Wall clock time and date at job start Sun Mar 29 2020 21:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47363 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47233 * 120.00158 * 8 6 4 11 11 H 1.48508 * 109.46883 * 239.99963 * 8 6 4 12 12 N 1.46902 * 109.47094 * 239.99537 * 2 1 3 13 13 C 1.46894 * 111.00124 * 306.04840 * 12 2 1 14 14 C 1.46901 * 110.99644 * 70.00221 * 12 2 1 15 15 C 1.50700 * 109.47327 * 169.99950 * 14 12 2 16 16 N 1.31784 * 119.08540 * 89.99836 * 15 14 12 17 17 C 1.32555 * 121.01452 * 180.02562 * 16 15 14 18 18 C 1.38123 * 119.19463 * 0.02562 * 17 16 15 19 19 C 1.39622 * 118.33473 * 0.02562 * 18 17 16 20 20 N 1.38542 * 120.52919 * 180.02562 * 19 18 17 21 21 N 1.31758 * 119.08422 * 269.73635 * 15 14 12 22 22 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 23 23 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 24 24 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 25 25 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 26 26 H 1.09007 * 109.47149 * 60.00173 * 13 12 2 27 27 H 1.09002 * 109.47016 * 179.97438 * 13 12 2 28 28 H 1.08993 * 109.47669 * 299.99609 * 13 12 2 29 29 H 1.08997 * 109.47179 * 289.99729 * 14 12 2 30 30 H 1.09000 * 109.47307 * 50.00140 * 14 12 2 31 31 H 1.07995 * 120.40314 * 179.97438 * 17 16 15 32 32 H 1.07998 * 120.82940 * 179.97438 * 18 17 16 33 33 H 0.96995 * 119.99935 * 359.97438 * 20 19 18 34 34 H 0.96999 * 119.99474 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.1474 -2.2863 3.6038 10 1 3.1473 -0.1857 4.8160 11 1 1.1678 -1.5865 4.8165 12 7 2.0196 -0.6926 -1.1994 13 6 1.4343 -2.0355 -1.3077 14 6 1.7529 0.0971 -2.4090 15 6 2.4773 -0.5164 -3.5794 16 7 1.8658 -1.4330 -4.3023 17 6 2.4672 -1.9981 -5.3396 18 6 3.7549 -1.6162 -5.6621 19 6 4.3742 -0.6433 -4.8751 20 7 5.6647 -0.2260 -5.1580 21 7 3.7026 -0.1177 -3.8547 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 0.7082 1.1609 3.4844 26 1 0.3489 -1.9549 -1.3693 27 1 1.8133 -2.5258 -2.2044 28 1 1.7058 -2.6222 -0.4302 29 1 0.6814 0.1052 -2.6087 30 1 2.1025 1.1188 -2.2604 31 1 1.9570 -2.7486 -5.9250 32 1 4.2699 -2.0596 -6.5014 33 1 6.1454 -0.6105 -5.9076 34 1 6.0877 0.4501 -4.6059 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269704339.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:07 Heat of formation + Delta-G solvation = 62.238678 kcal Electronic energy + Delta-G solvation = -16626.444815 eV Core-core repulsion = 13980.838137 eV Total energy + Delta-G solvation = -2645.606678 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.70614 -37.15861 -35.41575 -33.11329 -32.33161 -30.49675 -28.62444 -27.11428 -25.15051 -24.32988 -23.41034 -21.83601 -19.21087 -18.02352 -17.20789 -16.04952 -15.70758 -15.42680 -15.18985 -14.61443 -14.05379 -13.88892 -13.41870 -13.34190 -12.53821 -12.28818 -11.67643 -11.47537 -10.97534 -10.93513 -10.79496 -10.60458 -10.47336 -10.35983 -9.96428 -9.85965 -9.63445 -8.93072 -8.82164 -8.33302 -8.31509 -7.09190 -5.94996 -3.97772 1.24757 1.59917 3.34554 3.36238 3.42081 3.47431 4.07269 4.38822 4.49407 4.56449 5.02173 5.27315 5.32337 5.38013 5.58737 5.72737 6.11015 6.19110 6.37231 6.53111 6.56192 6.77494 6.91679 6.97904 7.02451 7.18427 7.20769 7.51537 7.70970 7.78617 7.90448 8.18313 8.43680 8.60423 8.64116 9.08089 9.66613 11.12307 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.037649 B = 0.005799 C = 0.005524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.531568 B = 4827.279713 C = 5067.577501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.212 3.788 3 H 0.041 0.959 4 C -0.494 4.494 5 H 0.062 0.938 6 C 0.057 3.943 7 N -0.895 5.895 8 Si 0.896 3.104 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.286 1.286 12 N -0.525 5.525 13 C 0.036 3.964 14 C 0.117 3.883 15 C 0.388 3.612 16 N -0.556 5.556 17 C 0.173 3.827 18 C -0.309 4.309 19 C 0.435 3.565 20 N -0.841 5.841 21 N -0.560 5.560 22 H 0.008 0.992 23 H 0.089 0.911 24 H 0.033 0.967 25 H 0.259 0.741 26 H 0.023 0.977 27 H 0.045 0.955 28 H 0.068 0.932 29 H 0.055 0.945 30 H 0.091 0.909 31 H 0.161 0.839 32 H 0.135 0.865 33 H 0.408 0.592 34 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.122 -3.286 -15.786 16.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.106 3.894 3 H 0.059 0.941 4 C -0.532 4.532 5 H 0.080 0.920 6 C -0.143 4.143 7 N -0.535 5.535 8 Si 0.725 3.275 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.212 1.212 12 N -0.250 5.250 13 C -0.113 4.113 14 C -0.013 4.013 15 C 0.119 3.881 16 N -0.274 5.274 17 C 0.010 3.990 18 C -0.337 4.337 19 C 0.189 3.811 20 N -0.385 5.385 21 N -0.284 5.284 22 H 0.027 0.973 23 H 0.107 0.893 24 H 0.052 0.948 25 H 0.069 0.931 26 H 0.042 0.958 27 H 0.063 0.937 28 H 0.087 0.913 29 H 0.073 0.927 30 H 0.109 0.891 31 H 0.178 0.822 32 H 0.152 0.848 33 H 0.237 0.763 34 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 5.057 -2.830 -14.837 15.929 hybrid contribution 0.351 -0.673 -0.126 0.769 sum 5.408 -3.503 -14.963 16.291 Atomic orbital electron populations 1.22415 1.00630 0.99620 1.00559 1.19354 0.89896 0.94565 0.85569 0.94111 1.21125 1.30252 1.12359 0.89510 0.91975 1.24915 0.95323 0.95181 0.98930 1.69896 1.37236 1.23149 1.23212 0.86465 0.78492 0.79646 0.82933 1.19823 1.21111 1.21210 1.62342 1.59023 1.02547 1.01060 1.22252 0.96875 0.91466 1.00687 1.20800 0.96281 0.97427 0.86828 1.23073 0.85616 0.86893 0.92490 1.68365 1.38808 1.12286 1.07988 1.22852 0.90614 0.94252 0.91265 1.22007 0.99637 1.05822 1.06282 1.18581 0.86284 0.87848 0.88408 1.42137 1.12701 1.47259 1.36426 1.67859 1.10422 1.31799 1.18293 0.97309 0.89287 0.94783 0.93118 0.95826 0.93671 0.91325 0.92717 0.89105 0.82216 0.84751 0.76254 0.76318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.26 8.22 37.16 0.31 -3.95 16 2 C 0.21 5.47 2.31 -68.86 -0.16 5.31 16 3 H 0.04 1.14 7.93 -51.93 -0.41 0.73 16 4 C -0.49 -13.82 7.97 -34.44 -0.27 -14.09 16 5 H 0.06 1.77 7.10 -52.49 -0.37 1.39 16 6 C 0.06 1.60 5.30 -17.82 -0.09 1.50 16 7 N -0.90 -25.73 11.32 55.43 0.63 -25.10 16 8 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 9 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 N -0.53 -12.04 4.69 -237.73 -1.12 -13.16 16 13 C 0.04 0.77 8.59 60.06 0.52 1.28 16 14 C 0.12 2.35 4.97 -4.98 -0.02 2.33 16 15 C 0.39 7.23 6.42 -157.23 -1.01 6.22 16 16 N -0.56 -9.46 9.13 -10.81 -0.10 -9.56 16 17 C 0.17 2.29 11.29 -17.28 -0.20 2.09 16 18 C -0.31 -3.69 10.04 -39.11 -0.39 -4.09 16 19 C 0.43 6.06 7.82 -154.78 -1.21 4.85 16 20 N -0.84 -8.10 9.06 31.24 0.28 -7.81 16 21 N -0.56 -9.92 10.37 -9.96 -0.10 -10.03 16 22 H 0.01 0.18 6.91 -51.93 -0.36 -0.18 16 23 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16 24 H 0.03 0.81 6.33 -51.93 -0.33 0.49 16 25 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 26 H 0.02 0.50 6.21 -51.92 -0.32 0.17 16 27 H 0.04 0.91 6.33 -51.93 -0.33 0.58 16 28 H 0.07 1.55 6.86 -51.93 -0.36 1.19 16 29 H 0.05 1.08 7.06 -51.93 -0.37 0.72 16 30 H 0.09 1.82 7.93 -51.93 -0.41 1.41 16 31 H 0.16 1.50 8.06 -52.49 -0.42 1.08 16 32 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 33 H 0.41 2.49 8.84 -40.82 -0.36 2.13 16 34 H 0.41 3.77 8.95 -40.82 -0.37 3.40 16 LS Contribution 279.31 15.07 4.21 4.21 Total: -1.00 -31.73 279.31 -8.04 -39.77 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -4.28 Total: 3.53 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: -2.54 Total: 1.45 kcal Atomic # 7 Polarization: -65.25 SS G_CDS: -0.41 Total: -65.66 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -31.73 -8.04 -39.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269704339.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.012 kcal (2) G-P(sol) polarization free energy of solvation -31.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds