Wall clock time and date at job start Sun Mar 29 2020 22:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.37099 * 120.00035 * 2 1 4 4 H 1.07997 * 120.00226 * 159.20324 * 3 2 1 5 5 C 1.38951 * 119.99381 * 339.47581 * 3 2 1 6 6 N 1.31407 * 120.00640 * 343.78817 * 5 3 2 7 7 Si 1.86801 * 119.99398 * 163.79383 * 5 3 2 8 8 H 1.48496 * 109.47303 * 90.00085 * 7 5 3 9 9 H 1.48505 * 109.46836 * 209.99718 * 7 5 3 10 10 H 1.48497 * 109.47362 * 329.99378 * 7 5 3 11 11 C 1.34777 * 120.00184 * 179.97438 * 2 1 3 12 12 O 1.21286 * 120.00344 * 179.97438 * 11 2 1 13 13 C 1.50706 * 119.99814 * 0.02562 * 11 2 1 14 14 H 1.09004 * 115.55135 * 34.33136 * 13 11 2 15 15 C 1.53001 * 117.49915 * 179.97438 * 13 11 2 16 16 C 1.53001 * 60.00072 * 107.48827 * 15 13 11 17 17 Cl 1.80302 * 117.49915 * 252.51159 * 16 15 13 18 18 Cl 1.80300 * 117.49882 * 107.48930 * 16 15 13 19 19 H 1.08999 * 109.47705 * 92.07895 * 1 2 3 20 20 H 1.09006 * 109.46843 * 212.07293 * 1 2 3 21 21 H 1.08996 * 109.47777 * 332.07371 * 1 2 3 22 22 H 0.96993 * 120.00417 * 180.02562 * 6 5 3 23 23 H 1.08998 * 117.50444 * 214.97907 * 15 13 11 24 24 H 1.09008 * 117.49767 * 359.97438 * 15 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1777 1.2178 0.3321 5 6 1.5217 2.3524 -0.4219 6 7 0.4046 2.2839 -1.1105 7 14 2.2648 4.0161 -0.0103 8 1 3.1975 4.4230 -1.0918 9 1 1.1818 5.0246 0.1147 10 1 3.0054 3.9236 1.2734 11 6 2.1389 -1.1672 0.0005 12 8 3.3518 -1.1672 0.0001 13 6 1.3854 -2.4723 0.0005 14 1 0.4472 -2.4736 -0.5545 15 6 2.2075 -3.7627 0.0005 16 6 1.4606 -3.3315 1.2643 17 17 2.4440 -2.7050 2.6396 18 17 -0.0100 -4.2684 1.7228 19 1 -0.3634 -0.0373 -1.0269 20 1 -0.3633 -0.8709 0.5457 21 1 -0.3634 0.9079 0.4813 22 1 -0.0340 3.0972 -1.4053 23 1 1.8098 -4.6129 -0.5537 24 1 3.2934 -3.6676 0.0001 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263686038.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:32 Heat of formation + Delta-G solvation = -11.139348 kcal Electronic energy + Delta-G solvation = -13005.164124 eV Core-core repulsion = 10392.974249 eV Total energy + Delta-G solvation = -2612.189876 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 237.006 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.02935 -36.80410 -35.74382 -35.06889 -34.27127 -31.64159 -26.59259 -25.16461 -22.88419 -21.98282 -18.74775 -17.21186 -16.73501 -15.36946 -15.04496 -14.25670 -13.90553 -13.65744 -12.69212 -12.48700 -12.12678 -11.70416 -11.46237 -11.40986 -11.31897 -10.93707 -10.88038 -10.61531 -10.41078 -10.40234 -10.11221 -9.58816 -9.06128 -8.52935 -7.75640 -6.40671 -3.91014 1.36651 2.45545 3.03330 3.22192 3.24862 3.29286 4.00030 4.06094 4.49949 4.64268 4.97484 5.13006 5.49695 5.63138 5.81056 6.11470 6.30695 6.80504 7.13956 7.51089 8.04258 8.40703 9.11037 9.34429 9.89938 10.63864 Molecular weight = 237.01amu Principal moments of inertia in cm(-1) A = 0.039992 B = 0.007795 C = 0.007370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.971756 B = 3591.174892 C = 3798.403936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.430 5.430 3 C -0.304 4.304 4 H 0.102 0.898 5 C 0.032 3.968 6 N -0.875 5.875 7 Si 0.926 3.074 8 H -0.276 1.276 9 H -0.282 1.282 10 H -0.269 1.269 11 C 0.466 3.534 12 O -0.576 6.576 13 C -0.133 4.133 14 H 0.133 0.867 15 C -0.119 4.119 16 C 0.015 3.985 17 Cl -0.081 7.081 18 Cl -0.111 7.111 19 H 0.054 0.946 20 H 0.028 0.972 21 H 0.076 0.924 22 H 0.269 0.731 23 H 0.118 0.882 24 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.596 -9.114 2.949 9.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.147 5.147 3 C -0.432 4.432 4 H 0.119 0.881 5 C -0.172 4.172 6 N -0.514 5.514 7 Si 0.752 3.248 8 H -0.202 1.202 9 H -0.207 1.207 10 H -0.193 1.193 11 C 0.253 3.747 12 O -0.461 6.461 13 C -0.156 4.156 14 H 0.151 0.849 15 C -0.157 4.157 16 C -0.037 4.037 17 Cl -0.054 7.054 18 Cl -0.084 7.084 19 H 0.073 0.927 20 H 0.047 0.953 21 H 0.095 0.905 22 H 0.079 0.921 23 H 0.137 0.863 24 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -2.203 -8.948 3.020 9.697 hybrid contribution -0.148 0.818 0.247 0.867 sum -2.351 -8.130 3.267 9.071 Atomic orbital electron populations 1.21543 0.81019 0.99963 1.01033 1.43480 1.05590 1.04503 1.61080 1.19686 0.98855 0.83082 1.41587 0.88061 1.25333 0.96532 1.00128 0.95242 1.70020 1.18581 1.29381 1.33431 0.85939 0.78563 0.80967 0.79328 1.20217 1.20737 1.19327 1.18690 0.87327 0.83180 0.85530 1.90531 1.13214 1.86219 1.56092 1.23363 1.02623 0.93867 0.95744 0.84949 1.23844 1.01770 0.97150 0.92919 1.26690 0.89592 1.02566 0.84868 1.98755 1.70407 1.87416 1.48845 1.98720 1.40852 1.74907 1.93921 0.92711 0.95334 0.90530 0.92075 0.86340 0.85251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.39 8.23 59.85 0.49 2.88 14 2 N -0.43 -10.84 3.02 -122.19 -0.37 -11.21 14 3 C -0.30 -8.36 9.30 -14.93 -0.14 -8.50 14 4 H 0.10 2.92 7.40 -52.49 -0.39 2.53 14 5 C 0.03 0.82 4.99 -17.47 -0.09 0.73 14 6 N -0.88 -22.86 10.80 55.50 0.60 -22.26 14 7 Si 0.93 20.45 29.58 -169.99 -5.03 15.42 14 8 H -0.28 -6.11 7.11 56.52 0.40 -5.71 14 9 H -0.28 -6.06 7.11 56.52 0.40 -5.66 14 10 H -0.27 -5.94 7.11 56.52 0.40 -5.54 14 11 C 0.47 11.02 6.50 -10.98 -0.07 10.95 14 12 O -0.58 -15.31 15.77 5.55 0.09 -15.22 14 13 C -0.13 -2.40 4.65 -91.77 -0.43 -2.83 14 14 H 0.13 2.14 7.30 -51.93 -0.38 1.77 14 15 C -0.12 -1.78 9.73 -26.73 -0.26 -2.04 14 16 C 0.02 0.25 3.61 -26.73 -0.10 0.15 14 17 Cl -0.08 -1.47 28.18 -51.86 -1.46 -2.93 14 18 Cl -0.11 -1.57 29.29 -51.86 -1.52 -3.09 14 19 H 0.05 1.22 7.79 -51.93 -0.40 0.82 14 20 H 0.03 0.54 6.76 -51.93 -0.35 0.19 14 21 H 0.08 1.79 6.77 -51.93 -0.35 1.44 14 22 H 0.27 6.64 8.31 -40.82 -0.34 6.30 14 23 H 0.12 1.36 8.14 -51.93 -0.42 0.94 14 24 H 0.13 2.08 7.67 -51.92 -0.40 1.68 14 LS Contribution 245.11 15.07 3.69 3.69 Total: -1.00 -29.08 245.11 -6.42 -35.50 By element: Atomic # 1 Polarization: 0.58 SS G_CDS: -1.83 Total: -1.25 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: -0.59 Total: 1.35 kcal Atomic # 7 Polarization: -33.70 SS G_CDS: 0.23 Total: -33.47 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: 0.09 Total: -15.22 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.03 Total: 15.42 kcal Atomic # 17 Polarization: -3.04 SS G_CDS: -2.98 Total: -6.02 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -29.08 -6.42 -35.50 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263686038.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.358 kcal (2) G-P(sol) polarization free energy of solvation -29.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds