Wall clock time and date at job start Sun Mar 29 2020 21:36:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46853 * 2 1 4 4 C 1.50701 * 109.47442 * 239.99660 * 2 1 3 5 5 H 1.07990 * 120.00327 * 240.00095 * 4 2 1 6 6 C 1.37886 * 119.99606 * 59.99720 * 4 2 1 7 7 N 1.31516 * 120.00023 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99723 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47107 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.47148 * 120.00154 * 8 6 4 11 11 H 1.48500 * 109.47170 * 240.00082 * 8 6 4 12 12 N 1.46898 * 109.47230 * 119.99524 * 2 1 3 13 13 C 1.46905 * 111.00079 * 176.04689 * 12 2 1 14 14 C 1.46897 * 111.00262 * 300.00085 * 12 2 1 15 15 C 1.50699 * 109.47181 * 169.99660 * 14 12 2 16 16 N 1.31794 * 119.08252 * 90.00558 * 15 14 12 17 17 C 1.32543 * 121.01091 * 179.72231 * 16 15 14 18 18 C 1.38117 * 119.20217 * 359.97438 * 17 16 15 19 19 C 1.39628 * 118.33224 * 0.02562 * 18 17 16 20 20 N 1.38537 * 120.53195 * 179.97438 * 19 18 17 21 21 N 1.31741 * 119.08643 * 269.73121 * 15 14 12 22 22 H 1.08996 * 109.47178 * 60.00309 * 1 2 3 23 23 H 1.09000 * 109.46853 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.46810 * 300.00195 * 1 2 3 25 25 H 0.96999 * 119.99600 * 179.97438 * 7 6 4 26 26 H 1.09001 * 109.46815 * 183.95425 * 13 12 2 27 27 H 1.09001 * 109.46789 * 303.95855 * 13 12 2 28 28 H 1.08998 * 109.46823 * 63.95366 * 13 12 2 29 29 H 1.09006 * 109.46706 * 49.99882 * 14 12 2 30 30 H 1.09002 * 109.47437 * 290.00012 * 14 12 2 31 31 H 1.08002 * 120.40225 * 179.97438 * 17 16 15 32 32 H 1.08001 * 120.83681 * 180.02562 * 18 17 16 33 33 H 0.96995 * 120.00269 * 0.02562 * 20 19 18 34 34 H 0.97005 * 119.99947 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4828 7 7 0.9435 0.8301 -2.6034 8 14 2.3214 -1.1205 -4.0079 9 1 3.1456 -2.2877 -3.6037 10 1 1.1662 -1.5869 -4.8160 11 1 3.1467 -0.1875 -4.8165 12 7 2.0197 -0.6924 1.1995 13 6 3.4852 -0.7944 1.1871 14 6 1.5487 -0.0262 2.4211 15 6 1.8580 -0.8909 3.6159 16 7 3.0116 -0.7394 4.2349 17 6 3.3208 -1.4756 5.2928 18 6 2.4155 -2.4139 5.7487 19 6 1.2027 -2.5489 5.0701 20 7 0.2619 -3.4761 5.4879 21 7 0.9655 -1.7735 4.0159 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8899 25 1 0.7095 1.1616 -3.4845 26 1 3.8164 -1.3720 2.0501 27 1 3.8070 -1.2914 0.2719 28 1 3.9192 0.2045 1.2300 29 1 0.4722 0.1325 2.3563 30 1 2.0519 0.9348 2.5280 31 1 4.2692 -1.3435 5.7924 32 1 2.6400 -3.0276 6.6085 33 1 0.4430 -4.0376 6.2578 34 1 -0.5782 -3.5632 5.0109 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000269704337.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:05 Heat of formation + Delta-G solvation = 38.946770 kcal Electronic energy + Delta-G solvation = -16624.938233 eV Core-core repulsion = 13978.321541 eV Total energy + Delta-G solvation = -2646.616691 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.84605 -38.75944 -36.46885 -34.90334 -33.74980 -31.74449 -30.81236 -29.10681 -26.85060 -25.47026 -24.50352 -23.27370 -21.28642 -19.08388 -18.56635 -18.03043 -17.14390 -16.64406 -16.24941 -16.15274 -15.72938 -15.51286 -15.03671 -14.62033 -14.28785 -13.88494 -13.52078 -12.97257 -12.84669 -12.73902 -12.56994 -12.44340 -12.10138 -11.95873 -11.90631 -11.42017 -10.97461 -10.79562 -10.49207 -10.09944 -9.27428 -8.98287 -8.09802 -6.21254 0.11941 0.53791 1.42876 1.44282 1.56482 2.41571 2.46266 2.86521 3.17084 3.18805 3.53043 3.63459 4.05918 4.36445 4.39982 4.48570 4.61487 4.68348 4.72710 4.81163 4.96301 5.05649 5.08605 5.23595 5.47482 5.50651 5.72774 5.77084 6.05789 6.25114 6.27757 6.35707 6.66332 6.86945 6.91562 7.47049 7.47549 8.96769 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.039945 B = 0.005709 C = 0.005581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.795762 B = 4903.479189 C = 5015.457770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.217 3.783 3 H -0.031 1.031 4 C -0.518 4.518 5 H 0.057 0.943 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.962 3.038 9 H -0.270 1.270 10 H -0.279 1.279 11 H -0.279 1.279 12 N -0.535 5.535 13 C 0.052 3.948 14 C 0.118 3.882 15 C 0.367 3.633 16 N -0.579 5.579 17 C 0.161 3.839 18 C -0.289 4.289 19 C 0.418 3.582 20 N -0.822 5.822 21 N -0.591 5.591 22 H 0.063 0.937 23 H 0.029 0.971 24 H 0.031 0.969 25 H 0.262 0.738 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.012 0.988 29 H 0.091 0.909 30 H 0.046 0.954 31 H 0.199 0.801 32 H 0.179 0.821 33 H 0.426 0.574 34 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.633 -7.386 17.552 19.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.111 3.889 3 H -0.013 1.013 4 C -0.557 4.557 5 H 0.075 0.925 6 C -0.186 4.186 7 N -0.559 5.559 8 Si 0.788 3.212 9 H -0.194 1.194 10 H -0.205 1.205 11 H -0.205 1.205 12 N -0.260 5.260 13 C -0.097 4.097 14 C -0.012 4.012 15 C 0.098 3.902 16 N -0.299 5.299 17 C 0.000 4.000 18 C -0.317 4.317 19 C 0.171 3.829 20 N -0.367 5.367 21 N -0.317 5.317 22 H 0.082 0.918 23 H 0.048 0.952 24 H 0.050 0.950 25 H 0.072 0.928 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.030 0.970 29 H 0.110 0.890 30 H 0.064 0.936 31 H 0.216 0.784 32 H 0.197 0.803 33 H 0.260 0.740 34 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 1.184 -7.204 16.671 18.199 hybrid contribution 0.341 -0.115 -0.189 0.407 sum 1.525 -7.319 16.481 18.098 Atomic orbital electron populations 1.21657 0.97016 0.99262 0.99811 1.19097 0.92860 0.90421 0.86531 1.01312 1.21397 1.31173 1.12258 0.90834 0.92481 1.25702 0.95333 0.95781 1.01813 1.70024 1.37695 1.24096 1.24058 0.85443 0.78112 0.78531 0.79137 1.19421 1.20486 1.20507 1.62029 1.10502 1.52287 1.01192 1.22095 0.87579 0.98999 1.01004 1.20755 1.01503 0.92766 0.86175 1.22463 0.84905 0.89703 0.93163 1.68295 1.19805 1.30015 1.11831 1.23535 0.99439 0.87758 0.89239 1.22444 0.95292 1.06992 1.06949 1.18976 0.88966 0.87145 0.87782 1.42115 1.19230 1.39325 1.36051 1.67702 1.36774 1.10448 1.16739 0.91783 0.95156 0.95043 0.92843 0.92318 0.92171 0.96978 0.89049 0.93582 0.78443 0.80344 0.74030 0.76044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.13 8.76 71.98 0.63 -5.50 16 2 C 0.22 11.68 2.06 44.17 0.09 11.77 16 3 H -0.03 -1.80 8.14 -2.39 -0.02 -1.82 16 4 C -0.52 -29.58 7.88 25.60 0.20 -29.37 16 5 H 0.06 3.27 6.40 -2.92 -0.02 3.25 16 6 C 0.01 0.70 5.30 84.66 0.45 1.15 16 7 N -0.92 -53.74 11.32 21.45 0.24 -53.50 16 8 Si 0.96 44.63 29.54 68.60 2.03 46.65 16 9 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 10 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 11 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 12 N -0.53 -25.29 4.61 -906.02 -4.18 -29.47 16 13 C 0.05 2.28 9.00 127.69 1.15 3.43 16 14 C 0.12 4.90 5.21 85.56 0.45 5.34 16 15 C 0.37 13.68 6.42 138.77 0.89 14.57 16 16 N -0.58 -19.21 9.24 -188.11 -1.74 -20.95 16 17 C 0.16 3.80 11.29 84.56 0.95 4.75 16 18 C -0.29 -5.83 10.04 22.58 0.23 -5.60 16 19 C 0.42 10.64 7.82 133.16 1.04 11.68 16 20 N -0.82 -13.44 9.06 -55.08 -0.50 -13.94 16 21 N -0.59 -20.51 10.37 -185.44 -1.92 -22.43 16 22 H 0.06 3.56 6.07 -2.39 -0.01 3.55 16 23 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 24 H 0.03 1.43 6.20 -2.39 -0.01 1.41 16 25 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 26 H 0.06 2.40 6.55 -2.39 -0.02 2.38 16 27 H 0.06 2.79 6.10 -2.39 -0.01 2.78 16 28 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.09 3.82 5.83 -2.38 -0.01 3.81 16 30 H 0.05 1.91 8.12 -2.39 -0.02 1.89 16 31 H 0.20 2.93 8.06 -2.91 -0.02 2.91 16 32 H 0.18 1.94 8.06 -2.91 -0.02 1.92 16 33 H 0.43 3.60 8.84 -92.71 -0.82 2.78 16 34 H 0.41 6.67 8.95 -92.70 -0.83 5.84 16 Total: -1.00 -69.87 281.17 -0.51 -70.38 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -0.52 Total: 11.04 kcal Atomic # 6 Polarization: 6.13 SS G_CDS: 6.08 Total: 12.22 kcal Atomic # 7 Polarization: -132.19 SS G_CDS: -8.10 Total: -140.29 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.65 kcal Total: -69.87 -0.51 -70.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269704337.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.324 kcal (2) G-P(sol) polarization free energy of solvation -69.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds