Wall clock time and date at job start Sun Mar 29 2020 22:05:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.37093 * 119.99986 * 2 1 4 4 H 1.08003 * 120.00668 * 142.75495 * 3 2 1 5 5 C 1.38954 * 120.00025 * 322.75689 * 3 2 1 6 6 N 1.31412 * 120.00309 * 158.54289 * 5 3 2 7 7 Si 1.86801 * 120.00054 * 338.53853 * 5 3 2 8 8 H 1.48498 * 109.46955 * 95.73880 * 7 5 3 9 9 H 1.48492 * 109.47298 * 215.74182 * 7 5 3 10 10 H 1.48505 * 109.46868 * 335.74099 * 7 5 3 11 11 C 1.34777 * 120.00079 * 180.27903 * 2 1 3 12 12 O 1.21299 * 119.99676 * 180.02562 * 11 2 1 13 13 C 1.50697 * 120.00378 * 359.97438 * 11 2 1 14 14 H 1.09000 * 115.54364 * 34.41653 * 13 11 2 15 15 C 1.53002 * 117.49911 * 248.75525 * 13 11 2 16 16 C 1.52990 * 117.50239 * 180.09110 * 13 11 2 17 17 Cl 1.80302 * 117.50034 * 214.97676 * 16 13 11 18 18 Cl 1.80298 * 117.50086 * 359.97403 * 16 13 11 19 19 H 1.08995 * 109.47214 * 264.77179 * 1 2 3 20 20 H 1.09000 * 109.47266 * 24.77580 * 1 2 3 21 21 H 1.09001 * 109.46938 * 144.76984 * 1 2 3 22 22 H 0.96995 * 120.00300 * 179.97438 * 6 5 3 23 23 H 1.08996 * 117.49807 * 359.97438 * 15 13 11 24 24 H 1.08996 * 117.49957 * 145.01822 * 15 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1504 1.1873 0.0000 4 1 3.0653 1.2828 0.5661 5 6 1.6682 2.2679 -0.7283 6 7 2.0457 3.4885 -0.4208 7 14 0.4834 1.9857 -2.1446 8 1 -0.9113 2.1604 -1.6655 9 1 0.7617 2.9651 -3.2255 10 1 0.6578 0.6072 -2.6686 11 6 2.1389 -1.1672 -0.0057 12 8 3.3519 -1.1671 -0.0052 13 6 1.3855 -2.4723 -0.0115 14 1 0.4477 -2.4712 -0.5669 15 6 1.4587 -3.3359 1.2494 16 6 2.2076 -3.7626 -0.0156 17 17 1.5506 -5.1653 -0.9385 18 17 4.0037 -3.6054 -0.0140 19 1 -0.3633 -0.0936 1.0233 20 1 -0.3634 0.9331 -0.4307 21 1 -0.3633 -0.8395 -0.5928 22 1 1.7093 4.2429 -0.9294 23 1 2.0521 -2.9602 2.0830 24 1 0.5693 -3.9033 1.5232 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263686040.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:33 Heat of formation + Delta-G solvation = -13.780870 kcal Electronic energy + Delta-G solvation = -13026.187334 eV Core-core repulsion = 10413.882914 eV Total energy + Delta-G solvation = -2612.304421 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 237.006 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.84708 -38.25982 -36.97631 -36.64007 -35.92874 -34.07212 -28.39937 -27.46737 -24.51244 -23.20809 -20.38827 -19.09554 -18.57195 -17.55079 -16.57156 -16.12663 -15.72356 -14.91885 -14.58569 -14.19975 -13.98261 -13.87049 -13.48675 -13.27638 -12.89075 -12.63674 -12.24918 -12.07889 -11.86674 -11.78570 -11.47199 -10.99953 -10.87853 -10.09499 -9.67372 -8.50968 -6.13585 0.18553 1.20225 1.23047 1.33375 1.46448 1.66078 2.18336 2.38115 2.67357 2.96123 3.16855 3.46183 3.89932 4.11670 4.38128 4.56139 4.65557 4.78109 4.86850 5.52769 6.04646 6.54950 6.94253 7.29045 7.86735 8.66179 Molecular weight = 237.01amu Principal moments of inertia in cm(-1) A = 0.038941 B = 0.008280 C = 0.007601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.860251 B = 3380.662264 C = 3683.059941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.478 5.478 3 C -0.332 4.332 4 H 0.046 0.954 5 C 0.010 3.990 6 N -0.912 5.912 7 Si 0.953 3.047 8 H -0.237 1.237 9 H -0.294 1.294 10 H -0.258 1.258 11 C 0.476 3.524 12 O -0.581 6.581 13 C -0.156 4.156 14 H 0.167 0.833 15 C -0.091 4.091 16 C 0.011 3.989 17 Cl -0.086 7.086 18 Cl -0.090 7.090 19 H 0.080 0.920 20 H 0.054 0.946 21 H 0.096 0.904 22 H 0.280 0.720 23 H 0.116 0.884 24 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.040 -15.202 0.431 17.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.200 5.200 3 C -0.460 4.460 4 H 0.064 0.936 5 C -0.192 4.192 6 N -0.549 5.549 7 Si 0.777 3.223 8 H -0.162 1.162 9 H -0.221 1.221 10 H -0.182 1.182 11 C 0.265 3.735 12 O -0.463 6.463 13 C -0.178 4.178 14 H 0.185 0.815 15 C -0.129 4.129 16 C -0.041 4.041 17 Cl -0.059 7.059 18 Cl -0.063 7.063 19 H 0.098 0.902 20 H 0.073 0.927 21 H 0.114 0.886 22 H 0.089 0.911 23 H 0.135 0.865 24 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -8.347 -15.076 0.343 17.236 hybrid contribution 0.258 0.523 -0.727 0.932 sum -8.089 -14.553 -0.385 16.655 Atomic orbital electron populations 1.22287 0.80075 1.02675 1.03639 1.43712 1.06084 1.04220 1.65986 1.18637 1.09482 0.87745 1.30164 0.93642 1.26186 0.99907 0.93883 0.99242 1.69866 1.46072 0.99285 1.39694 0.85776 0.79409 0.78835 0.78313 1.16194 1.22084 1.18179 1.19978 0.87626 0.84868 0.81072 1.90675 1.15141 1.87081 1.53416 1.23152 1.01116 0.88329 1.05242 0.81546 1.24084 1.02218 0.96779 0.89790 1.26509 0.82891 0.90680 1.03990 1.98726 1.84943 1.45440 1.76771 1.98774 1.11743 1.97256 1.98520 0.90191 0.92729 0.88563 0.91057 0.86535 0.81298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.86 8.79 127.77 1.12 2.98 14 2 N -0.48 -22.08 2.58 -658.89 -1.70 -23.78 14 3 C -0.33 -19.17 9.37 84.04 0.79 -18.38 14 4 H 0.05 3.09 7.91 -2.91 -0.02 3.07 14 5 C 0.01 0.55 5.29 84.93 0.45 1.00 14 6 N -0.91 -53.87 13.96 21.66 0.30 -53.57 14 7 Si 0.95 40.98 24.96 68.60 1.71 42.69 14 8 H -0.24 -8.73 6.70 99.48 0.67 -8.07 14 9 H -0.29 -12.83 7.11 99.48 0.71 -12.12 14 10 H -0.26 -10.73 7.11 99.48 0.71 -10.02 14 11 C 0.48 20.85 7.41 87.66 0.65 21.50 14 12 O -0.58 -30.53 13.57 -3.09 -0.04 -30.58 14 13 C -0.16 -4.60 5.14 -11.54 -0.06 -4.66 14 14 H 0.17 3.78 6.51 -2.39 -0.02 3.76 14 15 C -0.09 -2.02 9.92 30.62 0.30 -1.71 14 16 C 0.01 0.32 3.62 30.62 0.11 0.43 14 17 Cl -0.09 -2.01 29.29 -2.72 -0.08 -2.09 14 18 Cl -0.09 -3.22 26.13 -2.72 -0.07 -3.29 14 19 H 0.08 2.28 8.14 -2.39 -0.02 2.26 14 20 H 0.05 1.98 3.44 -2.39 -0.01 1.97 14 21 H 0.10 2.41 6.22 -2.39 -0.01 2.40 14 22 H 0.28 15.14 8.31 -92.71 -0.77 14.37 14 23 H 0.12 2.83 8.14 -2.39 -0.02 2.81 14 24 H 0.17 2.18 8.14 -2.39 -0.02 2.16 14 Total: -1.00 -71.54 237.74 4.67 -66.87 By element: Atomic # 1 Polarization: 1.40 SS G_CDS: 1.19 Total: 2.59 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: 3.36 Total: 1.16 kcal Atomic # 7 Polarization: -75.95 SS G_CDS: -1.40 Total: -77.35 kcal Atomic # 8 Polarization: -30.53 SS G_CDS: -0.04 Total: -30.58 kcal Atomic # 14 Polarization: 40.98 SS G_CDS: 1.71 Total: 42.69 kcal Atomic # 17 Polarization: -5.23 SS G_CDS: -0.15 Total: -5.38 kcal Total: -71.54 4.67 -66.87 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263686040.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.091 kcal (2) G-P(sol) polarization free energy of solvation -71.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds