Wall clock time and date at job start Sun Mar 29 2020 21:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.50342 * 2 1 4 4 C 1.53118 * 109.50029 * 120.07573 * 2 1 3 5 5 C 1.53123 * 109.15717 * 177.59137 * 4 2 1 6 6 C 1.53033 * 109.28339 * 302.34906 * 5 4 2 7 7 N 1.46851 * 109.52104 * 59.17733 * 6 5 4 8 8 C 1.46907 * 110.99669 * 174.15960 * 7 6 5 9 9 C 1.53003 * 109.46828 * 176.32736 * 8 7 6 10 10 H 1.09003 * 109.46883 * 301.93992 * 9 8 7 11 11 C 1.47203 * 109.46999 * 61.94106 * 9 8 7 12 12 N 4.81276 * 121.75659 * 298.34402 * 2 1 3 13 13 C 1.52997 * 109.47077 * 181.93900 * 9 8 7 14 14 C 1.50698 * 109.47303 * 174.99944 * 13 9 8 15 15 H 1.08005 * 119.99757 * 0.02562 * 14 13 9 16 16 C 1.37875 * 120.00230 * 179.97438 * 14 13 9 17 17 N 1.31513 * 119.99756 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00027 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.46947 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47007 * 120.00215 * 18 16 14 21 21 H 1.48504 * 109.46830 * 239.99774 * 18 16 14 22 22 C 1.46844 * 111.19769 * 298.25838 * 7 6 5 23 23 H 1.08995 * 109.47115 * 299.92360 * 1 2 3 24 24 H 1.09007 * 109.47053 * 59.92351 * 1 2 3 25 25 H 1.08994 * 109.47184 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.52340 * 57.69529 * 4 2 1 27 27 H 1.08997 * 109.58037 * 297.53209 * 4 2 1 28 28 H 1.09003 * 109.50031 * 182.40338 * 5 4 2 29 29 H 1.09003 * 109.53110 * 62.31195 * 5 4 2 30 30 H 1.08997 * 109.46378 * 299.16230 * 6 5 4 31 31 H 1.08995 * 109.45485 * 179.18885 * 6 5 4 32 32 H 1.08993 * 109.47105 * 296.32906 * 8 7 6 33 33 H 1.08995 * 109.46823 * 56.33433 * 8 7 6 34 34 H 1.09004 * 109.47358 * 295.00269 * 13 9 8 35 35 H 1.09000 * 109.47092 * 54.99768 * 13 9 8 36 36 H 0.97005 * 119.99819 * 180.02562 * 17 16 14 37 37 H 1.09003 * 109.46063 * 181.75845 * 22 7 6 38 38 H 1.08997 * 109.46417 * 301.72532 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0411 -0.7233 1.2490 5 6 3.5711 -0.7715 1.2110 6 6 4.0229 -1.4730 -0.0719 7 7 3.5092 -0.7425 -1.2376 8 6 4.0373 -1.3068 -2.4870 9 6 3.4105 -0.5810 -3.6792 10 1 2.3257 -0.6774 -3.6339 11 6 3.7789 0.8435 -3.6354 12 7 4.0630 1.9429 -3.6016 13 6 3.9237 -1.2007 -4.9806 14 6 3.2149 -0.5695 -6.1512 15 1 2.4730 0.1973 -5.9837 16 6 3.5143 -0.9701 -7.4360 17 7 4.4182 -1.9035 -7.6400 18 14 2.6363 -0.1872 -8.8871 19 1 1.6721 0.8283 -8.3929 20 1 3.6320 0.4654 -9.7747 21 1 1.9064 -1.2336 -9.6471 22 6 2.0409 -0.7239 -1.2478 23 1 -0.3633 0.5126 0.8906 24 1 -0.3633 0.5151 -0.8894 25 1 -0.3633 -1.0276 -0.0005 26 1 1.6452 -1.7386 1.2696 27 1 1.7156 -0.1873 2.1405 28 1 3.9394 -1.3227 2.0763 29 1 3.9683 0.2434 1.2300 30 1 3.6375 -2.4925 -0.0834 31 1 5.1120 -1.4961 -0.1087 32 1 5.1197 -1.1813 -2.5133 33 1 3.7930 -2.3678 -2.5382 34 1 4.9961 -1.0262 -5.0681 35 1 3.7295 -2.2732 -4.9736 36 1 4.6291 -2.1851 -8.5440 37 1 1.6905 -0.2030 -2.1389 38 1 1.6648 -1.7469 -1.2538 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000249525741.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:23 Heat of formation + Delta-G solvation = 1.484339 kcal Electronic energy + Delta-G solvation = -16880.265549 eV Core-core repulsion = 14335.564708 eV Total energy + Delta-G solvation = -2544.700841 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.32530 -36.50304 -34.39008 -33.34391 -32.21616 -30.87090 -26.94679 -26.65504 -24.58539 -22.40745 -21.48722 -21.38378 -19.64976 -16.67440 -16.52612 -15.70045 -14.92818 -14.55547 -14.48164 -14.32614 -14.05641 -13.32548 -12.96409 -12.69123 -12.56550 -12.24446 -12.14454 -11.84990 -11.80532 -11.47105 -11.20343 -11.06724 -10.98815 -10.71348 -10.61154 -10.53818 -10.40910 -10.29863 -9.93244 -9.52459 -9.18546 -8.45848 -8.10894 -6.09540 -4.12593 3.28513 3.36776 3.41423 3.75215 3.84135 4.03437 4.41507 4.72712 4.83901 4.86894 4.94160 5.11525 5.28717 5.37133 5.46777 5.52940 5.57218 5.60939 5.62176 5.76886 5.78735 5.82666 5.90647 5.99983 6.08283 6.12492 6.14992 6.25106 6.41652 6.44583 6.53042 7.25521 7.28020 7.43281 7.53433 7.85880 8.23442 8.60129 8.92314 9.52935 11.01444 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.034158 B = 0.005616 C = 0.005358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.518022 B = 4984.504311 C = 5224.308812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 H 0.076 0.924 4 C -0.114 4.114 5 C -0.117 4.117 6 C 0.056 3.944 7 N -0.542 5.542 8 C 0.063 3.937 9 C 0.005 3.995 10 H 0.101 0.899 11 C 0.255 3.745 12 N -0.477 5.477 13 C 0.031 3.969 14 C -0.525 4.525 15 H 0.057 0.943 16 C 0.062 3.938 17 N -0.892 5.892 18 Si 0.891 3.109 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.283 1.283 22 C 0.052 3.948 23 H 0.053 0.947 24 H 0.057 0.943 25 H 0.053 0.947 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.032 0.968 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.051 0.949 34 H 0.027 0.973 35 H 0.037 0.963 36 H 0.262 0.738 37 H 0.082 0.918 38 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.852 -2.207 16.228 17.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.109 4.109 3 H 0.095 0.905 4 C -0.152 4.152 5 C -0.154 4.154 6 C -0.071 4.071 7 N -0.266 5.266 8 C -0.065 4.065 9 C -0.017 4.017 10 H 0.119 0.881 11 C -0.062 4.062 12 N -0.154 5.154 13 C -0.008 4.008 14 C -0.563 4.563 15 H 0.075 0.925 16 C -0.140 4.140 17 N -0.530 5.530 18 Si 0.719 3.281 19 H -0.197 1.197 20 H -0.209 1.209 21 H -0.209 1.209 22 C -0.075 4.075 23 H 0.072 0.928 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.050 0.950 31 H 0.091 0.909 32 H 0.099 0.901 33 H 0.069 0.931 34 H 0.045 0.955 35 H 0.055 0.945 36 H 0.071 0.929 37 H 0.101 0.899 38 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -4.169 -0.167 16.179 16.708 hybrid contribution -0.776 -0.911 -1.047 1.590 sum -4.945 -1.078 15.131 15.955 Atomic orbital electron populations 1.21794 0.95156 1.01700 1.01756 1.21164 0.94961 1.00404 0.94379 0.90537 1.21633 0.95661 1.00284 0.97612 1.21576 0.95787 1.01534 0.96548 1.22044 0.99919 0.94837 0.90349 1.61973 1.08017 1.54353 1.02292 1.22228 1.00372 0.96705 0.87217 1.19345 1.01526 0.82904 0.97916 0.88138 1.28811 0.92360 0.94574 0.90419 1.80973 1.09925 1.13164 1.11360 1.19177 0.97309 0.96463 0.87806 1.21175 1.22619 1.21577 0.90955 0.92481 1.24952 0.95063 0.94936 0.99020 1.69951 1.32047 1.29588 1.21446 0.86539 0.79687 0.79311 0.82574 1.19670 1.20941 1.20862 1.22267 0.87533 0.99071 0.98654 0.92779 0.92398 0.92792 0.92367 0.92203 0.91877 0.91246 0.94966 0.90874 0.90080 0.93072 0.95509 0.94470 0.92856 0.89945 0.94684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.20 37.16 0.34 -1.10 16 2 C -0.09 -1.03 2.88 -90.54 -0.26 -1.29 16 3 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 4 C -0.11 -1.14 5.29 -26.61 -0.14 -1.28 16 5 C -0.12 -1.20 6.09 -26.65 -0.16 -1.36 16 6 C 0.06 0.66 5.46 -3.83 -0.02 0.64 16 7 N -0.54 -7.66 4.38 -234.67 -1.03 -8.68 16 8 C 0.06 0.98 4.52 -3.82 -0.02 0.96 16 9 C 0.00 0.09 1.75 -93.41 -0.16 -0.07 16 10 H 0.10 1.78 6.07 -51.93 -0.32 1.47 16 11 C 0.26 5.43 13.46 -20.76 -0.28 5.15 16 12 N -0.48 -11.00 18.54 42.15 0.78 -10.22 16 13 C 0.03 0.73 4.42 -27.89 -0.12 0.60 16 14 C -0.53 -14.06 8.60 -34.44 -0.30 -14.36 16 15 H 0.06 1.53 7.59 -52.48 -0.40 1.13 16 16 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 17 N -0.89 -25.62 13.29 55.43 0.74 -24.88 16 18 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 19 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 C 0.05 0.69 4.32 -3.84 -0.02 0.67 16 23 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.83 8.12 -51.93 -0.42 0.41 16 32 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 37 H 0.08 1.19 5.71 -51.93 -0.30 0.89 16 38 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 308.30 15.07 4.65 4.65 Total: -1.00 -29.62 308.30 -7.61 -37.23 By element: Atomic # 1 Polarization: 1.85 SS G_CDS: -6.49 Total: -4.63 kcal Atomic # 6 Polarization: -8.57 SS G_CDS: -1.24 Total: -9.81 kcal Atomic # 7 Polarization: -44.27 SS G_CDS: 0.49 Total: -43.78 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -29.62 -7.61 -37.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249525741.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.713 kcal (2) G-P(sol) polarization free energy of solvation -29.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds