Wall clock time and date at job start Sun Mar 29 2020 21:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 110.27645 * 2 1 4 4 C 1.54597 * 110.30546 * 237.91518 * 2 1 3 5 5 C 1.54934 * 102.92105 * 219.12696 * 4 2 1 6 6 N 1.48529 * 103.22912 * 37.41269 * 5 4 2 7 7 C 1.46900 * 111.00554 * 200.27949 * 6 5 4 8 8 C 1.53004 * 109.46735 * 307.39673 * 7 6 5 9 9 H 1.08993 * 109.47432 * 304.99898 * 8 7 6 10 10 C 1.47200 * 109.47252 * 65.00178 * 8 7 6 11 11 N 5.06236 * 149.92143 * 209.82242 * 2 1 3 12 12 C 1.53008 * 109.46628 * 184.99520 * 8 7 6 13 13 C 1.50702 * 109.46794 * 175.00170 * 12 8 7 14 14 H 1.07996 * 119.99925 * 0.02562 * 13 12 8 15 15 C 1.37874 * 119.99751 * 180.02562 * 13 12 8 16 16 N 1.31512 * 119.99641 * 180.02562 * 15 13 12 17 17 Si 1.86797 * 120.00376 * 359.97438 * 15 13 12 18 18 H 1.48498 * 109.47123 * 90.00260 * 17 15 13 19 19 H 1.48499 * 109.47278 * 210.00636 * 17 15 13 20 20 H 1.48508 * 109.47082 * 330.00627 * 17 15 13 21 21 C 1.47907 * 105.81986 * 320.79425 * 6 5 4 22 22 H 1.08996 * 109.91720 * 265.97045 * 21 6 5 23 23 C 1.52996 * 109.91478 * 144.67995 * 21 6 5 24 24 H 1.08990 * 109.47300 * 180.63456 * 1 2 3 25 25 H 1.08999 * 109.46864 * 300.63207 * 1 2 3 26 26 H 1.08998 * 109.47178 * 60.62874 * 1 2 3 27 27 H 1.09000 * 110.72471 * 337.48095 * 4 2 1 28 28 H 1.09001 * 110.72634 * 100.77115 * 4 2 1 29 29 H 1.09002 * 110.66845 * 155.85307 * 5 4 2 30 30 H 1.08999 * 110.67017 * 278.97874 * 5 4 2 31 31 H 1.08999 * 109.47137 * 67.39530 * 7 6 5 32 32 H 1.09001 * 109.47366 * 187.39626 * 7 6 5 33 33 H 1.08996 * 109.47396 * 295.00404 * 12 8 7 34 34 H 1.08996 * 109.46689 * 55.00229 * 12 8 7 35 35 H 0.97003 * 120.00242 * 179.97438 * 16 15 13 36 36 H 1.09001 * 109.47529 * 302.40535 * 23 21 6 37 37 H 1.08997 * 109.47664 * 62.41232 * 23 21 6 38 38 H 1.09002 * 109.47196 * 182.41410 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0665 -0.7701 -1.2284 5 6 3.2854 -1.5342 -0.6531 6 7 2.8313 -1.9243 0.7062 7 6 3.9751 -2.2279 1.5766 8 6 4.8799 -3.2534 0.8905 9 1 4.2939 -4.1319 0.6206 10 6 5.4617 -2.6595 -0.3243 11 7 5.9106 -2.2012 -1.2618 12 6 6.0026 -3.6628 1.8460 13 6 6.8211 -4.7613 1.2179 14 1 6.5662 -5.1301 0.2353 15 6 7.8952 -5.2954 1.8976 16 7 8.6097 -6.2536 1.3492 17 14 8.3364 -4.6569 3.5967 18 1 7.6113 -5.4452 4.6253 19 1 9.7997 -4.7905 3.8112 20 1 7.9487 -3.2274 3.7044 21 6 2.0645 -0.7695 1.2221 22 1 2.7162 -0.1244 1.8112 23 6 0.8970 -1.2606 2.0802 24 1 -0.3633 -1.0275 0.0114 25 1 -0.3633 0.5236 0.8843 26 1 -0.3633 0.5040 -0.8955 27 1 1.3171 -1.4667 -1.6044 28 1 2.3790 -0.0787 -2.0109 29 1 3.5045 -2.4170 -1.2537 30 1 4.1563 -0.8813 -0.5951 31 1 4.5395 -1.3149 1.7665 32 1 3.6148 -2.6355 2.5211 33 1 6.6414 -2.8026 2.0459 34 1 5.5714 -4.0203 2.7811 35 1 9.3657 -6.6291 1.8272 36 1 0.2636 -1.9214 1.4883 37 1 1.2831 -1.8040 2.9426 38 1 0.3121 -0.4063 2.4212 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000247410289.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:30 Heat of formation + Delta-G solvation = 6.434495 kcal Electronic energy + Delta-G solvation = -17027.806845 eV Core-core repulsion = 14483.320659 eV Total energy + Delta-G solvation = -2544.486186 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.88337 -38.23411 -35.87186 -34.74069 -33.08793 -32.20469 -29.34320 -27.35787 -25.70275 -24.54088 -23.36738 -21.86354 -19.86566 -18.93140 -18.51060 -17.24910 -16.54832 -16.04878 -15.70877 -15.26486 -14.87164 -14.77368 -14.62730 -14.33272 -14.01278 -13.75951 -13.24652 -13.16693 -13.13447 -12.82019 -12.48862 -12.36980 -12.24155 -12.19257 -12.03572 -11.69258 -11.52921 -11.50425 -11.40716 -11.28265 -11.19723 -10.74279 -9.40497 -8.26091 -6.32101 1.41740 1.44422 1.54733 1.89719 1.92013 2.39963 2.94718 3.09201 3.18530 3.60673 3.71054 3.94219 4.11758 4.23493 4.31840 4.44817 4.48740 4.58136 4.64706 4.75342 4.77251 4.82103 4.89321 4.96883 5.00898 5.06057 5.14399 5.20457 5.27346 5.31880 5.41286 5.42367 5.60930 5.63098 5.93851 6.11325 6.24907 6.70652 6.77360 7.32455 8.90994 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.039445 B = 0.005896 C = 0.005368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.681179 B = 4747.695628 C = 5214.769046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.097 4.097 3 H 0.075 0.925 4 C -0.115 4.115 5 C 0.025 3.975 6 N -0.514 5.514 7 C 0.061 3.939 8 C 0.020 3.980 9 H 0.116 0.884 10 C 0.253 3.747 11 N -0.507 5.507 12 C -0.001 4.001 13 C -0.533 4.533 14 H 0.027 0.973 15 C 0.004 3.996 16 N -0.954 5.954 17 Si 0.950 3.050 18 H -0.255 1.255 19 H -0.294 1.294 20 H -0.239 1.239 21 C 0.059 3.941 22 H 0.052 0.948 23 C -0.130 4.130 24 H 0.061 0.939 25 H 0.070 0.930 26 H 0.056 0.944 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.061 0.939 30 H 0.030 0.970 31 H 0.042 0.958 32 H 0.120 0.880 33 H 0.025 0.975 34 H 0.064 0.936 35 H 0.265 0.735 36 H 0.063 0.937 37 H 0.053 0.947 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.066 13.343 4.337 22.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.116 4.116 3 H 0.093 0.907 4 C -0.153 4.153 5 C -0.104 4.104 6 N -0.238 5.238 7 C -0.068 4.068 8 C -0.002 4.002 9 H 0.134 0.866 10 C -0.062 4.062 11 N -0.184 5.184 12 C -0.040 4.040 13 C -0.570 4.570 14 H 0.046 0.954 15 C -0.193 4.193 16 N -0.594 5.594 17 Si 0.772 3.228 18 H -0.179 1.179 19 H -0.221 1.221 20 H -0.162 1.162 21 C -0.049 4.049 22 H 0.070 0.930 23 C -0.188 4.188 24 H 0.080 0.920 25 H 0.089 0.911 26 H 0.075 0.925 27 H 0.097 0.903 28 H 0.089 0.911 29 H 0.079 0.921 30 H 0.048 0.952 31 H 0.060 0.940 32 H 0.138 0.862 33 H 0.043 0.957 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.072 0.928 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -17.578 13.456 2.943 22.331 hybrid contribution 1.536 0.078 0.418 1.594 sum -16.041 13.534 3.360 21.255 Atomic orbital electron populations 1.21885 0.92819 1.02448 1.02197 1.22032 0.97777 0.98509 0.93287 0.90654 1.22578 0.96470 0.98679 0.97612 1.23471 0.97079 0.98250 0.91554 1.64866 1.20381 1.37066 1.01529 1.22394 0.90115 0.96920 0.97356 1.19134 0.96252 0.98320 0.86467 0.86606 1.29446 0.90914 0.91632 0.94243 1.81059 1.12145 1.12091 1.13138 1.19567 0.93026 0.95608 0.95757 1.21375 1.13199 1.19268 1.03209 0.95441 1.26039 0.95678 0.94629 1.02920 1.70088 1.20119 1.28523 1.40710 0.85670 0.77155 0.80880 0.79063 1.17938 1.22065 1.16232 1.22580 0.95955 0.90264 0.96075 0.92985 1.21821 0.96729 1.01528 0.98685 0.91973 0.91122 0.92531 0.90302 0.91139 0.92062 0.95220 0.93978 0.86224 0.95656 0.91778 0.92595 0.91802 0.92836 0.90630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 7.91 71.98 0.57 -1.32 16 2 C -0.10 -1.77 3.59 -9.92 -0.04 -1.81 16 3 H 0.08 1.31 8.14 -2.38 -0.02 1.30 16 4 C -0.12 -2.56 6.61 31.80 0.21 -2.35 16 5 C 0.02 0.71 4.35 86.65 0.38 1.09 16 6 N -0.51 -13.13 5.03 -858.10 -4.31 -17.45 16 7 C 0.06 1.65 4.71 86.30 0.41 2.05 16 8 C 0.02 0.71 2.29 -12.60 -0.03 0.68 16 9 H 0.12 4.10 8.14 -2.39 -0.02 4.08 16 10 C 0.25 10.41 9.68 89.44 0.87 11.28 16 11 N -0.51 -22.66 17.37 20.01 0.35 -22.31 16 12 C 0.00 -0.03 3.49 29.85 0.10 0.08 16 13 C -0.53 -29.31 9.15 25.60 0.23 -29.07 16 14 H 0.03 1.71 7.84 -2.91 -0.02 1.69 16 15 C 0.00 0.23 5.47 84.65 0.46 0.69 16 16 N -0.95 -59.58 13.96 21.45 0.30 -59.28 16 17 Si 0.95 41.85 27.47 68.60 1.88 43.74 16 18 H -0.26 -10.43 7.11 99.48 0.71 -9.73 16 19 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 20 H -0.24 -9.48 6.54 99.48 0.65 -8.83 16 21 C 0.06 1.19 3.08 45.05 0.14 1.33 16 22 H 0.05 1.05 7.57 -2.39 -0.02 1.03 16 23 C -0.13 -2.09 8.36 71.98 0.60 -1.48 16 24 H 0.06 0.91 6.62 -2.39 -0.02 0.89 16 25 H 0.07 0.79 6.90 -2.39 -0.02 0.78 16 26 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.08 1.68 7.86 -2.39 -0.02 1.66 16 28 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.06 2.03 6.52 -2.39 -0.02 2.02 16 30 H 0.03 0.97 6.33 -2.39 -0.02 0.95 16 31 H 0.04 1.12 7.81 -2.39 -0.02 1.11 16 32 H 0.12 2.66 8.14 -2.39 -0.02 2.64 16 33 H 0.03 1.05 7.20 -2.39 -0.02 1.03 16 34 H 0.06 2.35 7.57 -2.39 -0.02 2.33 16 35 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 36 H 0.06 1.07 6.64 -2.39 -0.02 1.06 16 37 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.07 0.93 6.87 -2.39 -0.02 0.91 16 Total: -1.00 -67.10 296.15 3.09 -64.01 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: 0.97 Total: 10.13 kcal Atomic # 6 Polarization: -22.74 SS G_CDS: 3.91 Total: -18.83 kcal Atomic # 7 Polarization: -95.37 SS G_CDS: -3.67 Total: -99.04 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 1.88 Total: 43.74 kcal Total: -67.10 3.09 -64.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000247410289.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.443 kcal (2) G-P(sol) polarization free energy of solvation -67.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds