Wall clock time and date at job start Sun Mar 29 2020 22:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.37099 * 120.00035 * 2 1 4 4 H 1.07997 * 120.00226 * 159.20324 * 3 2 1 5 5 C 1.38951 * 119.99381 * 339.47581 * 3 2 1 6 6 N 1.31407 * 120.00640 * 343.78817 * 5 3 2 7 7 Si 1.86801 * 119.99398 * 163.79383 * 5 3 2 8 8 H 1.48496 * 109.47303 * 90.00085 * 7 5 3 9 9 H 1.48505 * 109.46836 * 209.99718 * 7 5 3 10 10 H 1.48497 * 109.47362 * 329.99378 * 7 5 3 11 11 C 1.34777 * 120.00184 * 179.97438 * 2 1 3 12 12 O 1.21286 * 120.00344 * 179.97438 * 11 2 1 13 13 C 1.50706 * 119.99814 * 0.02562 * 11 2 1 14 14 H 1.09004 * 115.55135 * 34.33136 * 13 11 2 15 15 C 1.53001 * 117.49915 * 179.97438 * 13 11 2 16 16 C 1.53001 * 60.00072 * 107.48827 * 15 13 11 17 17 Cl 1.80302 * 117.49915 * 252.51159 * 16 15 13 18 18 Cl 1.80300 * 117.49882 * 107.48930 * 16 15 13 19 19 H 1.08999 * 109.47705 * 92.07895 * 1 2 3 20 20 H 1.09006 * 109.46843 * 212.07293 * 1 2 3 21 21 H 1.08996 * 109.47777 * 332.07371 * 1 2 3 22 22 H 0.96993 * 120.00417 * 180.02562 * 6 5 3 23 23 H 1.08998 * 117.50444 * 214.97907 * 15 13 11 24 24 H 1.09008 * 117.49767 * 359.97438 * 15 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1777 1.2178 0.3321 5 6 1.5217 2.3524 -0.4219 6 7 0.4046 2.2839 -1.1105 7 14 2.2648 4.0161 -0.0103 8 1 3.1975 4.4230 -1.0918 9 1 1.1818 5.0246 0.1147 10 1 3.0054 3.9236 1.2734 11 6 2.1389 -1.1672 0.0005 12 8 3.3518 -1.1672 0.0001 13 6 1.3854 -2.4723 0.0005 14 1 0.4472 -2.4736 -0.5545 15 6 2.2075 -3.7627 0.0005 16 6 1.4606 -3.3315 1.2643 17 17 2.4440 -2.7050 2.6396 18 17 -0.0100 -4.2684 1.7228 19 1 -0.3634 -0.0373 -1.0269 20 1 -0.3633 -0.8709 0.5457 21 1 -0.3634 0.9079 0.4813 22 1 -0.0340 3.0972 -1.4053 23 1 1.8098 -4.6129 -0.5537 24 1 3.2934 -3.6676 0.0001 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263686038.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:32 Heat of formation + Delta-G solvation = -28.563976 kcal Electronic energy + Delta-G solvation = -13005.919713 eV Core-core repulsion = 10392.974249 eV Total energy + Delta-G solvation = -2612.945464 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 237.006 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.73837 -38.26875 -37.04766 -36.76316 -35.87193 -33.61413 -28.47773 -26.95511 -24.56219 -23.25435 -20.42997 -19.00427 -18.49295 -17.06653 -16.67978 -16.01617 -15.66167 -15.31970 -14.15485 -14.08904 -13.68275 -13.35402 -13.15086 -13.02013 -12.93170 -12.63014 -12.34754 -12.22503 -12.13474 -11.90351 -11.52448 -11.02926 -10.91925 -10.39878 -9.70854 -8.37421 -5.96628 0.07284 1.13555 1.33419 1.41906 1.54025 1.66116 2.26436 2.47869 2.91000 3.04738 3.31284 3.49267 3.98209 4.25275 4.56880 4.62463 4.85809 5.00344 5.33189 5.44914 6.06097 6.44651 7.14349 7.43796 7.99837 8.65885 Molecular weight = 237.01amu Principal moments of inertia in cm(-1) A = 0.039992 B = 0.007795 C = 0.007370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.971756 B = 3591.174892 C = 3798.403936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.120 3.880 2 N -0.450 5.450 3 C -0.342 4.342 4 H 0.074 0.926 5 C 0.001 3.999 6 N -0.890 5.890 7 Si 0.986 3.014 8 H -0.274 1.274 9 H -0.267 1.267 10 H -0.273 1.273 11 C 0.463 3.537 12 O -0.614 6.614 13 C -0.150 4.150 14 H 0.155 0.845 15 C -0.094 4.094 16 C 0.018 3.982 17 Cl -0.104 7.104 18 Cl -0.082 7.082 19 H 0.049 0.951 20 H 0.061 0.939 21 H 0.058 0.942 22 H 0.275 0.725 23 H 0.164 0.836 24 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.603 -10.068 2.838 11.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 N -0.167 5.167 3 C -0.470 4.470 4 H 0.092 0.908 5 C -0.202 4.202 6 N -0.528 5.528 7 Si 0.809 3.191 8 H -0.200 1.200 9 H -0.191 1.191 10 H -0.197 1.197 11 C 0.252 3.748 12 O -0.501 6.501 13 C -0.172 4.172 14 H 0.173 0.827 15 C -0.132 4.132 16 C -0.035 4.035 17 Cl -0.077 7.077 18 Cl -0.055 7.055 19 H 0.068 0.932 20 H 0.079 0.921 21 H 0.077 0.923 22 H 0.085 0.915 23 H 0.181 0.819 24 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -3.241 -9.916 2.905 10.829 hybrid contribution 0.134 1.024 0.276 1.069 sum -3.107 -8.892 3.181 9.942 Atomic orbital electron populations 1.21452 0.79447 1.00498 1.00916 1.43713 1.06684 1.04539 1.61766 1.19600 0.98503 0.85111 1.43814 0.90833 1.26021 0.96929 1.02682 0.94547 1.70069 1.19071 1.30447 1.33226 0.85058 0.78136 0.77195 0.78706 1.20008 1.19123 1.19749 1.19512 0.87267 0.84620 0.83446 1.90495 1.15185 1.87277 1.57125 1.23199 1.03876 0.91992 0.98169 0.82711 1.24032 1.01050 0.96479 0.91640 1.26615 0.90502 1.02174 0.84176 1.98758 1.71169 1.87871 1.49887 1.98729 1.39159 1.73823 1.93740 0.93244 0.92102 0.92341 0.91522 0.81871 0.86398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.24 8.23 127.77 1.05 6.29 14 2 N -0.45 -22.92 3.02 -658.90 -1.99 -24.91 14 3 C -0.34 -19.30 9.30 84.04 0.78 -18.52 14 4 H 0.07 4.44 7.40 -2.91 -0.02 4.42 14 5 C 0.00 0.04 4.99 84.93 0.42 0.46 14 6 N -0.89 -46.34 10.80 21.66 0.23 -46.11 14 7 Si 0.99 42.08 29.58 68.60 2.03 44.11 14 8 H -0.27 -11.58 7.11 99.48 0.71 -10.88 14 9 H -0.27 -10.66 7.11 99.48 0.71 -9.95 14 10 H -0.27 -11.72 7.11 99.48 0.71 -11.01 14 11 C 0.46 21.91 6.50 87.66 0.57 22.48 14 12 O -0.61 -33.27 15.77 -3.05 -0.05 -33.32 14 13 C -0.15 -5.11 4.65 -11.54 -0.05 -5.16 14 14 H 0.16 4.54 7.30 -2.38 -0.02 4.52 14 15 C -0.09 -2.55 9.73 30.59 0.30 -2.26 14 16 C 0.02 0.53 3.61 30.60 0.11 0.64 14 17 Cl -0.10 -3.68 28.18 -2.72 -0.08 -3.75 14 18 Cl -0.08 -2.04 29.29 -2.72 -0.08 -2.12 14 19 H 0.05 2.17 7.79 -2.39 -0.02 2.16 14 20 H 0.06 2.20 6.76 -2.38 -0.02 2.18 14 21 H 0.06 2.73 6.77 -2.39 -0.02 2.71 14 22 H 0.27 13.38 8.31 -92.71 -0.77 12.61 14 23 H 0.16 2.96 8.14 -2.39 -0.02 2.94 14 24 H 0.12 3.58 7.67 -2.38 -0.02 3.56 14 Total: -1.00 -63.38 245.11 4.47 -58.90 By element: Atomic # 1 Polarization: 2.03 SS G_CDS: 1.22 Total: 3.26 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: 3.18 Total: 3.95 kcal Atomic # 7 Polarization: -69.27 SS G_CDS: -1.76 Total: -71.02 kcal Atomic # 8 Polarization: -33.27 SS G_CDS: -0.05 Total: -33.32 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Atomic # 17 Polarization: -5.72 SS G_CDS: -0.16 Total: -5.87 kcal Total: -63.38 4.47 -58.90 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263686038.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.340 kcal (2) G-P(sol) polarization free energy of solvation -63.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds