Wall clock time and date at job start Sun Mar 29 2020 21:59:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 110.87461 * 2 1 4 4 C 1.55136 * 110.99246 * 236.15325 * 2 1 3 5 5 C 1.54323 * 103.01766 * 206.25443 * 4 2 1 6 6 N 1.47443 * 107.23384 * 22.28326 * 5 4 2 7 7 C 1.46903 * 110.99702 * 123.25790 * 6 5 4 8 8 C 1.53002 * 109.47041 * 69.87433 * 7 6 5 9 9 H 1.08990 * 109.47355 * 304.99499 * 8 7 6 10 10 C 1.47196 * 109.46985 * 64.99758 * 8 7 6 11 11 N 5.82722 * 152.46777 * 115.38554 * 2 1 3 12 12 C 1.53000 * 109.46776 * 184.99509 * 8 7 6 13 13 C 1.50703 * 109.46912 * 175.00090 * 12 8 7 14 14 H 1.07996 * 119.99751 * 0.02562 * 13 12 8 15 15 C 1.37877 * 120.00001 * 180.02562 * 13 12 8 16 16 N 1.31512 * 119.99923 * 180.02562 * 15 13 12 17 17 Si 1.86804 * 120.00006 * 359.97438 * 15 13 12 18 18 H 1.48497 * 109.47093 * 90.00088 * 17 15 13 19 19 H 1.48500 * 109.47049 * 210.00797 * 17 15 13 20 20 H 1.48504 * 109.47189 * 330.00185 * 17 15 13 21 21 C 1.47841 * 108.56599 * 0.98717 * 6 5 4 22 22 H 1.09004 * 110.37001 * 94.73531 * 21 6 5 23 23 C 1.52996 * 110.37522 * 217.07465 * 21 6 5 24 24 H 1.09006 * 109.46699 * 182.39482 * 1 2 3 25 25 H 1.08998 * 109.47332 * 302.39060 * 1 2 3 26 26 H 1.09000 * 109.47031 * 62.39734 * 1 2 3 27 27 H 1.08998 * 110.70549 * 87.87301 * 4 2 1 28 28 H 1.08995 * 110.85852 * 324.70645 * 4 2 1 29 29 H 1.08999 * 109.88687 * 262.87210 * 5 4 2 30 30 H 1.08995 * 110.02241 * 141.76696 * 5 4 2 31 31 H 1.08993 * 109.47016 * 309.87188 * 7 6 5 32 32 H 1.09001 * 109.46643 * 189.86899 * 7 6 5 33 33 H 1.09002 * 109.47398 * 295.00168 * 12 8 7 34 34 H 1.09001 * 109.47194 * 55.00349 * 12 8 7 35 35 H 0.97000 * 119.99684 * 180.02562 * 16 15 13 36 36 H 1.09000 * 109.47113 * 58.54645 * 23 21 6 37 37 H 1.08994 * 109.47608 * 178.55412 * 23 21 6 38 38 H 1.09002 * 109.47063 * 298.55143 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9184 1.0185 0.0000 4 6 2.0858 -0.8067 -1.2029 5 6 3.4692 -1.2708 -0.7008 6 7 3.4313 -1.2422 0.7728 7 6 3.7612 -2.5593 1.3336 8 6 5.2430 -2.8577 1.0968 9 1 5.4659 -2.7699 0.0335 10 6 6.0638 -1.8965 1.8512 11 7 6.6973 -1.1548 2.4335 12 6 5.5587 -4.2786 1.5685 13 6 6.9864 -4.6166 1.2239 14 1 7.6065 -3.8905 0.7194 15 6 7.5007 -5.8529 1.5527 16 7 8.7467 -6.1477 1.2525 17 14 6.4282 -7.1085 2.4261 18 1 5.7256 -7.9445 1.4199 19 1 7.2775 -7.9742 3.2831 20 1 5.4290 -6.4047 3.2696 21 6 2.0849 -0.8062 1.2006 22 1 1.4523 -1.6708 1.4020 23 6 2.1824 0.0843 2.4409 24 1 -0.3633 -1.0268 0.0429 25 1 -0.3634 0.5505 0.8677 26 1 -0.3633 0.4762 -0.9107 27 1 2.1885 -0.1685 -2.0805 28 1 1.4486 -1.6631 -1.4234 29 1 4.2421 -0.5940 -1.0651 30 1 3.6711 -2.2844 -1.0469 31 1 3.1545 -3.3233 0.8477 32 1 3.5571 -2.5597 2.4043 33 1 5.4206 -4.3422 2.6478 34 1 4.8892 -4.9826 1.0743 35 1 9.1084 -7.0175 1.4835 36 1 2.8052 0.9507 2.2180 37 1 1.1853 0.4178 2.7281 38 1 2.6264 -0.4811 3.2602 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000247409685.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:28 Heat of formation + Delta-G solvation = -10.541880 kcal Electronic energy + Delta-G solvation = -16859.012950 eV Core-core repulsion = 14313.790614 eV Total energy + Delta-G solvation = -2545.222337 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.51565 -38.06519 -35.74483 -34.64220 -32.88859 -32.23466 -29.60322 -27.70703 -25.05742 -24.49762 -23.27193 -21.37556 -20.78385 -18.91911 -18.15974 -17.05602 -16.47602 -15.98288 -15.56278 -15.08658 -14.84440 -14.57391 -14.38227 -14.11211 -13.98831 -13.76756 -13.33733 -13.20551 -13.11090 -12.92158 -12.70365 -12.41895 -12.35012 -12.16971 -11.93297 -11.79166 -11.63298 -11.50421 -11.38802 -11.30551 -11.09334 -10.73417 -9.17475 -8.25083 -6.30922 1.41634 1.45167 1.55403 2.04419 2.12277 2.40705 2.98541 3.11379 3.31689 3.66399 3.77969 4.07182 4.18052 4.33188 4.35959 4.52532 4.56225 4.63256 4.68507 4.69362 4.78564 4.85567 4.93704 4.96050 5.00732 5.15228 5.18062 5.21591 5.24161 5.34971 5.43429 5.46622 5.55052 5.63180 6.16057 6.20440 6.28718 6.76324 6.90005 7.33563 8.92032 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.033629 B = 0.005755 C = 0.005556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.419091 B = 4863.908446 C = 5038.184166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.093 4.093 3 H 0.074 0.926 4 C -0.130 4.130 5 C 0.033 3.967 6 N -0.550 5.550 7 C 0.067 3.933 8 C 0.027 3.973 9 H 0.109 0.891 10 C 0.264 3.736 11 N -0.516 5.516 12 C -0.002 4.002 13 C -0.532 4.532 14 H 0.027 0.973 15 C 0.004 3.996 16 N -0.954 5.954 17 Si 0.949 3.051 18 H -0.256 1.256 19 H -0.294 1.294 20 H -0.238 1.238 21 C 0.071 3.929 22 H 0.065 0.935 23 C -0.132 4.132 24 H 0.058 0.942 25 H 0.060 0.940 26 H 0.064 0.936 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.027 0.973 34 H 0.062 0.938 35 H 0.265 0.735 36 H 0.045 0.955 37 H 0.075 0.925 38 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.947 8.065 -3.548 23.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.113 4.113 3 H 0.093 0.907 4 C -0.168 4.168 5 C -0.094 4.094 6 N -0.274 5.274 7 C -0.063 4.063 8 C 0.005 3.995 9 H 0.127 0.873 10 C -0.052 4.052 11 N -0.194 5.194 12 C -0.041 4.041 13 C -0.570 4.570 14 H 0.045 0.955 15 C -0.193 4.193 16 N -0.595 5.595 17 Si 0.772 3.228 18 H -0.180 1.180 19 H -0.221 1.221 20 H -0.161 1.161 21 C -0.036 4.036 22 H 0.083 0.917 23 C -0.190 4.190 24 H 0.077 0.923 25 H 0.079 0.921 26 H 0.083 0.917 27 H 0.099 0.901 28 H 0.096 0.904 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.045 0.955 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.094 0.906 38 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -20.493 9.414 -2.475 22.687 hybrid contribution 0.084 -1.444 -0.148 1.454 sum -20.409 7.969 -2.623 22.066 Atomic orbital electron populations 1.21691 0.92948 1.02288 1.02400 1.22298 0.96596 0.98924 0.93438 0.90713 1.22814 0.95362 1.00329 0.98301 1.22902 0.98192 1.01435 0.86893 1.63434 1.28740 1.26489 1.08755 1.22269 0.92152 0.90616 1.01224 1.19062 0.91775 0.90156 0.98463 0.87285 1.29394 0.91781 0.91778 0.92223 1.80977 1.11997 1.14158 1.12230 1.19586 0.95485 0.91528 0.97522 1.21381 0.97426 0.99863 1.38300 0.95457 1.26039 0.96232 1.00857 0.96142 1.70091 1.16688 1.23241 1.49446 0.85681 0.79146 0.78580 0.79432 1.18009 1.22086 1.16140 1.22665 0.87929 0.97373 0.95668 0.91657 1.21677 1.01684 0.99119 0.96482 0.92261 0.92052 0.91684 0.90064 0.90358 0.91859 0.91603 0.90299 0.90321 0.95506 0.92009 0.92620 0.93616 0.90569 0.94079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 9.30 71.98 0.67 -0.97 16 2 C -0.09 -1.53 3.05 -9.41 -0.03 -1.56 16 3 H 0.07 1.35 8.06 -2.39 -0.02 1.33 16 4 C -0.13 -2.11 6.41 31.77 0.20 -1.91 16 5 C 0.03 0.73 6.14 86.65 0.53 1.26 16 6 N -0.55 -13.73 4.51 -860.66 -3.88 -17.62 16 7 C 0.07 1.76 3.90 86.30 0.34 2.10 16 8 C 0.03 0.97 2.18 -12.60 -0.03 0.94 16 9 H 0.11 3.76 7.04 -2.39 -0.02 3.74 16 10 C 0.26 11.33 13.67 89.44 1.22 12.55 16 11 N -0.52 -24.52 18.54 20.01 0.37 -24.15 16 12 C 0.00 -0.09 3.49 29.85 0.10 0.01 16 13 C -0.53 -29.23 9.15 25.60 0.23 -29.00 16 14 H 0.03 1.70 7.84 -2.91 -0.02 1.68 16 15 C 0.00 0.22 5.47 84.65 0.46 0.69 16 16 N -0.95 -59.57 13.96 21.45 0.30 -59.27 16 17 Si 0.95 41.76 27.47 68.60 1.88 43.65 16 18 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 19 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 20 H -0.24 -9.43 6.54 99.48 0.65 -8.78 16 21 C 0.07 1.42 2.48 45.38 0.11 1.53 16 22 H 0.07 1.19 7.67 -2.38 -0.02 1.17 16 23 C -0.13 -2.72 9.59 71.98 0.69 -2.03 16 24 H 0.06 0.68 8.10 -2.38 -0.02 0.66 16 25 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.08 1.13 8.04 -2.39 -0.02 1.11 16 29 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.07 1.40 6.94 -2.39 -0.02 1.39 16 31 H 0.08 1.71 7.96 -2.39 -0.02 1.70 16 32 H 0.08 2.08 8.07 -2.39 -0.02 2.06 16 33 H 0.03 1.11 7.20 -2.39 -0.02 1.10 16 34 H 0.06 2.24 7.57 -2.39 -0.02 2.22 16 35 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 36 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -68.93 309.85 4.14 -64.79 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: 0.95 Total: 8.96 kcal Atomic # 6 Polarization: -20.89 SS G_CDS: 4.51 Total: -16.37 kcal Atomic # 7 Polarization: -97.82 SS G_CDS: -3.21 Total: -101.03 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 1.88 Total: 43.65 kcal Total: -68.93 4.14 -64.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000247409685.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.250 kcal (2) G-P(sol) polarization free energy of solvation -68.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds