Wall clock time and date at job start Sun Mar 29 2020 22:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 120.00299 * 2 1 4 4 H 1.48505 * 109.47073 * 269.99874 * 3 2 1 5 5 H 1.48502 * 109.47041 * 29.99754 * 3 2 1 6 6 H 1.48499 * 109.47302 * 149.99960 * 3 2 1 7 7 C 1.37879 * 119.99890 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00321 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99830 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.46968 * 179.97438 * 9 7 2 11 11 C 1.34779 * 119.99956 * 179.97438 * 10 9 7 12 12 O 1.21622 * 120.00106 * 0.02562 * 11 10 9 13 13 C 1.47239 * 119.99913 * 180.02562 * 11 10 9 14 14 C 1.40244 * 120.23913 * 270.00560 * 13 11 10 15 15 O 1.35655 * 120.12153 * 359.95772 * 14 13 11 16 16 C 1.38545 * 119.75893 * 180.23178 * 14 13 11 17 17 C 1.38249 * 120.23419 * 359.51628 * 16 14 13 18 18 C 1.38248 * 120.48444 * 0.46253 * 17 16 14 19 19 C 1.38543 * 120.23543 * 359.79386 * 18 17 16 20 20 O 1.35661 * 120.12314 * 179.97438 * 19 18 17 21 21 H 0.97001 * 119.99878 * 0.02562 * 1 2 3 22 22 H 1.09007 * 109.46886 * 59.99995 * 9 7 2 23 23 H 1.08995 * 109.47465 * 299.99574 * 9 7 2 24 24 H 0.96998 * 120.00254 * 0.02562 * 10 9 7 25 25 H 0.96700 * 114.00230 * 90.00054 * 15 14 13 26 26 H 1.07998 * 119.88919 * 179.72467 * 16 14 13 27 27 H 1.08005 * 119.76165 * 180.23653 * 17 16 14 28 28 H 1.07997 * 119.88331 * 179.76824 * 18 17 16 29 29 H 0.96699 * 114.00160 * 269.97689 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7536 -4.8834 0.0011 12 8 0.5578 -5.1056 0.0011 13 6 2.7104 -6.0025 0.0016 14 6 3.1695 -6.5398 -1.2097 15 8 2.7331 -6.0309 -2.3890 16 6 4.0661 -7.5960 -1.1976 17 6 4.5157 -8.1137 0.0029 18 6 4.0700 -7.5913 1.2028 19 6 3.1694 -6.5386 1.2138 20 8 2.7332 -6.0281 2.3925 21 1 -0.4850 0.8401 -0.0004 22 1 0.6246 -2.5570 -0.8897 23 1 0.6240 -2.5568 0.8903 24 1 3.1565 -3.4355 0.0009 25 1 3.2776 -5.3089 -2.7314 26 1 4.4176 -8.0143 -2.1291 27 1 5.2176 -8.9346 0.0034 28 1 4.4248 -8.0056 2.1349 29 1 1.9352 -6.4541 2.7343 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227840726.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:08 Heat of formation + Delta-G solvation = -131.447844 kcal Electronic energy + Delta-G solvation = -16260.812883 eV Core-core repulsion = 13340.962819 eV Total energy + Delta-G solvation = -2919.850064 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.083 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.59462 -39.71804 -38.92148 -36.76334 -36.21576 -34.41242 -31.93106 -30.37749 -29.23469 -25.58613 -23.94186 -23.58430 -21.65265 -20.12882 -19.24499 -18.53033 -17.88033 -17.44617 -17.15152 -16.55336 -16.19505 -15.69767 -15.61594 -15.52564 -14.67830 -14.10135 -13.97804 -13.90282 -13.17497 -12.97541 -12.76274 -12.72301 -12.28734 -12.12276 -11.77822 -11.54320 -10.94052 -10.84209 -9.96006 -9.91926 -9.64452 -8.32056 -6.49588 -0.04699 0.11652 1.41377 1.44299 1.54811 1.55832 2.26104 2.40326 2.54367 2.90283 3.02505 3.40427 3.74795 4.06428 4.12154 4.37631 4.63466 4.72630 5.02761 5.15442 5.22109 5.25063 5.32786 5.39748 5.58876 5.65926 5.78866 6.58703 6.62437 6.67655 6.75262 7.16702 7.32483 8.80364 Molecular weight = 237.08amu Principal moments of inertia in cm(-1) A = 0.034768 B = 0.005900 C = 0.005742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.155188 B = 4744.393071 C = 4874.793836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.004 3.996 3 Si 0.988 3.012 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.257 1.257 7 C -0.557 4.557 8 H 0.082 0.918 9 C 0.267 3.733 10 N -0.693 5.693 11 C 0.560 3.440 12 O -0.600 6.600 13 C -0.210 4.210 14 C 0.141 3.859 15 O -0.509 6.509 16 C -0.149 4.149 17 C -0.057 4.057 18 C -0.149 4.149 19 C 0.141 3.859 20 O -0.508 6.508 21 H 0.270 0.730 22 H -0.010 1.010 23 H -0.013 1.013 24 H 0.405 0.595 25 H 0.410 0.590 26 H 0.165 0.835 27 H 0.182 0.818 28 H 0.166 0.834 29 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.193 -15.341 -0.016 20.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.195 4.195 3 Si 0.811 3.189 4 H -0.193 1.193 5 H -0.208 1.208 6 H -0.180 1.180 7 C -0.595 4.595 8 H 0.100 0.900 9 C 0.144 3.856 10 N -0.340 5.340 11 C 0.347 3.653 12 O -0.482 6.482 13 C -0.214 4.214 14 C 0.096 3.904 15 O -0.323 6.323 16 C -0.168 4.168 17 C -0.074 4.074 18 C -0.167 4.167 19 C 0.096 3.904 20 O -0.321 6.321 21 H 0.079 0.921 22 H 0.008 0.992 23 H 0.005 0.995 24 H 0.240 0.760 25 H 0.270 0.730 26 H 0.183 0.817 27 H 0.199 0.801 28 H 0.183 0.817 29 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 13.225 -15.381 -0.013 20.285 hybrid contribution -0.284 1.333 0.011 1.363 sum 12.941 -14.049 -0.002 19.100 Atomic orbital electron populations 1.70141 1.08308 1.28700 1.49683 1.26095 0.95820 1.03964 0.93650 0.85110 0.78402 0.76684 0.78734 1.19323 1.20778 1.18030 1.21558 0.94192 0.90399 1.53341 0.89969 1.18611 0.88612 0.84156 0.94181 1.46199 1.11071 1.05231 1.71539 1.18531 0.87856 0.83699 0.75202 1.90723 1.18784 1.85678 1.53062 1.20805 1.03415 1.01019 0.96144 1.18565 0.93938 0.94896 0.83033 1.84739 1.56993 1.55795 1.34748 1.21692 0.96913 0.96753 1.01399 1.21528 0.97420 0.98713 0.89775 1.21697 0.98655 0.94980 1.01394 1.18575 0.95637 0.93185 0.83049 1.84697 1.49120 1.63501 1.34797 0.92117 0.99205 0.99467 0.75979 0.72988 0.81701 0.80110 0.81697 0.73153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.11 13.29 21.45 0.28 -56.82 15 2 C 0.00 0.25 5.46 84.66 0.46 0.71 15 3 Si 0.99 42.98 29.54 68.60 2.03 45.01 15 4 H -0.27 -11.16 7.11 99.48 0.71 -10.46 15 5 H -0.28 -12.12 7.11 99.48 0.71 -11.41 15 6 H -0.26 -10.43 7.11 99.48 0.71 -9.73 15 7 C -0.56 -31.34 9.28 25.60 0.24 -31.10 15 8 H 0.08 4.20 7.60 -2.91 -0.02 4.18 15 9 C 0.27 15.44 5.43 85.63 0.46 15.91 15 10 N -0.69 -32.42 5.54 -470.28 -2.61 -35.02 15 11 C 0.56 25.75 6.32 86.61 0.55 26.30 15 12 O -0.60 -33.41 17.11 -4.10 -0.07 -33.48 15 13 C -0.21 -7.22 5.65 -19.93 -0.11 -7.33 15 14 C 0.14 4.00 6.71 22.83 0.15 4.16 15 15 O -0.51 -15.08 12.95 -89.70 -1.16 -16.24 15 16 C -0.15 -2.77 9.97 22.35 0.22 -2.55 15 17 C -0.06 -0.81 10.02 22.27 0.22 -0.58 15 18 C -0.15 -2.76 9.97 22.35 0.22 -2.54 15 19 C 0.14 3.99 6.72 22.83 0.15 4.14 15 20 O -0.51 -14.98 12.95 -89.77 -1.16 -16.14 15 21 H 0.27 15.40 8.31 -92.71 -0.77 14.63 15 22 H -0.01 -0.64 8.14 -2.38 -0.02 -0.66 15 23 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 15 24 H 0.41 16.34 8.30 -92.71 -0.77 15.57 15 25 H 0.41 8.60 9.06 -74.06 -0.67 7.93 15 26 H 0.17 2.07 8.06 -2.91 -0.02 2.05 15 27 H 0.18 0.96 8.06 -2.91 -0.02 0.93 15 28 H 0.17 2.06 8.06 -2.91 -0.02 2.04 15 29 H 0.41 9.17 9.06 -74.06 -0.67 8.50 15 Total: -1.00 -81.84 271.00 -1.01 -82.85 By element: Atomic # 1 Polarization: 23.63 SS G_CDS: -0.89 Total: 22.74 kcal Atomic # 6 Polarization: 4.54 SS G_CDS: 2.57 Total: 7.12 kcal Atomic # 7 Polarization: -89.53 SS G_CDS: -2.32 Total: -91.85 kcal Atomic # 8 Polarization: -63.47 SS G_CDS: -2.39 Total: -65.87 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Total: -81.84 -1.01 -82.85 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227840726.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.596 kcal (2) G-P(sol) polarization free energy of solvation -81.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds