Wall clock time and date at job start Sun Mar 29 2020 21:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.50342 * 2 1 4 4 C 1.53118 * 109.50029 * 120.07573 * 2 1 3 5 5 C 1.53123 * 109.15717 * 177.59137 * 4 2 1 6 6 C 1.53033 * 109.28339 * 302.34906 * 5 4 2 7 7 N 1.46851 * 109.52104 * 59.17733 * 6 5 4 8 8 C 1.46907 * 110.99669 * 174.15960 * 7 6 5 9 9 C 1.53003 * 109.46828 * 176.32736 * 8 7 6 10 10 H 1.09003 * 109.46883 * 301.93992 * 9 8 7 11 11 C 1.47203 * 109.46999 * 61.94106 * 9 8 7 12 12 N 4.81276 * 121.75659 * 298.34402 * 2 1 3 13 13 C 1.52997 * 109.47077 * 181.93900 * 9 8 7 14 14 C 1.50698 * 109.47303 * 174.99944 * 13 9 8 15 15 H 1.08005 * 119.99757 * 0.02562 * 14 13 9 16 16 C 1.37875 * 120.00230 * 179.97438 * 14 13 9 17 17 N 1.31513 * 119.99756 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00027 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.46947 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47007 * 120.00215 * 18 16 14 21 21 H 1.48504 * 109.46830 * 239.99774 * 18 16 14 22 22 C 1.46844 * 111.19769 * 298.25838 * 7 6 5 23 23 H 1.08995 * 109.47115 * 299.92360 * 1 2 3 24 24 H 1.09007 * 109.47053 * 59.92351 * 1 2 3 25 25 H 1.08994 * 109.47184 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.52340 * 57.69529 * 4 2 1 27 27 H 1.08997 * 109.58037 * 297.53209 * 4 2 1 28 28 H 1.09003 * 109.50031 * 182.40338 * 5 4 2 29 29 H 1.09003 * 109.53110 * 62.31195 * 5 4 2 30 30 H 1.08997 * 109.46378 * 299.16230 * 6 5 4 31 31 H 1.08995 * 109.45485 * 179.18885 * 6 5 4 32 32 H 1.08993 * 109.47105 * 296.32906 * 8 7 6 33 33 H 1.08995 * 109.46823 * 56.33433 * 8 7 6 34 34 H 1.09004 * 109.47358 * 295.00269 * 13 9 8 35 35 H 1.09000 * 109.47092 * 54.99768 * 13 9 8 36 36 H 0.97005 * 119.99819 * 180.02562 * 17 16 14 37 37 H 1.09003 * 109.46063 * 181.75845 * 22 7 6 38 38 H 1.08997 * 109.46417 * 301.72532 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0411 -0.7233 1.2490 5 6 3.5711 -0.7715 1.2110 6 6 4.0229 -1.4730 -0.0719 7 7 3.5092 -0.7425 -1.2376 8 6 4.0373 -1.3068 -2.4870 9 6 3.4105 -0.5810 -3.6792 10 1 2.3257 -0.6774 -3.6339 11 6 3.7789 0.8435 -3.6354 12 7 4.0630 1.9429 -3.6016 13 6 3.9237 -1.2007 -4.9806 14 6 3.2149 -0.5695 -6.1512 15 1 2.4730 0.1973 -5.9837 16 6 3.5143 -0.9701 -7.4360 17 7 4.4182 -1.9035 -7.6400 18 14 2.6363 -0.1872 -8.8871 19 1 1.6721 0.8283 -8.3929 20 1 3.6320 0.4654 -9.7747 21 1 1.9064 -1.2336 -9.6471 22 6 2.0409 -0.7239 -1.2478 23 1 -0.3633 0.5126 0.8906 24 1 -0.3633 0.5151 -0.8894 25 1 -0.3633 -1.0276 -0.0005 26 1 1.6452 -1.7386 1.2696 27 1 1.7156 -0.1873 2.1405 28 1 3.9394 -1.3227 2.0763 29 1 3.9683 0.2434 1.2300 30 1 3.6375 -2.4925 -0.0834 31 1 5.1120 -1.4961 -0.1087 32 1 5.1197 -1.1813 -2.5133 33 1 3.7930 -2.3678 -2.5382 34 1 4.9961 -1.0262 -5.0681 35 1 3.7295 -2.2732 -4.9736 36 1 4.6291 -2.1851 -8.5440 37 1 1.6905 -0.2030 -2.1389 38 1 1.6648 -1.7469 -1.2538 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000249525741.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:23 Heat of formation + Delta-G solvation = -15.361769 kcal Electronic energy + Delta-G solvation = -16880.996051 eV Core-core repulsion = 14335.564708 eV Total energy + Delta-G solvation = -2545.431343 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.38854 -38.03330 -35.87766 -35.03385 -33.48014 -32.23331 -28.59789 -27.56380 -25.91810 -23.98704 -22.86087 -22.42081 -20.55373 -18.54933 -18.16942 -16.98421 -16.40519 -15.95072 -15.70221 -15.30835 -14.98535 -14.84311 -14.34726 -14.20364 -13.85411 -13.61285 -13.40807 -13.32710 -13.05636 -12.85244 -12.76770 -12.60789 -12.45364 -12.30059 -11.87563 -11.84463 -11.48692 -11.41744 -11.32316 -11.12903 -10.87500 -10.56280 -9.17334 -8.20541 -6.29000 1.38629 1.41639 1.52195 2.03750 2.11296 2.40796 2.95005 3.14975 3.33328 3.86215 3.91307 3.98933 4.16871 4.30644 4.34099 4.50277 4.56941 4.67535 4.69488 4.73923 4.82502 4.93190 4.94905 4.97080 5.01896 5.07010 5.17924 5.28791 5.34453 5.43625 5.44611 5.58085 5.59549 5.77640 6.11417 6.22287 6.27049 6.81300 6.90789 7.39749 8.90681 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.034158 B = 0.005616 C = 0.005358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.518022 B = 4984.504311 C = 5224.308812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.089 4.089 3 H 0.056 0.944 4 C -0.110 4.110 5 C -0.114 4.114 6 C 0.054 3.946 7 N -0.556 5.556 8 C 0.073 3.927 9 C 0.016 3.984 10 H 0.116 0.884 11 C 0.265 3.735 12 N -0.510 5.510 13 C 0.038 3.962 14 C -0.539 4.539 15 H 0.053 0.947 16 C 0.012 3.988 17 N -0.923 5.923 18 Si 0.949 3.051 19 H -0.270 1.270 20 H -0.284 1.284 21 H -0.272 1.272 22 C 0.051 3.949 23 H 0.065 0.935 24 H 0.049 0.951 25 H 0.062 0.938 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.085 0.915 29 H 0.055 0.945 30 H 0.043 0.957 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.067 0.933 34 H 0.002 0.998 35 H 0.035 0.965 36 H 0.264 0.736 37 H 0.064 0.936 38 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.886 -2.791 17.404 18.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.108 4.108 3 H 0.075 0.925 4 C -0.148 4.148 5 C -0.151 4.151 6 C -0.073 4.073 7 N -0.281 5.281 8 C -0.056 4.056 9 C -0.006 4.006 10 H 0.133 0.867 11 C -0.051 4.051 12 N -0.188 5.188 13 C -0.001 4.001 14 C -0.577 4.577 15 H 0.071 0.929 16 C -0.187 4.187 17 N -0.563 5.563 18 Si 0.775 3.225 19 H -0.194 1.194 20 H -0.211 1.211 21 H -0.197 1.197 22 C -0.077 4.077 23 H 0.085 0.915 24 H 0.068 0.932 25 H 0.081 0.919 26 H 0.086 0.914 27 H 0.091 0.909 28 H 0.103 0.897 29 H 0.074 0.926 30 H 0.061 0.939 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.085 0.915 34 H 0.020 0.980 35 H 0.053 0.947 36 H 0.073 0.927 37 H 0.083 0.917 38 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -5.212 -0.751 17.369 18.150 hybrid contribution -0.442 -0.727 -1.390 1.630 sum -5.653 -1.478 15.979 17.014 Atomic orbital electron populations 1.21767 0.93927 1.02363 1.01992 1.21142 0.95976 0.99210 0.94447 0.92540 1.21617 0.95271 1.00735 0.97147 1.21572 0.96118 1.00896 0.96549 1.22141 1.00075 0.95268 0.89840 1.61958 1.08740 1.55085 1.02317 1.22062 0.99862 0.96982 0.86705 1.19297 1.02458 0.81442 0.97359 0.86657 1.29280 0.91411 0.94969 0.89433 1.80965 1.11122 1.14257 1.12448 1.18994 0.95518 0.96368 0.89185 1.21555 1.22506 1.21345 0.92274 0.92902 1.25712 0.95832 0.95503 1.01651 1.70040 1.33329 1.30820 1.22119 0.85629 0.78624 0.78676 0.79562 1.19412 1.21052 1.19694 1.22295 0.86970 0.99593 0.98830 0.91548 0.93228 0.91868 0.91388 0.90926 0.89689 0.92611 0.93893 0.90733 0.90485 0.91481 0.97988 0.94681 0.92667 0.91741 0.93682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 9.20 71.98 0.66 -1.88 16 2 C -0.09 -1.89 2.88 -10.74 -0.03 -1.92 16 3 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 4 C -0.11 -1.89 5.29 30.67 0.16 -1.73 16 5 C -0.11 -2.07 6.09 30.65 0.19 -1.88 16 6 C 0.05 1.15 5.46 86.32 0.47 1.62 16 7 N -0.56 -14.97 4.38 -896.38 -3.93 -18.90 16 8 C 0.07 2.17 4.52 86.30 0.39 2.56 16 9 C 0.02 0.60 1.75 -12.60 -0.02 0.58 16 10 H 0.12 4.00 6.07 -2.39 -0.01 3.99 16 11 C 0.27 11.31 13.46 89.44 1.20 12.52 16 12 N -0.51 -23.67 18.54 20.01 0.37 -23.30 16 13 C 0.04 1.79 4.42 29.85 0.13 1.92 16 14 C -0.54 -28.89 8.60 25.60 0.22 -28.67 16 15 H 0.05 2.82 7.59 -2.91 -0.02 2.80 16 16 C 0.01 0.66 5.46 84.65 0.46 1.12 16 17 N -0.92 -53.26 13.29 21.45 0.28 -52.97 16 18 Si 0.95 43.67 29.54 68.60 2.03 45.70 16 19 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 20 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 21 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 22 C 0.05 1.26 4.32 86.33 0.37 1.63 16 23 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 24 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 25 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.06 1.17 8.14 -2.39 -0.02 1.16 16 30 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.07 1.56 8.12 -2.39 -0.02 1.54 16 32 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 33 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 35 H 0.03 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.26 14.41 8.31 -92.70 -0.77 13.64 16 37 H 0.06 1.81 5.71 -2.39 -0.01 1.79 16 38 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -62.47 308.30 3.98 -58.50 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: 1.01 Total: 5.11 kcal Atomic # 6 Polarization: -18.34 SS G_CDS: 4.21 Total: -14.13 kcal Atomic # 7 Polarization: -91.90 SS G_CDS: -3.27 Total: -95.17 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -62.47 3.98 -58.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249525741.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.135 kcal (2) G-P(sol) polarization free energy of solvation -62.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds