 179.76824 * 18 17 16 29 29 H 0.96699 * 114.00160 * 269.97689 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7536 -4.8834 0.0011 12 8 0.5578 -5.1056 0.0011 13 6 2.7104 -6.0025 0.0016 14 6 3.1695 -6.5398 -1.2097 15 8 2.7331 -6.0309 -2.3890 16 6 4.0661 -7.5960 -1.1976 17 6 4.5157 -8.1137 0.0029 18 6 4.0700 -7.5913 1.2028 19 6 3.1694 -6.5386 1.2138 20 8 2.7332 -6.0281 2.3925 21 1 -0.4850 0.8401 -0.0004 22 1 0.6246 -2.5570 -0.8897 23 1 0.6240 -2.5568 0.8903 24 1 3.1565 -3.4355 0.0009 25 1 3.2776 -5.3089 -2.7314 26 1 4.4176 -8.0143 -2.1291 27 1 5.2176 -8.9346 0.0034 28 1 4.4248 -8.0056 2.1349 29 1 1.9352 -6.4541 2.7343 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227840726.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:08 Heat of formation + Delta-G solvation = -99.966531 kcal Electronic energy + Delta-G solvation = -16259.447751 eV Core-core repulsion = 13340.962819 eV Total energy + Delta-G solvation = -2918.484932 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.083 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.36114 -38.07901 -37.83566 -35.74965 -34.16678 -32.34309 -30.67024 -29.41895 -27.21457 -23.99489 -22.57772 -22.21487 -19.99068 -18.93478 -17.66631 -17.40225 -16.33835 -16.01196 -15.35455 -15.22620 -14.75524 -14.53837 -14.15033 -13.74956 -13.20629 -12.78377 -12.30076 -11.97404 -11.87124 -11.69770 -11.00792 -10.98908 -10.89390 -10.67907 -10.33305 -9.41655 -9.20771 -8.82070 -8.73706 -8.69051 -7.90318 -6.16154 -4.23098 0.98462 1.05907 3.24247 3.25165 3.30642 3.33124 3.34837 3.88362 4.05269 4.36349 4.38250 4.81555 5.07975 5.13501 5.20028 5.32145 5.63937 5.69361 6.14708 6.15365 6.25002 6.48209 7.29656 7.39806 7.51615 7.57940 7.63671 7.66471 7.96596 8.59287 8.76217 9.04845 9.43114 10.94100 Molecular weight = 237.08amu Principal moments of inertia in cm(-1) A = 0.034768 B = 0.005900 C = 0.005742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.155188 B = 4744.393071 C = 4874.793836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.543 4.543 8 H 0.063 0.937 9 C 0.249 3.751 10 N -0.699 5.699 11 C 0.557 3.443 12 O -0.547 6.547 13 C -0.171 4.171 14 C 0.154 3.846 15 O -0.489 6.489 16 C -0.159 4.159 17 C -0.081 4.081 18 C -0.159 4.159 19 C 0.155 3.845 20 O -0.489 6.489 21 H 0.266 0.734 22 H 0.029 0.971 23 H 0.028 0.972 24 H 0.391 0.609 25 H 0.396 0.604 26 H 0.135 0.865 27 H 0.133 0.867 28 H 0.135 0.865 29 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.746 -14.144 0.012 17.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.581 4.581 8 H 0.081 0.919 9 C 0.129 3.871 10 N -0.346 5.346 11 C 0.340 3.660 12 O -0.426 6.426 13 C -0.175 4.175 14 C 0.109 3.891 15 O -0.299 6.299 16 C -0.177 4.177 17 C -0.099 4.099 18 C -0.178 4.178 19 C 0.109 3.891 20 O -0.301 6.301 21 H 0.076 0.924 22 H 0.047 0.953 23 H 0.046 0.954 24 H 0.223 0.777 25 H 0.254 0.746 26 H 0.152 0.848 27 H 0.151 0.849 28 H 0.152 0.848 29 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 9.729 -14.159 0.017 17.179 hybrid contribution 0.782 1.086 0.004 1.338 sum 10.511 -13.073 0.021 16.774 Atomic orbital electron populations 1.69976 1.06109 1.27315 1.48855 1.24950 0.94920 0.99445 0.94685 0.86403 0.79643 0.82596 0.78200 1.20461 1.20984 1.19729 1.21207 0.93252 0.90366 1.53267 0.91899 1.19159 0.88285 0.81792 0.97878 1.46445 1.11164 1.05698 1.71251 1.17754 0.87639 0.82991 0.77581 1.90776 1.15912 1.84826 1.51064 1.21030 1.01697 1.01163 0.93603 1.18273 0.92895 0.93781 0.84194 1.84782 1.55696 1.54965 1.34501 1.21356 0.98567 0.98585 0.99235 1.20937 0.98631 0.99025 0.91289 1.21363 1.00452 0.96704 0.99233 1.18285 0.94634 0.91985 0.84191 1.84743 1.48301 1.62447 1.34564 0.92429 0.95343 0.95391 0.77695 0.74612 0.84760 0.84949 0.84760 0.74475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.29 13.29 55.43 0.74 -25.55 15 2 C 0.06 1.78 5.46 -17.82 -0.10 1.69 15 3 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 15 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 15 5 H -0.28 -6.57 7.11 56.52 0.40 -6.16 15 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 15 7 C -0.54 -14.93 9.28 -34.44 -0.32 -15.25 15 8 H 0.06 1.62 7.60 -52.49 -0.40 1.22 15 9 C 0.25 6.78 5.43 -5.19 -0.03 6.75 15 10 N -0.70 -15.56 5.54 -62.62 -0.35 -15.91 15 11 C 0.56 12.14 6.32 -12.60 -0.08 12.06 15 12 O -0.55 -14.21 17.11 5.26 0.09 -14.12 15 13 C -0.17 -2.92 5.65 -104.73 -0.59 -3.51 15 14 C 0.15 2.27 6.71 -38.71 -0.26 2.01 15 15 O -0.49 -7.24 12.95 -18.66 -0.24 -7.48 15 16 C -0.16 -1.78 9.97 -39.46 -0.39 -2.18 15 17 C -0.08 -0.79 10.02 -39.57 -0.40 -1.19 15 18 C -0.16 -1.78 9.97 -39.47 -0.39 -2.17 15 19 C 0.15 2.27 6.72 -38.71 -0.26 2.01 15 20 O -0.49 -7.21 12.95 -18.68 -0.24 -7.45 15 21 H 0.27 7.39 8.31 -40.82 -0.34 7.05 15 22 H 0.03 0.85 8.14 -51.93 -0.42 0.43 15 23 H 0.03 0.84 8.14 -51.93 -0.42 0.42 15 24 H 0.39 7.67 8.30 -40.82 -0.34 7.33 15 25 H 0.40 4.13 9.06 45.56 0.41 4.55 15 26 H 0.13 1.18 8.06 -52.49 -0.42 0.76 15 27 H 0.13 0.86 8.06 -52.48 -0.42 0.44 15 28 H 0.13 1.18 8.06 -52.49 -0.42 0.76 15 29 H 0.40 4.32 9.06 45.56 0.41 4.74 15 LS Contribution 271.00 15.07 4.08 4.08 Total: -1.00 -35.49 271.00 -4.92 -40.41 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -1.16 Total: 9.81 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: -2.82 Total: 0.23 kcal Atomic # 7 Polarization: -41.85 SS G_CDS: 0.39 Total: -41.46 kcal Atomic # 8 Polarization: -28.65 SS G_CDS: -0.39 Total: -29.04 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -35.49 -4.92 -40.41 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227840726.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.554 kcal (2) G-P(sol) polarization free energy of solvation -35.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds