Wall clock time and date at job start Sun Mar 29 2020 21:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46504 * 119.99917 * 2 1 4 4 C 1.38625 * 120.00066 * 179.97438 * 2 1 3 5 5 C 1.39165 * 120.48587 * 5.00297 * 4 2 1 6 6 C 1.39132 * 118.26722 * 180.02562 * 5 4 2 7 7 N 1.38633 * 120.48315 * 179.97438 * 6 5 4 8 8 C 1.46504 * 120.00083 * 184.99960 * 7 6 5 9 9 C 1.46500 * 120.00036 * 5.00706 * 7 6 5 10 10 C 1.50706 * 109.46949 * 89.99591 * 9 7 6 11 11 H 1.07995 * 120.00167 * 359.72205 * 10 9 7 12 12 C 1.37879 * 119.99394 * 179.97438 * 10 9 7 13 13 N 1.31514 * 120.00338 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99424 * 180.02562 * 12 10 9 15 15 H 1.48490 * 109.47405 * 60.00219 * 14 12 10 16 16 H 1.48503 * 109.46845 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47399 * 299.99813 * 14 12 10 18 18 N 1.33197 * 119.03057 * 0.25586 * 6 5 4 19 19 C 1.31730 * 120.88034 * 359.47839 * 18 6 5 20 20 N 1.31759 * 121.91055 * 0.53762 * 19 18 6 21 21 H 1.08998 * 109.47300 * 270.00197 * 1 2 3 22 22 H 1.09001 * 109.47070 * 30.00120 * 1 2 3 23 23 H 1.09006 * 109.46905 * 149.99948 * 1 2 3 24 24 H 1.09003 * 109.46962 * 270.00117 * 3 2 1 25 25 H 1.09004 * 109.47190 * 29.99885 * 3 2 1 26 26 H 1.08993 * 109.47325 * 149.99495 * 3 2 1 27 27 H 1.07995 * 120.86512 * 0.02562 * 5 4 2 28 28 H 1.08997 * 109.47514 * 270.00791 * 8 7 6 29 29 H 1.09003 * 109.46763 * 30.00195 * 8 7 6 30 30 H 1.08995 * 109.47081 * 150.00614 * 8 7 6 31 31 H 1.09000 * 109.47175 * 329.99617 * 9 7 6 32 32 H 1.09001 * 109.47297 * 209.99125 * 9 7 6 33 33 H 0.96996 * 119.99730 * 179.97438 * 13 12 10 34 34 H 1.07995 * 119.04078 * 180.24413 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1581 -1.2005 0.0005 5 6 1.4765 -2.4094 -0.1035 6 6 2.2181 -3.5866 -0.0977 7 7 1.5861 -4.8163 -0.1984 8 6 2.3647 -6.0518 -0.0813 9 6 0.1397 -4.8805 -0.4219 10 6 -0.1394 -4.8989 -1.9028 11 1 0.6786 -4.8616 -2.6070 12 6 -1.4393 -4.9582 -2.3586 13 7 -2.4356 -4.9981 -1.5011 14 14 -1.7851 -4.9818 -4.1941 15 1 -1.1364 -6.1697 -4.8049 16 1 -3.2513 -5.0467 -4.4207 17 1 -1.2429 -3.7471 -4.8160 18 7 3.5436 -3.5149 0.0116 19 6 4.1526 -2.3504 0.1030 20 7 3.4860 -1.2139 0.1012 21 1 -0.3634 0.0000 1.0276 22 1 -0.3633 0.8900 -0.5139 23 1 -0.3633 -0.8900 -0.5139 24 1 2.3791 1.5834 -1.0277 25 1 1.6084 2.0285 0.5138 26 1 3.1498 1.1385 0.5139 27 1 0.4000 -2.4330 -0.1866 28 1 2.7147 -6.3556 -1.0678 29 1 3.2210 -5.8811 0.5713 30 1 1.7379 -6.8378 0.3398 31 1 -0.3363 -4.0086 0.0267 32 1 -0.2586 -5.7869 0.0341 33 1 -3.3501 -5.0394 -1.8218 34 1 5.2290 -2.3268 0.1864 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258868148.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:01 Heat of formation + Delta-G solvation = 53.199809 kcal Electronic energy + Delta-G solvation = -16778.345730 eV Core-core repulsion = 14132.347097 eV Total energy + Delta-G solvation = -2645.998633 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.64783 -38.43506 -37.37928 -34.83911 -33.02741 -31.95396 -29.84888 -29.07650 -27.41342 -25.80878 -25.28175 -23.51903 -21.57344 -18.77381 -18.57851 -18.37517 -16.82880 -16.40541 -16.32051 -16.02449 -15.72380 -15.45266 -14.86462 -14.67351 -14.53191 -13.94418 -13.40874 -13.30532 -13.17946 -13.02187 -12.89948 -12.73427 -12.57251 -12.18178 -12.10342 -11.67126 -11.22081 -11.00523 -10.64331 -9.98869 -8.93055 -8.60341 -8.16590 -6.39282 0.49646 0.77690 1.37639 1.38077 1.46817 1.97037 2.24366 2.40783 3.04404 3.23105 3.59318 3.79588 4.09837 4.33878 4.44719 4.47086 4.55637 4.65491 4.71720 4.77957 4.80426 4.93226 4.94779 5.00875 5.02314 5.14950 5.46718 5.60370 5.81405 6.00539 6.09788 6.38573 6.62535 6.67245 6.84130 7.30940 7.61560 8.80938 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.021039 B = 0.008481 C = 0.006756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.529473 B = 3300.874393 C = 4143.321130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.614 5.614 3 C 0.100 3.900 4 C 0.446 3.554 5 C -0.373 4.373 6 C 0.449 3.551 7 N -0.595 5.595 8 C 0.108 3.892 9 C 0.268 3.732 10 C -0.547 4.547 11 H 0.044 0.956 12 C 0.022 3.978 13 N -0.919 5.919 14 Si 0.958 3.042 15 H -0.271 1.271 16 H -0.275 1.275 17 H -0.276 1.276 18 N -0.630 5.630 19 C 0.361 3.639 20 N -0.626 5.626 21 H 0.061 0.939 22 H 0.099 0.901 23 H 0.052 0.948 24 H 0.049 0.951 25 H 0.090 0.910 26 H 0.073 0.927 27 H 0.126 0.874 28 H 0.039 0.961 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.021 0.979 32 H 0.024 0.976 33 H 0.269 0.731 34 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.113 8.696 3.358 11.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.327 5.327 3 C -0.041 4.041 4 C 0.207 3.793 5 C -0.407 4.407 6 C 0.209 3.791 7 N -0.305 5.305 8 C -0.034 4.034 9 C 0.147 3.853 10 C -0.586 4.586 11 H 0.062 0.938 12 C -0.179 4.179 13 N -0.558 5.558 14 Si 0.783 3.217 15 H -0.196 1.196 16 H -0.200 1.200 17 H -0.201 1.201 18 N -0.361 5.361 19 C 0.070 3.930 20 N -0.357 5.357 21 H 0.080 0.920 22 H 0.117 0.883 23 H 0.070 0.930 24 H 0.068 0.932 25 H 0.109 0.891 26 H 0.092 0.908 27 H 0.143 0.857 28 H 0.058 0.942 29 H 0.097 0.903 30 H 0.088 0.912 31 H 0.039 0.961 32 H 0.042 0.958 33 H 0.079 0.921 34 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 7.570 8.662 3.443 12.007 hybrid contribution -1.446 -0.334 -1.057 1.822 sum 6.123 8.328 2.386 10.608 Atomic orbital electron populations 1.21822 0.77411 1.03567 1.02240 1.46382 1.06022 1.03014 1.77295 1.21691 0.97629 0.83123 1.01704 1.18320 0.88640 0.86051 0.86337 1.21391 1.01755 0.91935 1.25612 1.18435 0.88507 0.86360 0.85770 1.46897 1.08642 1.02718 1.72203 1.21500 0.95875 0.85117 1.00945 1.18986 0.74330 0.96754 0.95279 1.21632 0.92267 1.51900 0.92802 0.93764 1.25654 0.95616 0.94288 1.02300 1.69998 0.99657 1.50274 1.35869 0.85616 0.77367 0.78756 0.79991 1.19619 1.19959 1.20138 1.67974 1.08071 1.31216 1.28810 1.24992 1.01140 0.80771 0.86076 1.67939 1.06238 1.32218 1.29297 0.92018 0.88251 0.92971 0.93230 0.89147 0.90832 0.85661 0.94220 0.90260 0.91191 0.96139 0.95794 0.92146 0.75669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.49 10.30 127.77 1.32 3.81 16 2 N -0.61 -18.85 3.38 -753.62 -2.55 -21.40 16 3 C 0.10 2.28 10.51 127.77 1.34 3.62 16 4 C 0.45 16.89 7.38 132.97 0.98 17.87 16 5 C -0.37 -16.27 8.49 22.71 0.19 -16.07 16 6 C 0.45 19.97 7.38 132.95 0.98 20.95 16 7 N -0.60 -27.19 2.96 -732.86 -2.17 -29.36 16 8 C 0.11 4.11 10.48 127.77 1.34 5.45 16 9 C 0.27 13.82 5.07 85.63 0.43 14.25 16 10 C -0.55 -30.47 9.39 25.60 0.24 -30.22 16 11 H 0.04 2.54 7.81 -2.91 -0.02 2.52 16 12 C 0.02 1.19 5.46 84.66 0.46 1.65 16 13 N -0.92 -51.94 13.29 21.45 0.28 -51.66 16 14 Si 0.96 43.35 29.54 68.60 2.03 45.37 16 15 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 16 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 17 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 18 N -0.63 -24.84 9.31 -197.84 -1.84 -26.68 16 19 C 0.36 12.08 12.28 180.91 2.22 14.30 16 20 N -0.63 -22.14 9.23 -197.83 -1.83 -23.96 16 21 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 22 H 0.10 2.01 8.07 -2.39 -0.02 2.00 16 23 H 0.05 1.73 6.05 -2.38 -0.01 1.72 16 24 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.09 1.48 8.07 -2.38 -0.02 1.46 16 26 H 0.07 1.77 7.33 -2.39 -0.02 1.75 16 27 H 0.13 5.88 4.24 -2.91 -0.01 5.87 16 28 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.08 2.73 7.48 -2.39 -0.02 2.71 16 30 H 0.07 2.44 7.89 -2.39 -0.02 2.42 16 31 H 0.02 1.12 6.04 -2.39 -0.01 1.11 16 32 H 0.02 1.28 7.89 -2.39 -0.02 1.26 16 33 H 0.27 14.34 8.31 -92.71 -0.77 13.57 16 34 H 0.23 5.26 8.06 -2.91 -0.02 5.24 16 Total: -1.00 -65.13 287.42 4.53 -60.60 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: 1.09 Total: 11.49 kcal Atomic # 6 Polarization: 26.09 SS G_CDS: 9.51 Total: 35.60 kcal Atomic # 7 Polarization: -144.96 SS G_CDS: -8.10 Total: -153.06 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.37 kcal Total: -65.13 4.53 -60.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258868148.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.797 kcal (2) G-P(sol) polarization free energy of solvation -65.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds