Wall clock time and date at job start Sun Mar 29 2020 21:36:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47363 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47233 * 120.00158 * 8 6 4 11 11 H 1.48508 * 109.46883 * 239.99963 * 8 6 4 12 12 N 1.46902 * 109.47094 * 239.99537 * 2 1 3 13 13 C 1.46894 * 111.00124 * 306.04840 * 12 2 1 14 14 C 1.46901 * 110.99644 * 70.00221 * 12 2 1 15 15 C 1.50700 * 109.47327 * 169.99950 * 14 12 2 16 16 N 1.31784 * 119.08540 * 89.99836 * 15 14 12 17 17 C 1.32555 * 121.01452 * 180.02562 * 16 15 14 18 18 C 1.38123 * 119.19463 * 0.02562 * 17 16 15 19 19 C 1.39622 * 118.33473 * 0.02562 * 18 17 16 20 20 N 1.38542 * 120.52919 * 180.02562 * 19 18 17 21 21 N 1.31758 * 119.08422 * 269.73635 * 15 14 12 22 22 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 23 23 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 24 24 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 25 25 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 26 26 H 1.09007 * 109.47149 * 60.00173 * 13 12 2 27 27 H 1.09002 * 109.47016 * 179.97438 * 13 12 2 28 28 H 1.08993 * 109.47669 * 299.99609 * 13 12 2 29 29 H 1.08997 * 109.47179 * 289.99729 * 14 12 2 30 30 H 1.09000 * 109.47307 * 50.00140 * 14 12 2 31 31 H 1.07995 * 120.40314 * 179.97438 * 17 16 15 32 32 H 1.07998 * 120.82940 * 179.97438 * 18 17 16 33 33 H 0.96995 * 119.99935 * 359.97438 * 20 19 18 34 34 H 0.96999 * 119.99474 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.1474 -2.2863 3.6038 10 1 3.1473 -0.1857 4.8160 11 1 1.1678 -1.5865 4.8165 12 7 2.0196 -0.6926 -1.1994 13 6 1.4343 -2.0355 -1.3077 14 6 1.7529 0.0971 -2.4090 15 6 2.4773 -0.5164 -3.5794 16 7 1.8658 -1.4330 -4.3023 17 6 2.4672 -1.9981 -5.3396 18 6 3.7549 -1.6162 -5.6621 19 6 4.3742 -0.6433 -4.8751 20 7 5.6647 -0.2260 -5.1580 21 7 3.7026 -0.1177 -3.8547 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 0.7082 1.1609 3.4844 26 1 0.3489 -1.9549 -1.3693 27 1 1.8133 -2.5258 -2.2044 28 1 1.7058 -2.6222 -0.4302 29 1 0.6814 0.1052 -2.6087 30 1 2.1025 1.1188 -2.2604 31 1 1.9570 -2.7486 -5.9250 32 1 4.2699 -2.0596 -6.5014 33 1 6.1454 -0.6105 -5.9076 34 1 6.0877 0.4501 -4.6059 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000269704339.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:06 Heat of formation + Delta-G solvation = 38.650707 kcal Electronic energy + Delta-G solvation = -16627.467666 eV Core-core repulsion = 13980.838137 eV Total energy + Delta-G solvation = -2646.629530 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.84794 -38.92144 -36.47909 -34.87355 -33.77526 -31.75390 -30.36769 -28.70198 -27.25813 -25.93542 -24.51063 -23.26444 -21.09177 -19.07500 -18.45669 -17.97636 -17.14955 -16.66491 -16.37191 -16.14512 -15.57812 -15.38612 -15.09405 -14.64543 -14.34006 -13.96040 -13.38191 -12.98947 -12.86394 -12.66911 -12.53943 -12.42794 -12.27126 -12.03496 -11.92472 -11.43735 -10.97779 -10.80342 -10.47462 -10.09990 -9.27286 -8.89326 -8.08602 -6.19111 0.12189 0.53783 1.42983 1.44398 1.56668 2.42312 2.46714 2.87318 3.17688 3.20318 3.53920 3.66483 4.05902 4.36565 4.41493 4.49345 4.61467 4.70598 4.74600 4.81467 4.87331 4.94955 5.14334 5.17216 5.47774 5.52346 5.71940 5.80192 6.05925 6.19597 6.27558 6.46479 6.67333 6.86754 6.92456 7.47526 7.49383 8.97923 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.037649 B = 0.005799 C = 0.005524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.531568 B = 4827.279713 C = 5067.577501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.217 3.783 3 H 0.010 0.990 4 C -0.512 4.512 5 H 0.052 0.948 6 C 0.012 3.988 7 N -0.920 5.920 8 Si 0.961 3.039 9 H -0.271 1.271 10 H -0.280 1.280 11 H -0.279 1.279 12 N -0.536 5.536 13 C 0.049 3.951 14 C 0.123 3.877 15 C 0.367 3.633 16 N -0.577 5.577 17 C 0.162 3.838 18 C -0.289 4.289 19 C 0.418 3.582 20 N -0.822 5.822 21 N -0.593 5.593 22 H 0.026 0.974 23 H 0.064 0.936 24 H 0.035 0.965 25 H 0.262 0.738 26 H 0.024 0.976 27 H 0.058 0.942 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.080 0.920 31 H 0.200 0.800 32 H 0.179 0.821 33 H 0.426 0.574 34 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.097 -4.700 -17.378 19.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.110 3.890 3 H 0.028 0.972 4 C -0.550 4.550 5 H 0.070 0.930 6 C -0.186 4.186 7 N -0.560 5.560 8 Si 0.786 3.214 9 H -0.196 1.196 10 H -0.206 1.206 11 H -0.204 1.204 12 N -0.261 5.261 13 C -0.099 4.099 14 C -0.007 4.007 15 C 0.097 3.903 16 N -0.297 5.297 17 C 0.001 3.999 18 C -0.317 4.317 19 C 0.171 3.829 20 N -0.368 5.368 21 N -0.319 5.319 22 H 0.045 0.955 23 H 0.083 0.917 24 H 0.054 0.946 25 H 0.071 0.929 26 H 0.042 0.958 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.098 0.902 31 H 0.216 0.784 32 H 0.196 0.804 33 H 0.260 0.740 34 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 6.071 -4.258 -16.486 18.077 hybrid contribution 0.141 -0.223 0.216 0.341 sum 6.212 -4.482 -16.269 17.983 Atomic orbital electron populations 1.22202 0.99854 0.99482 1.00170 1.19112 0.90363 0.92957 0.86553 0.97228 1.21329 1.30542 1.12337 0.90832 0.92975 1.25669 0.95410 0.95841 1.01709 1.70014 1.37835 1.24130 1.23985 0.85467 0.78083 0.78534 0.79269 1.19571 1.20620 1.20433 1.62190 1.59337 1.03199 1.01325 1.22115 0.96764 0.90589 1.00478 1.20642 0.96620 0.96779 0.86663 1.22500 0.86345 0.88542 0.92908 1.68290 1.39573 1.12497 1.09370 1.23547 0.91433 0.94497 0.90461 1.22443 0.99031 1.03971 1.06254 1.18982 0.87426 0.88437 0.88053 1.42121 1.11264 1.46694 1.36688 1.67717 1.10602 1.33191 1.20405 0.95523 0.91700 0.94628 0.92903 0.95758 0.92313 0.92874 0.92807 0.90208 0.78374 0.80359 0.74030 0.76074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.92 8.22 71.98 0.59 -7.33 16 2 C 0.22 11.53 2.31 44.17 0.10 11.64 16 3 H 0.01 0.57 7.93 -2.39 -0.02 0.55 16 4 C -0.51 -29.23 7.97 25.60 0.20 -29.03 16 5 H 0.05 3.02 7.10 -2.91 -0.02 3.00 16 6 C 0.01 0.68 5.30 84.66 0.45 1.13 16 7 N -0.92 -53.68 11.32 21.45 0.24 -53.43 16 8 Si 0.96 44.79 29.54 68.60 2.03 46.81 16 9 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 10 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 11 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 12 N -0.54 -25.12 4.69 -906.05 -4.25 -29.37 16 13 C 0.05 2.11 8.59 127.69 1.10 3.21 16 14 C 0.12 5.07 4.97 85.56 0.43 5.49 16 15 C 0.37 13.60 6.42 138.76 0.89 14.49 16 16 N -0.58 -18.89 9.13 -188.10 -1.72 -20.61 16 17 C 0.16 3.77 11.29 84.56 0.95 4.72 16 18 C -0.29 -5.83 10.04 22.58 0.23 -5.61 16 19 C 0.42 10.71 7.82 133.16 1.04 11.76 16 20 N -0.82 -13.69 9.06 -55.09 -0.50 -14.19 16 21 N -0.59 -20.75 10.37 -185.44 -1.92 -22.67 16 22 H 0.03 1.19 6.91 -2.39 -0.02 1.17 16 23 H 0.06 3.58 6.07 -2.39 -0.01 3.56 16 24 H 0.03 1.72 6.33 -2.38 -0.02 1.71 16 25 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 26 H 0.02 1.02 6.21 -2.38 -0.01 1.01 16 27 H 0.06 2.35 6.33 -2.39 -0.02 2.34 16 28 H 0.05 2.42 6.86 -2.39 -0.02 2.40 16 29 H 0.05 2.17 7.06 -2.39 -0.02 2.16 16 30 H 0.08 3.36 7.93 -2.39 -0.02 3.34 16 31 H 0.20 2.88 8.06 -2.91 -0.02 2.86 16 32 H 0.18 1.94 8.06 -2.91 -0.02 1.92 16 33 H 0.43 3.70 8.84 -92.71 -0.82 2.88 16 34 H 0.41 6.82 8.95 -92.71 -0.83 5.99 16 Total: -1.00 -69.48 279.31 -0.66 -70.14 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -0.51 Total: 12.85 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: 5.98 Total: 10.46 kcal Atomic # 7 Polarization: -132.12 SS G_CDS: -8.15 Total: -140.27 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.81 kcal Total: -69.48 -0.66 -70.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269704339.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.791 kcal (2) G-P(sol) polarization free energy of solvation -69.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds