Wall clock time and date at job start Sun Mar 29 2020 21:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 110.27645 * 2 1 4 4 C 1.54597 * 110.30546 * 237.91518 * 2 1 3 5 5 C 1.54934 * 102.92105 * 219.12696 * 4 2 1 6 6 N 1.48529 * 103.22912 * 37.41269 * 5 4 2 7 7 C 1.46900 * 111.00554 * 200.27949 * 6 5 4 8 8 C 1.53004 * 109.46735 * 307.39673 * 7 6 5 9 9 H 1.08993 * 109.47432 * 304.99898 * 8 7 6 10 10 C 1.47200 * 109.47252 * 65.00178 * 8 7 6 11 11 N 5.06236 * 149.92143 * 209.82242 * 2 1 3 12 12 C 1.53008 * 109.46628 * 184.99520 * 8 7 6 13 13 C 1.50702 * 109.46794 * 175.00170 * 12 8 7 14 14 H 1.07996 * 119.99925 * 0.02562 * 13 12 8 15 15 C 1.37874 * 119.99751 * 180.02562 * 13 12 8 16 16 N 1.31512 * 119.99641 * 180.02562 * 15 13 12 17 17 Si 1.86797 * 120.00376 * 359.97438 * 15 13 12 18 18 H 1.48498 * 109.47123 * 90.00260 * 17 15 13 19 19 H 1.48499 * 109.47278 * 210.00636 * 17 15 13 20 20 H 1.48508 * 109.47082 * 330.00627 * 17 15 13 21 21 C 1.47907 * 105.81986 * 320.79425 * 6 5 4 22 22 H 1.08996 * 109.91720 * 265.97045 * 21 6 5 23 23 C 1.52996 * 109.91478 * 144.67995 * 21 6 5 24 24 H 1.08990 * 109.47300 * 180.63456 * 1 2 3 25 25 H 1.08999 * 109.46864 * 300.63207 * 1 2 3 26 26 H 1.08998 * 109.47178 * 60.62874 * 1 2 3 27 27 H 1.09000 * 110.72471 * 337.48095 * 4 2 1 28 28 H 1.09001 * 110.72634 * 100.77115 * 4 2 1 29 29 H 1.09002 * 110.66845 * 155.85307 * 5 4 2 30 30 H 1.08999 * 110.67017 * 278.97874 * 5 4 2 31 31 H 1.08999 * 109.47137 * 67.39530 * 7 6 5 32 32 H 1.09001 * 109.47366 * 187.39626 * 7 6 5 33 33 H 1.08996 * 109.47396 * 295.00404 * 12 8 7 34 34 H 1.08996 * 109.46689 * 55.00229 * 12 8 7 35 35 H 0.97003 * 120.00242 * 179.97438 * 16 15 13 36 36 H 1.09001 * 109.47529 * 302.40535 * 23 21 6 37 37 H 1.08997 * 109.47664 * 62.41232 * 23 21 6 38 38 H 1.09002 * 109.47196 * 182.41410 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0665 -0.7701 -1.2284 5 6 3.2854 -1.5342 -0.6531 6 7 2.8313 -1.9243 0.7062 7 6 3.9751 -2.2279 1.5766 8 6 4.8799 -3.2534 0.8905 9 1 4.2939 -4.1319 0.6206 10 6 5.4617 -2.6595 -0.3243 11 7 5.9106 -2.2012 -1.2618 12 6 6.0026 -3.6628 1.8460 13 6 6.8211 -4.7613 1.2179 14 1 6.5662 -5.1301 0.2353 15 6 7.8952 -5.2954 1.8976 16 7 8.6097 -6.2536 1.3492 17 14 8.3364 -4.6569 3.5967 18 1 7.6113 -5.4452 4.6253 19 1 9.7997 -4.7905 3.8112 20 1 7.9487 -3.2274 3.7044 21 6 2.0645 -0.7695 1.2221 22 1 2.7162 -0.1244 1.8112 23 6 0.8970 -1.2606 2.0802 24 1 -0.3633 -1.0275 0.0114 25 1 -0.3633 0.5236 0.8843 26 1 -0.3633 0.5040 -0.8955 27 1 1.3171 -1.4667 -1.6044 28 1 2.3790 -0.0787 -2.0109 29 1 3.5045 -2.4170 -1.2537 30 1 4.1563 -0.8813 -0.5951 31 1 4.5395 -1.3149 1.7665 32 1 3.6148 -2.6355 2.5211 33 1 6.6414 -2.8026 2.0459 34 1 5.5714 -4.0203 2.7811 35 1 9.3657 -6.6291 1.8272 36 1 0.2636 -1.9214 1.4883 37 1 1.2831 -1.8040 2.9426 38 1 0.3121 -0.4063 2.4212 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000247410289.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:30 Heat of formation + Delta-G solvation = 25.900018 kcal Electronic energy + Delta-G solvation = -17026.962757 eV Core-core repulsion = 14483.320659 eV Total energy + Delta-G solvation = -2543.642097 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.81674 -36.80191 -34.27252 -33.10132 -31.63339 -31.14593 -27.97406 -26.08976 -24.80013 -23.29818 -21.58059 -20.72202 -18.99563 -17.09969 -16.86797 -16.07795 -15.30887 -14.68873 -14.28415 -14.01115 -13.94965 -13.40115 -13.15381 -12.69102 -12.53036 -12.46662 -12.15034 -12.05919 -11.67622 -11.53248 -11.39415 -11.22930 -10.96939 -10.78063 -10.62377 -10.51249 -10.45153 -10.39786 -9.92026 -9.70812 -9.32233 -8.61695 -8.32400 -6.10670 -4.11298 3.25839 3.34578 3.35484 3.51591 3.56200 4.01232 4.38280 4.50946 4.63162 4.72611 4.79784 5.22391 5.24047 5.30153 5.31942 5.40120 5.42204 5.55331 5.63598 5.68025 5.77137 5.80394 5.90335 5.96776 5.99446 6.07850 6.13071 6.20868 6.23607 6.32047 6.39710 6.92116 6.99320 7.09740 7.18691 7.63625 8.33109 8.42374 8.92718 9.49205 11.02489 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.039445 B = 0.005896 C = 0.005368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.681179 B = 4747.695628 C = 5214.769046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.100 4.100 3 H 0.070 0.930 4 C -0.119 4.119 5 C 0.025 3.975 6 N -0.511 5.511 7 C 0.053 3.947 8 C 0.014 3.986 9 H 0.115 0.885 10 C 0.245 3.755 11 N -0.473 5.473 12 C -0.004 4.004 13 C -0.528 4.528 14 H 0.074 0.926 15 C 0.071 3.929 16 N -0.897 5.897 17 Si 0.877 3.123 18 H -0.274 1.274 19 H -0.287 1.287 20 H -0.265 1.265 21 C 0.064 3.936 22 H 0.051 0.949 23 C -0.135 4.135 24 H 0.064 0.936 25 H 0.055 0.945 26 H 0.049 0.951 27 H 0.075 0.925 28 H 0.067 0.933 29 H 0.086 0.914 30 H 0.050 0.950 31 H 0.039 0.961 32 H 0.094 0.906 33 H 0.023 0.977 34 H 0.035 0.965 35 H 0.265 0.735 36 H 0.066 0.934 37 H 0.053 0.947 38 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.103 11.543 1.948 19.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.119 4.119 3 H 0.088 0.912 4 C -0.157 4.157 5 C -0.102 4.102 6 N -0.236 5.236 7 C -0.077 4.077 8 C -0.007 4.007 9 H 0.133 0.867 10 C -0.071 4.071 11 N -0.150 5.150 12 C -0.043 4.043 13 C -0.566 4.566 14 H 0.092 0.908 15 C -0.131 4.131 16 N -0.535 5.535 17 Si 0.704 3.296 18 H -0.199 1.199 19 H -0.213 1.213 20 H -0.189 1.189 21 C -0.045 4.045 22 H 0.069 0.931 23 C -0.192 4.192 24 H 0.083 0.917 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.093 0.907 28 H 0.085 0.915 29 H 0.104 0.896 30 H 0.068 0.932 31 H 0.057 0.943 32 H 0.113 0.887 33 H 0.041 0.959 34 H 0.053 0.947 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.072 0.928 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -15.578 11.637 0.556 19.452 hybrid contribution 0.942 0.679 1.285 1.732 sum -14.637 12.316 1.841 19.217 Atomic orbital electron populations 1.21921 0.94535 1.02267 1.01122 1.22015 0.96393 0.98743 0.94753 0.91159 1.22586 0.97637 0.98653 0.96806 1.23610 0.96472 0.99379 0.90787 1.64839 1.20959 1.35666 1.02097 1.22454 0.90344 0.97940 0.96917 1.19097 0.96730 0.97095 0.87824 0.86695 1.28930 0.91635 0.92401 0.94101 1.81076 1.11050 1.10722 1.12141 1.19627 0.92652 0.97601 0.94403 1.21025 1.12528 1.18165 1.04832 0.90803 1.24985 0.95750 0.94464 0.97876 1.69906 1.19018 1.26278 1.38316 0.86818 0.77826 0.80048 0.84874 1.19946 1.21318 1.18936 1.22433 0.95645 0.90986 0.95425 0.93141 1.21839 0.97412 1.00798 0.99201 0.91726 0.92556 0.93194 0.90677 0.91473 0.89624 0.93215 0.94269 0.88733 0.95894 0.94689 0.92562 0.91549 0.92808 0.92605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 7.91 37.16 0.29 -0.91 16 2 C -0.10 -1.04 3.59 -89.27 -0.32 -1.36 16 3 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 4 C -0.12 -1.39 6.61 -24.87 -0.16 -1.55 16 5 C 0.03 0.37 4.35 -1.90 -0.01 0.36 16 6 N -0.51 -7.00 5.03 -222.58 -1.12 -8.12 16 7 C 0.05 0.77 4.71 -3.82 -0.02 0.75 16 8 C 0.01 0.26 2.29 -93.40 -0.21 0.05 16 9 H 0.12 2.05 8.14 -51.93 -0.42 1.63 16 10 C 0.25 4.97 9.68 -20.76 -0.20 4.77 16 11 N -0.47 -10.27 17.37 42.16 0.73 -9.54 16 12 C 0.00 -0.08 3.49 -27.88 -0.10 -0.18 16 13 C -0.53 -14.33 9.15 -34.44 -0.32 -14.64 16 14 H 0.07 2.20 7.84 -52.49 -0.41 1.79 16 15 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 16 N -0.90 -27.21 13.96 55.43 0.77 -26.43 16 17 Si 0.88 20.75 27.47 -169.99 -4.67 16.08 16 18 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 19 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.26 -5.95 6.54 56.52 0.37 -5.58 16 21 C 0.06 0.73 3.08 -66.64 -0.21 0.52 16 22 H 0.05 0.59 7.57 -51.93 -0.39 0.20 16 23 C -0.13 -1.32 8.36 37.16 0.31 -1.01 16 24 H 0.06 0.57 6.62 -51.93 -0.34 0.22 16 25 H 0.06 0.43 6.90 -51.93 -0.36 0.07 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.07 0.85 7.86 -51.93 -0.41 0.44 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.09 1.38 6.52 -51.93 -0.34 1.05 16 30 H 0.05 0.81 6.33 -51.93 -0.33 0.48 16 31 H 0.04 0.58 7.81 -51.93 -0.41 0.17 16 32 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.02 0.51 7.20 -51.93 -0.37 0.13 16 34 H 0.03 0.71 7.57 -51.93 -0.39 0.31 16 35 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 36 H 0.07 0.66 6.64 -51.93 -0.34 0.32 16 37 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.46 6.87 -51.93 -0.36 0.10 16 LS Contribution 296.15 15.07 4.46 4.46 Total: -1.00 -30.13 296.15 -7.01 -37.15 By element: Atomic # 1 Polarization: 3.84 SS G_CDS: -6.16 Total: -2.32 kcal Atomic # 6 Polarization: -10.24 SS G_CDS: -1.04 Total: -11.28 kcal Atomic # 7 Polarization: -44.48 SS G_CDS: 0.39 Total: -44.10 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.67 Total: 16.08 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -30.13 -7.01 -37.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000247410289.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.048 kcal (2) G-P(sol) polarization free energy of solvation -30.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds