Wall clock time and date at job start Sun Mar 29 2020 21:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46504 * 119.99917 * 2 1 4 4 C 1.38625 * 120.00066 * 179.97438 * 2 1 3 5 5 C 1.39165 * 120.48587 * 5.00297 * 4 2 1 6 6 C 1.39132 * 118.26722 * 180.02562 * 5 4 2 7 7 N 1.38633 * 120.48315 * 179.97438 * 6 5 4 8 8 C 1.46504 * 120.00083 * 184.99960 * 7 6 5 9 9 C 1.46500 * 120.00036 * 5.00706 * 7 6 5 10 10 C 1.50706 * 109.46949 * 89.99591 * 9 7 6 11 11 H 1.07995 * 120.00167 * 359.72205 * 10 9 7 12 12 C 1.37879 * 119.99394 * 179.97438 * 10 9 7 13 13 N 1.31514 * 120.00338 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99424 * 180.02562 * 12 10 9 15 15 H 1.48490 * 109.47405 * 60.00219 * 14 12 10 16 16 H 1.48503 * 109.46845 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47399 * 299.99813 * 14 12 10 18 18 N 1.33197 * 119.03057 * 0.25586 * 6 5 4 19 19 C 1.31730 * 120.88034 * 359.47839 * 18 6 5 20 20 N 1.31759 * 121.91055 * 0.53762 * 19 18 6 21 21 H 1.08998 * 109.47300 * 270.00197 * 1 2 3 22 22 H 1.09001 * 109.47070 * 30.00120 * 1 2 3 23 23 H 1.09006 * 109.46905 * 149.99948 * 1 2 3 24 24 H 1.09003 * 109.46962 * 270.00117 * 3 2 1 25 25 H 1.09004 * 109.47190 * 29.99885 * 3 2 1 26 26 H 1.08993 * 109.47325 * 149.99495 * 3 2 1 27 27 H 1.07995 * 120.86512 * 0.02562 * 5 4 2 28 28 H 1.08997 * 109.47514 * 270.00791 * 8 7 6 29 29 H 1.09003 * 109.46763 * 30.00195 * 8 7 6 30 30 H 1.08995 * 109.47081 * 150.00614 * 8 7 6 31 31 H 1.09000 * 109.47175 * 329.99617 * 9 7 6 32 32 H 1.09001 * 109.47297 * 209.99125 * 9 7 6 33 33 H 0.96996 * 119.99730 * 179.97438 * 13 12 10 34 34 H 1.07995 * 119.04078 * 180.24413 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1581 -1.2005 0.0005 5 6 1.4765 -2.4094 -0.1035 6 6 2.2181 -3.5866 -0.0977 7 7 1.5861 -4.8163 -0.1984 8 6 2.3647 -6.0518 -0.0813 9 6 0.1397 -4.8805 -0.4219 10 6 -0.1394 -4.8989 -1.9028 11 1 0.6786 -4.8616 -2.6070 12 6 -1.4393 -4.9582 -2.3586 13 7 -2.4356 -4.9981 -1.5011 14 14 -1.7851 -4.9818 -4.1941 15 1 -1.1364 -6.1697 -4.8049 16 1 -3.2513 -5.0467 -4.4207 17 1 -1.2429 -3.7471 -4.8160 18 7 3.5436 -3.5149 0.0116 19 6 4.1526 -2.3504 0.1030 20 7 3.4860 -1.2139 0.1012 21 1 -0.3634 0.0000 1.0276 22 1 -0.3633 0.8900 -0.5139 23 1 -0.3633 -0.8900 -0.5139 24 1 2.3791 1.5834 -1.0277 25 1 1.6084 2.0285 0.5138 26 1 3.1498 1.1385 0.5139 27 1 0.4000 -2.4330 -0.1866 28 1 2.7147 -6.3556 -1.0678 29 1 3.2210 -5.8811 0.5713 30 1 1.7379 -6.8378 0.3398 31 1 -0.3363 -4.0086 0.0267 32 1 -0.2586 -5.7869 0.0341 33 1 -3.3501 -5.0394 -1.8218 34 1 5.2290 -2.3268 0.1864 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258868148.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:02 Heat of formation + Delta-G solvation = 69.729268 kcal Electronic energy + Delta-G solvation = -16777.628959 eV Core-core repulsion = 14132.347097 eV Total energy + Delta-G solvation = -2645.281862 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.15437 -36.95643 -35.86399 -32.83335 -31.48544 -30.48141 -28.04119 -27.84857 -25.86409 -24.32064 -23.57308 -21.94399 -20.04498 -17.18794 -16.91965 -16.55779 -15.11518 -15.05208 -14.74130 -14.44975 -14.22249 -13.96024 -13.46314 -13.06164 -12.95295 -12.38244 -12.12328 -11.93888 -11.78106 -11.51317 -11.32144 -10.98425 -10.71148 -10.55383 -10.21712 -9.92765 -9.62198 -9.32447 -8.56162 -8.47487 -7.52102 -6.92320 -6.14504 -4.23643 1.98965 2.33958 3.24161 3.24861 3.28941 3.32949 3.90696 4.34778 4.74627 4.89392 5.14630 5.19238 5.36054 5.50873 5.56381 5.76410 5.84366 5.95497 5.98749 6.03242 6.22133 6.23668 6.44439 6.46191 6.72147 7.00366 7.15628 7.19329 7.61461 7.76127 7.81536 8.07802 8.30787 8.34278 8.82653 9.12048 9.43309 10.89435 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.021039 B = 0.008481 C = 0.006756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.529473 B = 3300.874393 C = 4143.321130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.614 5.614 3 C 0.103 3.897 4 C 0.447 3.553 5 C -0.347 4.347 6 C 0.466 3.534 7 N -0.582 5.582 8 C 0.106 3.894 9 C 0.250 3.750 10 C -0.533 4.533 11 H 0.059 0.941 12 C 0.064 3.936 13 N -0.894 5.894 14 Si 0.897 3.103 15 H -0.276 1.276 16 H -0.285 1.285 17 H -0.276 1.276 18 N -0.621 5.621 19 C 0.359 3.641 20 N -0.627 5.627 21 H 0.049 0.951 22 H 0.066 0.934 23 H 0.081 0.919 24 H 0.042 0.958 25 H 0.057 0.943 26 H 0.078 0.922 27 H 0.145 0.855 28 H 0.043 0.957 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.038 0.962 32 H 0.038 0.962 33 H 0.265 0.735 34 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.314 7.381 3.765 10.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.329 5.329 3 C -0.040 4.040 4 C 0.211 3.789 5 C -0.380 4.380 6 C 0.225 3.775 7 N -0.290 5.290 8 C -0.038 4.038 9 C 0.131 3.869 10 C -0.572 4.572 11 H 0.077 0.923 12 C -0.139 4.139 13 N -0.533 5.533 14 Si 0.725 3.275 15 H -0.201 1.201 16 H -0.211 1.211 17 H -0.202 1.202 18 N -0.351 5.351 19 C 0.067 3.933 20 N -0.358 5.358 21 H 0.068 0.932 22 H 0.085 0.915 23 H 0.099 0.901 24 H 0.061 0.939 25 H 0.076 0.924 26 H 0.097 0.903 27 H 0.163 0.837 28 H 0.062 0.938 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.075 0.925 34 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 6.756 7.312 3.840 10.670 hybrid contribution -1.243 -0.046 -1.230 1.749 sum 5.513 7.266 2.610 9.487 Atomic orbital electron populations 1.21715 0.78352 1.03443 1.01404 1.46010 1.05145 1.02883 1.78904 1.21480 0.97538 0.84123 1.00838 1.18089 0.88191 0.85460 0.87205 1.21433 1.02504 0.90787 1.23261 1.18213 0.87509 0.86477 0.85292 1.46972 1.09441 1.01374 1.71222 1.21413 0.95581 0.85995 1.00772 1.19421 0.72474 0.98376 0.96648 1.21491 0.92343 1.51458 0.91923 0.92282 1.24929 0.95906 0.94859 0.98161 1.69913 0.99286 1.49978 1.34092 0.86564 0.77083 0.78842 0.85050 1.20119 1.21084 1.20159 1.67913 1.09157 1.30041 1.27959 1.24054 0.99409 0.81646 0.88168 1.67779 1.06863 1.32054 1.29112 0.93219 0.91502 0.90065 0.93934 0.92391 0.90345 0.83746 0.93846 0.91718 0.92209 0.94428 0.94436 0.92497 0.80041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.32 10.30 59.85 0.62 1.94 16 2 N -0.61 -9.90 3.38 -189.55 -0.64 -10.54 16 3 C 0.10 1.32 10.51 59.85 0.63 1.95 16 4 C 0.45 8.61 7.38 -154.71 -1.14 7.46 16 5 C -0.35 -7.38 8.49 -38.91 -0.33 -7.71 16 6 C 0.47 10.22 7.38 -154.70 -1.14 9.08 16 7 N -0.58 -12.98 2.96 -182.99 -0.54 -13.52 16 8 C 0.11 2.00 10.48 59.85 0.63 2.63 16 9 C 0.25 6.23 5.07 -5.19 -0.03 6.20 16 10 C -0.53 -14.49 9.39 -34.44 -0.32 -14.81 16 11 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 12 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 13 N -0.89 -24.95 13.29 55.43 0.74 -24.22 16 14 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 15 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 16 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 18 N -0.62 -12.48 9.31 -13.88 -0.13 -12.61 16 19 C 0.36 6.35 12.28 -92.24 -1.13 5.22 16 20 N -0.63 -11.61 9.23 -13.88 -0.13 -11.74 16 21 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 22 H 0.07 0.76 8.07 -51.93 -0.42 0.34 16 23 H 0.08 1.31 6.05 -51.93 -0.31 1.00 16 24 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.58 8.07 -51.93 -0.42 0.17 16 26 H 0.08 1.04 7.33 -51.93 -0.38 0.66 16 27 H 0.15 3.20 4.24 -52.49 -0.22 2.98 16 28 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.06 1.13 7.48 -51.93 -0.39 0.74 16 30 H 0.06 1.04 7.89 -51.93 -0.41 0.63 16 31 H 0.04 0.97 6.04 -51.93 -0.31 0.66 16 32 H 0.04 0.96 7.89 -51.93 -0.41 0.55 16 33 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 34 H 0.18 2.43 8.06 -52.49 -0.42 2.01 16 LS Contribution 287.42 15.07 4.33 4.33 Total: -1.00 -30.29 287.42 -8.23 -38.52 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: -4.51 Total: 0.08 kcal Atomic # 6 Polarization: 15.93 SS G_CDS: -2.32 Total: 13.60 kcal Atomic # 7 Polarization: -71.92 SS G_CDS: -0.70 Total: -72.62 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -30.29 -8.23 -38.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258868148.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.249 kcal (2) G-P(sol) polarization free energy of solvation -30.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds