Wall clock time and date at job start Sun Mar 29 2020 22:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47193 * 1 3 3 C 1.17401 * 179.97438 * 2 1 4 4 C 1.47204 * 179.97438 * 333.67849 * 3 2 1 5 5 S 1.81001 * 109.47167 * 311.12901 * 4 3 2 6 6 C 1.76202 * 99.99784 * 180.02562 * 5 4 3 7 7 N 1.32388 * 126.26021 * 359.97438 * 6 5 4 8 8 N 1.28516 * 110.20609 * 180.02562 * 7 6 5 9 9 C 1.33098 * 109.74302 * 0.02562 * 8 7 6 10 10 C 1.39776 * 126.56257 * 179.97438 * 9 8 7 11 11 H 1.07999 * 119.99778 * 186.09356 * 10 9 8 12 12 C 1.40085 * 120.00068 * 6.08606 * 10 9 8 13 13 N 1.30808 * 119.99942 * 184.12744 * 12 10 9 14 14 Si 1.86799 * 119.99669 * 4.13543 * 12 10 9 15 15 H 1.48509 * 109.46950 * 179.97438 * 14 12 10 16 16 H 1.48495 * 109.47355 * 299.99259 * 14 12 10 17 17 H 1.48501 * 109.47215 * 59.99928 * 14 12 10 18 18 N 1.36669 * 126.25987 * 180.30691 * 6 5 4 19 19 C 1.46505 * 127.15024 * 359.97438 * 18 6 5 20 20 H 1.09001 * 109.47459 * 255.18826 * 1 2 3 21 21 H 1.09002 * 109.47523 * 15.18660 * 1 2 3 22 22 H 1.09006 * 109.47290 * 135.19010 * 1 2 3 23 23 H 1.09003 * 109.46349 * 191.13096 * 4 3 2 24 24 H 1.08993 * 109.47219 * 71.13494 * 4 3 2 25 25 H 0.97000 * 120.00392 * 354.84969 * 13 12 10 26 26 H 1.08991 * 109.47295 * 270.14314 * 19 18 6 27 27 H 1.08996 * 109.46934 * 30.14387 * 19 18 6 28 28 H 1.09000 * 109.46691 * 150.13746 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4719 0.0000 0.0000 3 6 2.6459 0.0005 0.0000 4 6 4.1180 0.0006 0.0003 5 16 4.7211 -1.1218 1.2858 6 6 6.4591 -0.9304 1.0682 7 7 7.0559 -0.1531 0.1781 8 7 8.3326 -0.2498 0.2894 9 6 8.6355 -1.1025 1.2654 10 6 9.9183 -1.4680 1.6834 11 1 10.0443 -2.2455 2.4223 12 6 11.0403 -0.8259 1.1438 13 7 12.2424 -1.2221 1.4741 14 14 10.8197 0.5962 -0.0472 15 1 12.1517 1.0991 -0.4697 16 1 10.0649 0.1316 -1.2386 17 1 10.0676 1.6888 0.6204 18 7 7.4377 -1.5621 1.7832 19 6 7.2561 -2.5238 2.8734 20 1 -0.3634 -0.2627 0.9935 21 1 -0.3634 0.9918 -0.2692 22 1 -0.3634 -0.7291 -0.7243 23 1 4.4811 1.0090 0.1988 24 1 4.4815 -0.3317 -0.9720 25 1 12.3583 -1.9097 2.1484 26 1 7.2091 -1.9915 3.8233 27 1 6.3289 -3.0759 2.7200 28 1 8.0951 -3.2194 2.8877 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279826215.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:16 Heat of formation + Delta-G solvation = 95.909963 kcal Electronic energy + Delta-G solvation = -13672.965739 eV Core-core repulsion = 11238.020272 eV Total energy + Delta-G solvation = -2434.945467 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 237.063 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.96793 -34.67243 -33.96088 -33.60285 -30.78978 -30.00318 -26.89191 -26.45305 -25.21859 -21.48750 -20.29515 -18.23421 -17.33419 -16.00687 -15.42135 -15.14929 -14.52828 -14.37740 -13.87938 -13.62278 -13.53610 -13.39810 -13.10088 -12.69176 -12.61764 -11.98610 -11.21395 -10.93960 -10.69320 -9.98303 -9.92205 -9.70578 -9.56889 -9.41544 -9.11733 -8.70898 -8.42508 -7.45426 -7.15070 -4.87584 1.45402 2.45755 2.64763 2.87016 3.07400 3.55621 3.57918 3.84763 4.02292 4.09883 4.12179 4.39549 5.08016 5.28254 5.35483 5.36491 5.45127 5.48997 5.61125 5.70553 5.81996 5.88676 6.33302 6.61028 7.08337 7.36960 7.48612 7.53591 8.01698 8.31577 8.52303 9.93229 10.06920 Molecular weight = 237.06amu Principal moments of inertia in cm(-1) A = 0.048237 B = 0.005828 C = 0.005231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.332821 B = 4803.148321 C = 5351.787655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 C -0.172 4.172 3 C -0.170 4.170 4 C 0.019 3.981 5 S -0.027 6.027 6 C 0.062 3.938 7 N -0.269 5.269 8 N -0.415 5.415 9 C 0.345 3.655 10 C -0.490 4.490 11 H 0.083 0.917 12 C 0.064 3.936 13 N -0.806 5.806 14 Si 1.112 2.888 15 H -0.311 1.311 16 H -0.260 1.260 17 H -0.280 1.280 18 N -0.512 5.512 19 C 0.101 3.899 20 H 0.081 0.919 21 H 0.080 0.920 22 H 0.080 0.920 23 H 0.114 0.886 24 H 0.114 0.886 25 H 0.283 0.717 26 H 0.061 0.939 27 H 0.070 0.930 28 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.635 -0.716 0.966 15.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.176 4.176 3 C -0.172 4.172 4 C -0.129 4.129 5 S 0.202 5.798 6 C -0.312 4.312 7 N -0.113 5.113 8 N -0.265 5.265 9 C 0.102 3.898 10 C -0.531 4.531 11 H 0.101 0.899 12 C -0.159 4.159 13 N -0.430 5.430 14 Si 0.941 3.059 15 H -0.241 1.241 16 H -0.186 1.186 17 H -0.207 1.207 18 N -0.213 5.213 19 C -0.043 4.043 20 H 0.100 0.900 21 H 0.099 0.901 22 H 0.098 0.902 23 H 0.133 0.867 24 H 0.132 0.868 25 H 0.095 0.905 26 H 0.079 0.921 27 H 0.089 0.911 28 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -15.166 0.558 -0.299 15.180 hybrid contribution -0.121 -1.575 1.517 2.190 sum -15.287 -1.017 1.217 15.369 Atomic orbital electron populations 1.18861 0.84309 1.03045 1.03121 1.22274 0.93660 1.00990 1.00701 1.21213 0.92245 1.01792 1.01940 1.20069 0.87111 1.03555 1.02138 1.84806 0.90890 1.57954 1.46114 1.25437 0.94965 1.07330 1.03483 1.74251 1.01920 1.17414 1.17721 1.73991 1.04198 1.26225 1.22078 1.21726 0.86812 0.91082 0.90134 1.19401 0.87891 1.20952 1.24889 0.89851 1.27367 0.90306 1.00279 0.97919 1.70674 1.23511 1.24746 1.24036 0.82704 0.72168 0.73798 0.77252 1.24078 1.18568 1.20686 1.45820 1.05181 1.38834 1.31450 1.21551 1.02481 0.91743 0.88540 0.90028 0.90115 0.90152 0.86741 0.86767 0.90532 0.92083 0.91150 0.90201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.29 10.32 34.37 0.35 0.07 15 2 C -0.17 -2.15 14.13 -37.13 -0.52 -2.68 15 3 C -0.17 -2.48 13.34 -37.12 -0.50 -2.97 15 4 C 0.02 0.30 5.71 34.37 0.20 0.49 15 5 S -0.03 -0.47 21.75 -107.50 -2.34 -2.81 15 6 C 0.06 1.41 8.09 -87.28 -0.71 0.70 15 7 N -0.27 -6.92 11.62 30.89 0.36 -6.56 15 8 N -0.41 -11.57 7.52 31.26 0.23 -11.33 15 9 C 0.35 9.25 7.27 -154.81 -1.13 8.13 15 10 C -0.49 -13.17 9.50 -38.31 -0.36 -13.54 15 11 H 0.08 2.17 7.46 -52.49 -0.39 1.77 15 12 C 0.06 1.73 5.52 -17.29 -0.10 1.64 15 13 N -0.81 -21.61 13.65 55.56 0.76 -20.85 15 14 Si 1.11 28.06 25.90 -169.99 -4.40 23.66 15 15 H -0.31 -7.52 7.11 56.52 0.40 -7.12 15 16 H -0.26 -6.76 6.76 56.52 0.38 -6.38 15 17 H -0.28 -7.24 7.11 56.52 0.40 -6.84 15 18 N -0.51 -11.93 3.26 -123.18 -0.40 -12.33 15 19 C 0.10 1.80 10.89 59.85 0.65 2.45 15 20 H 0.08 0.52 8.14 -51.93 -0.42 0.10 15 21 H 0.08 0.50 8.14 -51.93 -0.42 0.07 15 22 H 0.08 0.50 8.14 -51.93 -0.42 0.08 15 23 H 0.11 1.83 8.14 -51.91 -0.42 1.40 15 24 H 0.11 1.82 8.14 -51.92 -0.42 1.40 15 25 H 0.28 7.21 8.72 -40.82 -0.36 6.85 15 26 H 0.06 0.99 8.14 -51.93 -0.42 0.57 15 27 H 0.07 1.08 7.85 -51.93 -0.41 0.68 15 28 H 0.08 1.37 7.48 -51.93 -0.39 0.98 15 LS Contribution 269.79 15.07 4.07 4.07 Total: -1.00 -31.56 269.79 -6.73 -38.29 By element: Atomic # 1 Polarization: -3.53 SS G_CDS: -2.90 Total: -6.43 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: -2.11 Total: -5.71 kcal Atomic # 7 Polarization: -52.02 SS G_CDS: 0.95 Total: -51.07 kcal Atomic # 14 Polarization: 28.06 SS G_CDS: -4.40 Total: 23.66 kcal Atomic # 16 Polarization: -0.47 SS G_CDS: -2.34 Total: -2.81 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -31.56 -6.73 -38.29 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279826215.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.197 kcal (2) G-P(sol) polarization free energy of solvation -31.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds