Wall clock time and date at job start Sun Mar 29 2020 22:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30530 * 1 3 3 Si 1.86803 * 119.99798 * 2 1 4 4 H 1.48504 * 109.47012 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47259 * 299.99831 * 3 2 1 6 6 H 1.48499 * 109.47127 * 60.00036 * 3 2 1 7 7 C 1.40345 * 120.00292 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99950 * 180.02562 * 7 2 1 9 9 C 1.41766 * 119.99684 * 359.97438 * 7 2 1 10 10 O 1.21821 * 120.00194 * 0.02562 * 9 7 2 11 11 C 1.47566 * 119.99774 * 180.02562 * 9 7 2 12 12 C 1.39978 * 120.09487 * 359.97438 * 11 9 7 13 13 C 1.37566 * 119.90270 * 179.74349 * 12 11 9 14 14 C 1.39186 * 120.09696 * 0.55609 * 13 12 11 15 15 O 1.35665 * 119.90692 * 179.72204 * 14 13 12 16 16 C 1.39146 * 120.18639 * 359.44224 * 14 13 12 17 17 N 1.48016 * 119.94970 * 180.25994 * 16 14 13 18 18 O 1.21804 * 119.99887 * 180.02562 * 17 16 14 19 19 O 1.21799 * 120.00191 * 359.97438 * 17 16 14 20 20 C 1.37609 * 120.09201 * 0.27666 * 16 14 13 21 21 H 0.97001 * 120.00475 * 0.02562 * 1 2 3 22 22 H 1.08001 * 120.04597 * 0.04137 * 12 11 9 23 23 H 1.08001 * 119.95421 * 180.29086 * 13 12 11 24 24 H 0.96701 * 113.99700 * 269.72585 * 15 14 13 25 25 H 1.07999 * 120.04578 * 179.97438 * 20 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3053 0.0000 0.0000 3 14 2.2393 1.6178 0.0000 4 1 3.6993 1.3465 0.0006 5 1 1.8805 2.3965 -1.2125 6 1 1.8805 2.3965 1.2125 7 6 2.0071 -1.2154 -0.0005 8 1 3.0870 -1.2153 -0.0001 9 6 1.2983 -2.4431 -0.0005 10 8 0.0800 -2.4432 -0.0005 11 6 2.0361 -3.7211 -0.0005 12 6 3.4359 -3.7233 -0.0011 13 6 4.1198 -4.9169 0.0043 14 6 3.4219 -6.1212 -0.0015 15 8 4.1003 -7.2961 -0.0019 16 6 2.0305 -6.1235 -0.0010 17 7 1.2937 -7.4073 -0.0013 18 8 0.0756 -7.4103 -0.0013 19 8 1.9053 -8.4605 -0.0025 20 6 1.3385 -4.9341 -0.0005 21 1 -0.4851 0.8400 -0.0004 22 1 3.9782 -2.7893 -0.0008 23 1 5.1998 -4.9196 0.0086 24 1 4.2967 -7.6365 -0.8854 25 1 0.2585 -4.9367 -0.0005 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000228941455.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:47 Heat of formation + Delta-G solvation = -86.944772 kcal Electronic energy + Delta-G solvation = -15998.617273 eV Core-core repulsion = 12944.863913 eV Total energy + Delta-G solvation = -3053.753360 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 237.052 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.33928 -40.93015 -39.12452 -37.79727 -37.25660 -34.88004 -33.20144 -31.48294 -29.15068 -27.31577 -24.87138 -23.61686 -22.06930 -20.37096 -19.90075 -19.45774 -18.70852 -18.17265 -17.53949 -16.71814 -16.65926 -15.79790 -15.28104 -14.92203 -14.66092 -13.97197 -13.51240 -13.27938 -13.22789 -12.83534 -12.75639 -12.67750 -12.36302 -12.33156 -11.99019 -11.69511 -11.07300 -10.66954 -9.96226 -9.78065 -8.44178 -7.18189 -1.23580 -0.33622 0.27299 0.33092 1.36069 1.41732 1.60114 1.87109 2.18765 2.50091 2.71255 3.37312 3.55703 3.61279 3.95977 3.98573 4.17100 4.50388 4.70564 4.85373 5.10899 5.16486 5.22468 5.44039 5.86624 6.50267 6.52816 6.60284 6.65001 8.11953 8.39976 Molecular weight = 237.05amu Principal moments of inertia in cm(-1) A = 0.042900 B = 0.006506 C = 0.005664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.531109 B = 4302.437739 C = 4942.562034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.020 3.980 3 Si 0.999 3.001 4 H -0.231 1.231 5 H -0.269 1.269 6 H -0.270 1.270 7 C -0.526 4.526 8 H 0.114 0.886 9 C 0.355 3.645 10 O -0.598 6.598 11 C -0.137 4.137 12 C -0.011 4.011 13 C -0.131 4.131 14 C 0.187 3.813 15 O -0.475 6.475 16 C -0.100 4.100 17 N 0.036 4.964 18 O -0.241 6.241 19 O -0.114 6.114 20 C -0.037 4.037 21 H 0.284 0.716 22 H 0.178 0.822 23 H 0.203 0.797 24 H 0.424 0.576 25 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.917 -4.445 -1.818 14.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.200 4.200 3 Si 0.817 3.183 4 H -0.153 1.153 5 H -0.194 1.194 6 H -0.195 1.195 7 C -0.556 4.556 8 H 0.132 0.868 9 C 0.255 3.745 10 O -0.492 6.492 11 C -0.139 4.139 12 C -0.029 4.029 13 C -0.149 4.149 14 C 0.139 3.861 15 O -0.290 6.290 16 C -0.184 4.184 17 N 0.551 4.449 18 O -0.436 6.436 19 O -0.345 6.345 20 C -0.056 4.056 21 H 0.095 0.905 22 H 0.195 0.805 23 H 0.220 0.780 24 H 0.287 0.713 25 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 13.349 -3.724 -1.236 13.914 hybrid contribution -0.882 0.046 -0.440 0.987 sum 12.467 -3.678 -1.677 13.106 Atomic orbital electron populations 1.70114 1.10335 1.30238 1.30507 1.27377 0.95456 1.05980 0.91197 0.84931 0.80187 0.74553 0.78583 1.15341 1.19408 1.19525 1.21534 0.96820 0.91235 1.45994 0.86809 1.18801 0.88374 0.87771 0.79550 1.90524 1.17300 1.89223 1.52187 1.21719 0.96234 0.95005 1.00975 1.22169 0.91740 1.00624 0.88412 1.21900 1.03185 0.88187 1.01612 1.18458 0.84980 0.88657 0.93959 1.84727 1.74413 1.33948 1.35942 1.21772 0.92820 0.82808 1.21006 1.43670 1.01035 1.03157 0.97030 1.94577 0.96404 1.94535 1.58118 1.94424 1.69377 1.20496 1.50189 1.20964 1.01362 0.90067 0.93234 0.90538 0.80483 0.78037 0.71272 0.85927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -43.89 11.73 21.89 0.26 -43.63 15 2 C 0.02 0.97 5.50 85.40 0.47 1.44 15 3 Si 1.00 34.92 29.56 68.60 2.03 36.94 15 4 H -0.23 -7.00 7.11 99.48 0.71 -6.30 15 5 H -0.27 -9.24 7.11 99.48 0.71 -8.53 15 6 H -0.27 -9.33 7.11 99.48 0.71 -8.62 15 7 C -0.53 -25.81 8.86 23.66 0.21 -25.60 15 8 H 0.11 4.52 6.01 -2.92 -0.02 4.50 15 9 C 0.35 19.08 6.91 25.61 0.18 19.26 15 10 O -0.60 -38.50 14.89 -4.74 -0.07 -38.57 15 11 C -0.14 -5.78 5.89 -19.99 -0.12 -5.90 15 12 C -0.01 -0.33 9.43 22.53 0.21 -0.12 15 13 C -0.13 -2.87 9.97 22.34 0.22 -2.65 15 14 C 0.19 5.02 6.70 22.72 0.15 5.17 15 15 O -0.48 -10.06 11.49 -68.62 -0.79 -10.85 15 16 C -0.10 -3.59 6.86 36.45 0.25 -3.34 15 17 N 0.04 1.40 4.45 -46.30 -0.21 1.19 15 18 O -0.24 -10.40 18.44 18.88 0.35 -10.05 15 19 O -0.11 -3.94 17.23 25.62 0.44 -3.50 15 20 C -0.04 -1.56 9.10 22.53 0.20 -1.35 15 21 H 0.28 14.21 8.29 -92.71 -0.77 13.44 15 22 H 0.18 4.33 6.19 -2.91 -0.02 4.31 15 23 H 0.20 2.40 8.06 -2.91 -0.02 2.37 15 24 H 0.42 4.72 9.06 -74.06 -0.67 4.05 15 25 H 0.12 6.01 7.19 -2.91 -0.02 5.99 15 Total: -1.00 -74.75 243.13 4.39 -70.35 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: 0.60 Total: 11.22 kcal Atomic # 6 Polarization: -14.88 SS G_CDS: 1.78 Total: -13.10 kcal Atomic # 7 Polarization: -42.49 SS G_CDS: 0.05 Total: -42.44 kcal Atomic # 8 Polarization: -62.90 SS G_CDS: -0.07 Total: -62.97 kcal Atomic # 14 Polarization: 34.92 SS G_CDS: 2.03 Total: 36.94 kcal Total: -74.75 4.39 -70.35 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228941455.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.590 kcal (2) G-P(sol) polarization free energy of solvation -74.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds