Wall clock time and date at job start Sun Mar 29 2020 22:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30530 * 1 3 3 Si 1.86803 * 119.99798 * 2 1 4 4 H 1.48504 * 109.47012 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47259 * 299.99831 * 3 2 1 6 6 H 1.48499 * 109.47127 * 60.00036 * 3 2 1 7 7 C 1.40345 * 120.00292 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99950 * 180.02562 * 7 2 1 9 9 C 1.41766 * 119.99684 * 359.97438 * 7 2 1 10 10 O 1.21821 * 120.00194 * 0.02562 * 9 7 2 11 11 C 1.47566 * 119.99774 * 180.02562 * 9 7 2 12 12 C 1.39978 * 120.09487 * 359.97438 * 11 9 7 13 13 C 1.37566 * 119.90270 * 179.74349 * 12 11 9 14 14 C 1.39186 * 120.09696 * 0.55609 * 13 12 11 15 15 O 1.35665 * 119.90692 * 179.72204 * 14 13 12 16 16 C 1.39146 * 120.18639 * 359.44224 * 14 13 12 17 17 N 1.48016 * 119.94970 * 180.25994 * 16 14 13 18 18 O 1.21804 * 119.99887 * 180.02562 * 17 16 14 19 19 O 1.21799 * 120.00191 * 359.97438 * 17 16 14 20 20 C 1.37609 * 120.09201 * 0.27666 * 16 14 13 21 21 H 0.97001 * 120.00475 * 0.02562 * 1 2 3 22 22 H 1.08001 * 120.04597 * 0.04137 * 12 11 9 23 23 H 1.08001 * 119.95421 * 180.29086 * 13 12 11 24 24 H 0.96701 * 113.99700 * 269.72585 * 15 14 13 25 25 H 1.07999 * 120.04578 * 179.97438 * 20 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3053 0.0000 0.0000 3 14 2.2393 1.6178 0.0000 4 1 3.6993 1.3465 0.0006 5 1 1.8805 2.3965 -1.2125 6 1 1.8805 2.3965 1.2125 7 6 2.0071 -1.2154 -0.0005 8 1 3.0870 -1.2153 -0.0001 9 6 1.2983 -2.4431 -0.0005 10 8 0.0800 -2.4432 -0.0005 11 6 2.0361 -3.7211 -0.0005 12 6 3.4359 -3.7233 -0.0011 13 6 4.1198 -4.9169 0.0043 14 6 3.4219 -6.1212 -0.0015 15 8 4.1003 -7.2961 -0.0019 16 6 2.0305 -6.1235 -0.0010 17 7 1.2937 -7.4073 -0.0013 18 8 0.0756 -7.4103 -0.0013 19 8 1.9053 -8.4605 -0.0025 20 6 1.3385 -4.9341 -0.0005 21 1 -0.4851 0.8400 -0.0004 22 1 3.9782 -2.7893 -0.0008 23 1 5.1998 -4.9196 0.0086 24 1 4.2967 -7.6365 -0.8854 25 1 0.2585 -4.9367 -0.0005 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000228941455.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:47 Heat of formation + Delta-G solvation = -65.315973 kcal Electronic energy + Delta-G solvation = -15997.679378 eV Core-core repulsion = 12944.863913 eV Total energy + Delta-G solvation = -3052.815465 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 237.052 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.84245 -39.55225 -37.56049 -36.20121 -35.77248 -32.98909 -31.78736 -30.00203 -27.35667 -25.81348 -23.32581 -22.21706 -20.42106 -18.95945 -18.45171 -17.98641 -17.19235 -16.44632 -15.96191 -15.34613 -15.26187 -14.26084 -13.96630 -13.21015 -12.93759 -12.54042 -12.01853 -11.71550 -11.59464 -11.34895 -11.18509 -11.16080 -10.78418 -10.65079 -10.54931 -10.31611 -9.34402 -9.24844 -8.49660 -7.84321 -6.60660 -5.22682 0.19801 1.07424 1.70204 1.77240 2.86494 2.97560 3.01507 3.31827 3.78923 3.92052 4.23655 4.66566 5.02607 5.28641 5.34231 5.42178 5.54283 5.85917 6.04002 6.24649 6.58791 6.62247 6.81903 6.95051 7.44449 7.68908 8.03183 8.45342 8.49024 9.98576 10.20215 Molecular weight = 237.05amu Principal moments of inertia in cm(-1) A = 0.042900 B = 0.006506 C = 0.005664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.531109 B = 4302.437739 C = 4942.562034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.724 5.724 2 C 0.076 3.924 3 Si 0.912 3.088 4 H -0.259 1.259 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.507 4.507 8 H 0.078 0.922 9 C 0.380 3.620 10 O -0.533 6.533 11 C -0.104 4.104 12 C -0.032 4.032 13 C -0.158 4.158 14 C 0.158 3.842 15 O -0.478 6.478 16 C -0.083 4.083 17 N 0.037 4.963 18 O -0.177 6.177 19 O -0.158 6.158 20 C -0.021 4.021 21 H 0.279 0.721 22 H 0.154 0.846 23 H 0.146 0.854 24 H 0.397 0.603 25 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.079 -4.499 -1.700 10.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.352 5.352 2 C -0.148 4.148 3 Si 0.735 3.265 4 H -0.182 1.182 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.538 4.538 8 H 0.096 0.904 9 C 0.276 3.724 10 O -0.423 6.423 11 C -0.107 4.107 12 C -0.050 4.050 13 C -0.177 4.177 14 C 0.110 3.890 15 O -0.289 6.289 16 C -0.167 4.167 17 N 0.554 4.446 18 O -0.389 6.389 19 O -0.375 6.375 20 C -0.041 4.041 21 H 0.090 0.910 22 H 0.172 0.828 23 H 0.164 0.836 24 H 0.255 0.745 25 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 8.608 -3.800 -1.096 9.473 hybrid contribution 0.426 0.273 -0.470 0.691 sum 9.035 -3.527 -1.567 9.824 Atomic orbital electron populations 1.69941 1.07658 1.28692 1.28895 1.26031 0.94756 1.01288 0.92773 0.86223 0.80663 0.80776 0.78830 1.18230 1.19605 1.19602 1.20933 0.95002 0.91291 1.46559 0.90383 1.18038 0.88686 0.85057 0.80633 1.90574 1.14625 1.87759 1.49296 1.22210 0.94213 0.97280 0.96954 1.21966 0.94129 0.98297 0.90616 1.21454 1.00998 0.90539 1.04697 1.18286 0.86482 0.87048 0.97142 1.84781 1.75382 1.34978 1.33721 1.21658 0.91650 0.84173 1.19268 1.43520 1.01111 1.02732 0.97261 1.94545 0.95643 1.94243 1.54445 1.94488 1.69735 1.20201 1.53077 1.21308 1.02782 0.88690 0.91287 0.91007 0.82846 0.83581 0.74476 0.82301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -19.36 11.73 55.57 0.65 -18.71 15 2 C 0.08 1.87 5.50 -17.31 -0.10 1.78 15 3 Si 0.91 17.45 29.56 -169.99 -5.03 12.43 15 4 H -0.26 -4.70 7.11 56.52 0.40 -4.30 15 5 H -0.27 -5.13 7.11 56.52 0.40 -4.73 15 6 H -0.27 -5.14 7.11 56.52 0.40 -4.74 15 7 C -0.51 -12.43 8.86 -37.44 -0.33 -12.77 15 8 H 0.08 1.66 6.01 -52.49 -0.32 1.34 15 9 C 0.38 9.77 6.91 -34.43 -0.24 9.53 15 10 O -0.53 -15.86 14.89 5.08 0.08 -15.79 15 11 C -0.10 -2.17 5.89 -104.81 -0.62 -2.78 15 12 C -0.03 -0.52 9.43 -39.18 -0.37 -0.89 15 13 C -0.16 -2.19 9.97 -39.47 -0.39 -2.59 15 14 C 0.16 2.44 6.70 -38.89 -0.26 2.18 15 15 O -0.48 -6.41 11.49 -40.85 -0.47 -6.88 15 16 C -0.08 -1.53 6.86 -79.84 -0.55 -2.08 15 17 N 0.04 0.71 4.45 34.01 0.15 0.86 15 18 O -0.18 -3.60 18.44 -29.46 -0.54 -4.14 15 19 O -0.16 -2.90 17.23 -36.50 -0.63 -3.53 15 20 C -0.02 -0.43 9.10 -39.18 -0.36 -0.79 15 21 H 0.28 6.63 8.29 -40.82 -0.34 6.30 15 22 H 0.15 2.26 6.19 -52.49 -0.33 1.93 15 23 H 0.15 1.51 8.06 -52.49 -0.42 1.09 15 24 H 0.40 3.44 9.06 45.56 0.41 3.85 15 25 H 0.16 3.44 7.19 -52.49 -0.38 3.07 15 LS Contribution 243.13 15.07 3.66 3.66 Total: -1.00 -31.20 243.13 -5.49 -36.69 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: -0.16 Total: 3.81 kcal Atomic # 6 Polarization: -5.20 SS G_CDS: -3.21 Total: -8.40 kcal Atomic # 7 Polarization: -18.65 SS G_CDS: 0.80 Total: -17.85 kcal Atomic # 8 Polarization: -28.77 SS G_CDS: -1.57 Total: -30.34 kcal Atomic # 14 Polarization: 17.45 SS G_CDS: -5.03 Total: 12.43 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -31.20 -5.49 -36.69 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228941455.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.626 kcal (2) G-P(sol) polarization free energy of solvation -31.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds