Wall clock time and date at job start Sun Mar 29 2020 21:36:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46853 * 2 1 4 4 C 1.50701 * 109.47442 * 239.99660 * 2 1 3 5 5 H 1.07990 * 120.00327 * 240.00095 * 4 2 1 6 6 C 1.37886 * 119.99606 * 59.99720 * 4 2 1 7 7 N 1.31516 * 120.00023 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99723 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47107 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.47148 * 120.00154 * 8 6 4 11 11 H 1.48500 * 109.47170 * 240.00082 * 8 6 4 12 12 N 1.46898 * 109.47230 * 119.99524 * 2 1 3 13 13 C 1.46905 * 111.00079 * 176.04689 * 12 2 1 14 14 C 1.46897 * 111.00262 * 300.00085 * 12 2 1 15 15 C 1.50699 * 109.47181 * 169.99660 * 14 12 2 16 16 N 1.31794 * 119.08252 * 90.00558 * 15 14 12 17 17 C 1.32543 * 121.01091 * 179.72231 * 16 15 14 18 18 C 1.38117 * 119.20217 * 359.97438 * 17 16 15 19 19 C 1.39628 * 118.33224 * 0.02562 * 18 17 16 20 20 N 1.38537 * 120.53195 * 179.97438 * 19 18 17 21 21 N 1.31741 * 119.08643 * 269.73121 * 15 14 12 22 22 H 1.08996 * 109.47178 * 60.00309 * 1 2 3 23 23 H 1.09000 * 109.46853 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.46810 * 300.00195 * 1 2 3 25 25 H 0.96999 * 119.99600 * 179.97438 * 7 6 4 26 26 H 1.09001 * 109.46815 * 183.95425 * 13 12 2 27 27 H 1.09001 * 109.46789 * 303.95855 * 13 12 2 28 28 H 1.08998 * 109.46823 * 63.95366 * 13 12 2 29 29 H 1.09006 * 109.46706 * 49.99882 * 14 12 2 30 30 H 1.09002 * 109.47437 * 290.00012 * 14 12 2 31 31 H 1.08002 * 120.40225 * 179.97438 * 17 16 15 32 32 H 1.08001 * 120.83681 * 180.02562 * 18 17 16 33 33 H 0.96995 * 120.00269 * 0.02562 * 20 19 18 34 34 H 0.97005 * 119.99947 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4828 7 7 0.9435 0.8301 -2.6034 8 14 2.3214 -1.1205 -4.0079 9 1 3.1456 -2.2877 -3.6037 10 1 1.1662 -1.5869 -4.8160 11 1 3.1467 -0.1875 -4.8165 12 7 2.0197 -0.6924 1.1995 13 6 3.4852 -0.7944 1.1871 14 6 1.5487 -0.0262 2.4211 15 6 1.8580 -0.8909 3.6159 16 7 3.0116 -0.7394 4.2349 17 6 3.3208 -1.4756 5.2928 18 6 2.4155 -2.4139 5.7487 19 6 1.2027 -2.5489 5.0701 20 7 0.2619 -3.4761 5.4879 21 7 0.9655 -1.7735 4.0159 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8899 25 1 0.7095 1.1616 -3.4845 26 1 3.8164 -1.3720 2.0501 27 1 3.8070 -1.2914 0.2719 28 1 3.9192 0.2045 1.2300 29 1 0.4722 0.1325 2.3563 30 1 2.0519 0.9348 2.5280 31 1 4.2692 -1.3435 5.7924 32 1 2.6400 -3.0276 6.6085 33 1 0.4430 -4.0376 6.2578 34 1 -0.5782 -3.5632 5.0109 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269704337.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:05 Heat of formation + Delta-G solvation = 62.609295 kcal Electronic energy + Delta-G solvation = -16623.912149 eV Core-core repulsion = 13978.321541 eV Total energy + Delta-G solvation = -2645.590607 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.70002 -36.99458 -35.39196 -33.10711 -32.34626 -30.45712 -28.97995 -27.51753 -24.86054 -23.86954 -23.32740 -21.81212 -19.38840 -18.02499 -17.23819 -16.17343 -15.71786 -15.34985 -15.16259 -14.67484 -14.05907 -13.84504 -13.49789 -13.37462 -12.38274 -12.16488 -11.75159 -11.63356 -11.02019 -10.95923 -10.77887 -10.59086 -10.37559 -10.07913 -9.95291 -9.84217 -9.64898 -8.92657 -8.80239 -8.38693 -8.30440 -7.12378 -5.96313 -4.00002 1.25156 1.60265 3.33532 3.36239 3.41101 3.46094 4.07727 4.39148 4.47950 4.56745 5.02430 5.27125 5.28527 5.38331 5.59226 5.73174 6.11295 6.19544 6.37940 6.52687 6.57065 6.90151 6.93271 7.02812 7.14257 7.20728 7.21398 7.57784 7.71071 7.77382 7.88441 8.25863 8.37228 8.60659 8.63941 9.06253 9.64347 11.10706 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.039945 B = 0.005709 C = 0.005581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.795762 B = 4903.479189 C = 5015.457770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.213 3.787 3 H 0.001 0.999 4 C -0.500 4.500 5 H 0.064 0.936 6 C 0.058 3.942 7 N -0.893 5.893 8 Si 0.897 3.103 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.285 1.285 12 N -0.528 5.528 13 C 0.040 3.960 14 C 0.112 3.888 15 C 0.389 3.611 16 N -0.556 5.556 17 C 0.174 3.826 18 C -0.309 4.309 19 C 0.434 3.566 20 N -0.841 5.841 21 N -0.559 5.559 22 H 0.085 0.915 23 H 0.036 0.964 24 H 0.009 0.991 25 H 0.259 0.741 26 H 0.043 0.957 27 H 0.074 0.926 28 H 0.015 0.985 29 H 0.099 0.901 30 H 0.051 0.949 31 H 0.161 0.839 32 H 0.135 0.865 33 H 0.408 0.592 34 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.998 -5.717 15.937 16.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.108 3.892 3 H 0.019 0.981 4 C -0.539 4.539 5 H 0.082 0.918 6 C -0.143 4.143 7 N -0.533 5.533 8 Si 0.725 3.275 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.212 1.212 12 N -0.253 5.253 13 C -0.109 4.109 14 C -0.018 4.018 15 C 0.120 3.880 16 N -0.275 5.275 17 C 0.010 3.990 18 C -0.338 4.338 19 C 0.189 3.811 20 N -0.385 5.385 21 N -0.283 5.283 22 H 0.104 0.896 23 H 0.055 0.945 24 H 0.028 0.972 25 H 0.069 0.931 26 H 0.062 0.938 27 H 0.093 0.907 28 H 0.034 0.966 29 H 0.117 0.883 30 H 0.069 0.931 31 H 0.178 0.822 32 H 0.152 0.848 33 H 0.237 0.763 34 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 0.551 -5.494 14.995 15.979 hybrid contribution 0.558 -0.578 0.148 0.817 sum 1.109 -6.073 15.142 16.352 Atomic orbital electron populations 1.21858 0.97562 0.99844 0.99859 1.19287 0.92457 0.92096 0.85407 0.98104 1.21176 1.30828 1.12212 0.89635 0.91820 1.24923 0.95257 0.95113 0.98963 1.69906 1.37057 1.23060 1.23248 0.86460 0.78554 0.79598 0.82907 1.19806 1.21069 1.21158 1.62119 1.09835 1.52364 1.01032 1.22229 0.88226 0.99212 1.01223 1.20905 1.02205 0.92397 0.86258 1.23062 0.83540 0.88568 0.92838 1.68374 1.20333 1.28575 1.10183 1.22849 0.97732 0.88204 0.90196 1.22008 0.96980 1.07958 1.06824 1.18582 0.87356 0.86960 0.88248 1.42134 1.20012 1.40506 1.35879 1.67848 1.36284 1.09501 1.14701 0.89616 0.94522 0.97177 0.93076 0.93785 0.90706 0.96631 0.88328 0.93132 0.82220 0.84755 0.76257 0.76333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.34 8.76 37.16 0.33 -3.01 16 2 C 0.21 5.55 2.06 -68.86 -0.14 5.41 16 3 H 0.00 0.04 8.14 -51.93 -0.42 -0.38 16 4 C -0.50 -13.98 7.88 -34.44 -0.27 -14.26 16 5 H 0.06 1.79 6.40 -52.49 -0.34 1.46 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 7 N -0.89 -25.71 11.32 55.43 0.63 -25.08 16 8 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 9 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 N -0.53 -12.22 4.61 -237.72 -1.10 -13.31 16 13 C 0.04 0.86 9.00 60.07 0.54 1.40 16 14 C 0.11 2.29 5.21 -4.98 -0.03 2.26 16 15 C 0.39 7.29 6.42 -157.24 -1.01 6.28 16 16 N -0.56 -9.54 9.24 -10.81 -0.10 -9.64 16 17 C 0.17 2.30 11.29 -17.29 -0.20 2.11 16 18 C -0.31 -3.71 10.04 -39.11 -0.39 -4.10 16 19 C 0.43 6.07 7.82 -154.78 -1.21 4.86 16 20 N -0.84 -8.09 9.06 31.24 0.28 -7.81 16 21 N -0.56 -9.94 10.37 -9.97 -0.10 -10.04 16 22 H 0.09 2.32 6.07 -51.93 -0.32 2.01 16 23 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 24 H 0.01 0.21 6.20 -51.93 -0.32 -0.11 16 25 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 26 H 0.04 0.90 6.55 -51.93 -0.34 0.56 16 27 H 0.07 1.70 6.10 -51.93 -0.32 1.39 16 28 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.10 2.01 5.83 -51.93 -0.30 1.70 16 30 H 0.05 1.01 8.12 -51.93 -0.42 0.59 16 31 H 0.16 1.51 8.06 -52.49 -0.42 1.09 16 32 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 33 H 0.41 2.49 8.84 -40.82 -0.36 2.13 16 34 H 0.41 3.76 8.95 -40.82 -0.37 3.39 16 LS Contribution 281.17 15.07 4.24 4.24 Total: -1.00 -31.88 281.17 -7.98 -39.86 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -4.33 Total: 2.68 kcal Atomic # 6 Polarization: 4.96 SS G_CDS: -2.47 Total: 2.49 kcal Atomic # 7 Polarization: -65.50 SS G_CDS: -0.39 Total: -65.89 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -31.88 -7.98 -39.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269704337.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.471 kcal (2) G-P(sol) polarization free energy of solvation -31.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds