Wall clock time and date at job start Sun Mar 29 2020 22:10:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30668 * 1 3 3 Si 1.86808 * 119.99695 * 2 1 4 4 H 1.48501 * 109.46665 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46869 * 299.99144 * 3 2 1 6 6 H 1.48493 * 109.47305 * 59.99199 * 3 2 1 7 7 C 1.40045 * 120.00214 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99992 * 180.02562 * 7 2 1 9 9 C 1.46368 * 119.99878 * 0.02562 * 7 2 1 10 10 O 1.21686 * 120.00282 * 0.27411 * 9 7 2 11 11 N 1.34784 * 119.99821 * 180.02562 * 9 7 2 12 12 C 1.47072 * 121.08820 * 179.97438 * 11 9 7 13 13 C 1.53002 * 108.94893 * 115.15094 * 12 11 9 14 14 C 1.52250 * 109.18202 * 46.95279 * 13 12 11 15 15 C 1.39294 * 123.33729 * 160.94129 * 14 13 12 16 16 C 1.32907 * 115.75961 * 179.72259 * 15 14 13 17 17 S 1.75732 * 109.57663 * 0.06209 * 16 15 14 18 18 C 1.34632 * 123.14805 * 340.87230 * 14 13 12 19 19 C 1.47188 * 121.09181 * 359.72372 * 11 9 7 20 20 H 0.97000 * 120.00448 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.55590 * 234.98969 * 12 11 9 22 22 H 1.08998 * 109.56039 * 355.31250 * 12 11 9 23 23 H 1.09005 * 109.52220 * 166.86218 * 13 12 11 24 24 H 1.09000 * 109.52032 * 286.98379 * 13 12 11 25 25 H 1.07997 * 122.12150 * 359.70316 * 15 14 13 26 26 H 1.08000 * 125.20997 * 180.02562 * 16 15 14 27 27 H 1.08999 * 109.83223 * 343.19025 * 19 11 9 28 28 H 1.09001 * 109.83758 * 104.14820 * 19 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6179 0.0000 4 1 3.7006 1.3465 0.0006 5 1 1.8820 2.3964 -1.2126 6 1 1.8817 2.3966 1.2123 7 6 2.0069 -1.2128 0.0005 8 1 3.0869 -1.2128 0.0010 9 6 1.2751 -2.4804 0.0005 10 8 0.0583 -2.4805 -0.0050 11 7 1.9491 -3.6476 0.0016 12 6 1.2381 -4.9351 0.0022 13 6 1.5368 -5.6682 -1.3071 14 6 3.0345 -5.6204 -1.5768 15 6 3.6834 -6.4912 -2.4491 16 6 4.9942 -6.3114 -2.5758 17 16 5.5067 -4.9756 -1.5555 18 6 3.8593 -4.7298 -0.9945 19 6 3.4207 -3.6756 -0.0033 20 1 -0.4851 0.8400 -0.0004 21 1 1.5773 -5.5388 0.8440 22 1 0.1656 -4.7596 0.0856 23 1 1.2145 -6.7063 -1.2251 24 1 1.0030 -5.1847 -2.1253 25 1 3.1551 -7.2637 -2.9880 26 1 5.6447 -6.8971 -3.2084 27 1 3.8081 -2.7022 -0.3040 28 1 3.7892 -3.9304 0.9904 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274841233.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:32 Heat of formation + Delta-G solvation = -23.581543 kcal Electronic energy + Delta-G solvation = -14482.299182 eV Core-core repulsion = 12009.879423 eV Total energy + Delta-G solvation = -2472.419759 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 237.056 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.51660 -38.63731 -35.97363 -34.66250 -32.51188 -30.92753 -28.54091 -26.03799 -24.94552 -22.87349 -21.33696 -19.51420 -18.35616 -17.84766 -17.39651 -16.50458 -16.09589 -15.81944 -15.53170 -14.78433 -14.33854 -14.07101 -13.87617 -13.52575 -13.31744 -13.15041 -12.81523 -12.68933 -12.53113 -12.19062 -12.02864 -11.93054 -11.49863 -10.96559 -9.88930 -9.48464 -9.21374 -9.13992 -8.31793 -6.88008 0.11355 0.70358 1.12389 1.38979 1.39280 1.57082 1.79271 2.22355 2.42967 2.77920 3.54453 3.84266 3.94469 4.17588 4.33287 4.37341 4.56681 4.58829 4.71340 4.79022 4.87851 5.08616 5.19666 5.33359 5.50744 5.61639 5.69747 6.05309 6.34002 6.84756 7.34307 8.41620 8.63932 Molecular weight = 237.06amu Principal moments of inertia in cm(-1) A = 0.031823 B = 0.007867 C = 0.006620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.642098 B = 3558.359202 C = 4228.770613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.030 3.970 3 Si 0.995 3.005 4 H -0.245 1.245 5 H -0.269 1.269 6 H -0.267 1.267 7 C -0.569 4.569 8 H 0.091 0.909 9 C 0.543 3.457 10 O -0.628 6.628 11 N -0.643 5.643 12 C 0.114 3.886 13 C -0.063 4.063 14 C -0.111 4.111 15 C -0.137 4.137 16 C -0.208 4.208 17 S 0.115 5.885 18 C -0.218 4.218 19 C 0.194 3.806 20 H 0.275 0.725 21 H 0.070 0.930 22 H 0.061 0.939 23 H 0.109 0.891 24 H 0.056 0.944 25 H 0.160 0.840 26 H 0.197 0.803 27 H 0.091 0.909 28 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.162 -10.283 -3.712 16.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.185 4.185 3 Si 0.814 3.186 4 H -0.168 1.168 5 H -0.194 1.194 6 H -0.192 1.192 7 C -0.605 4.605 8 H 0.109 0.891 9 C 0.350 3.650 10 O -0.515 6.515 11 N -0.380 5.380 12 C -0.009 4.009 13 C -0.103 4.103 14 C -0.124 4.124 15 C -0.167 4.167 16 C -0.343 4.343 17 S 0.379 5.621 18 C -0.335 4.335 19 C 0.068 3.932 20 H 0.085 0.915 21 H 0.089 0.911 22 H 0.079 0.921 23 H 0.128 0.872 24 H 0.074 0.926 25 H 0.177 0.823 26 H 0.214 0.786 27 H 0.109 0.891 28 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 12.755 -9.513 -3.421 16.275 hybrid contribution -1.464 0.065 -0.238 1.485 sum 11.291 -9.447 -3.659 15.170 Atomic orbital electron populations 1.70187 1.09536 1.28952 1.36262 1.26979 0.95509 1.04896 0.91130 0.85013 0.79496 0.75477 0.78626 1.16823 1.19353 1.19164 1.21506 0.94710 0.89797 1.54490 0.89097 1.18621 0.86605 0.83869 0.75905 1.90540 1.16008 1.87216 1.57715 1.48117 1.05553 1.05457 1.78867 1.21278 0.97529 0.84799 0.97323 1.20820 0.90664 1.01650 0.97199 1.19779 0.96574 0.96754 0.99244 1.20216 0.94378 1.01584 1.00557 1.25734 0.99247 1.02982 1.06289 1.83859 1.06028 1.31298 1.40886 1.25246 0.97937 1.03799 1.06562 1.19996 0.80871 0.96513 0.95770 0.91505 0.91142 0.92051 0.87238 0.92589 0.82303 0.78604 0.89148 0.90578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.52 11.83 21.83 0.26 -50.26 15 2 C 0.03 1.69 5.50 85.30 0.47 2.16 15 3 Si 0.99 41.03 29.56 68.60 2.03 43.06 15 4 H -0.25 -9.31 7.11 99.48 0.71 -8.60 15 5 H -0.27 -10.70 7.11 99.48 0.71 -9.99 15 6 H -0.27 -10.56 7.11 99.48 0.71 -9.85 15 7 C -0.57 -32.56 8.84 24.83 0.22 -32.34 15 8 H 0.09 4.67 5.83 -2.91 -0.02 4.66 15 9 C 0.54 32.37 7.65 86.36 0.66 33.03 15 10 O -0.63 -42.80 14.47 -4.30 -0.06 -42.86 15 11 N -0.64 -30.67 2.95 -827.09 -2.44 -33.11 15 12 C 0.11 4.63 6.35 86.27 0.55 5.17 15 13 C -0.06 -2.10 6.32 30.35 0.19 -1.90 15 14 C -0.11 -3.53 5.80 -19.94 -0.12 -3.65 15 15 C -0.14 -3.38 9.99 21.35 0.21 -3.17 15 16 C -0.21 -4.46 11.20 66.65 0.75 -3.71 15 17 S 0.12 2.94 23.31 -56.49 -1.32 1.62 15 18 C -0.22 -7.29 6.43 25.02 0.16 -7.13 15 19 C 0.19 7.56 6.57 85.66 0.56 8.12 15 20 H 0.27 15.27 8.29 -92.71 -0.77 14.50 15 21 H 0.07 2.50 8.14 -2.39 -0.02 2.48 15 22 H 0.06 2.81 7.03 -2.39 -0.02 2.80 15 23 H 0.11 2.78 8.14 -2.38 -0.02 2.76 15 24 H 0.06 2.07 8.14 -2.39 -0.02 2.05 15 25 H 0.16 3.04 8.06 -2.91 -0.02 3.01 15 26 H 0.20 2.74 8.06 -2.91 -0.02 2.72 15 27 H 0.09 3.69 5.65 -2.39 -0.01 3.68 15 28 H 0.08 2.69 8.14 -2.39 -0.02 2.67 15 Total: -1.00 -75.40 253.59 3.30 -72.10 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: 1.18 Total: 12.88 kcal Atomic # 6 Polarization: -7.08 SS G_CDS: 3.66 Total: -3.42 kcal Atomic # 7 Polarization: -81.19 SS G_CDS: -2.18 Total: -83.38 kcal Atomic # 8 Polarization: -42.80 SS G_CDS: -0.06 Total: -42.86 kcal Atomic # 14 Polarization: 41.03 SS G_CDS: 2.03 Total: 43.06 kcal Atomic # 16 Polarization: 2.94 SS G_CDS: -1.32 Total: 1.62 kcal Total: -75.40 3.30 -72.10 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274841233.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.516 kcal (2) G-P(sol) polarization free energy of solvation -75.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds